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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035674 ID=TCONS_00035674|Name=TCONS_00035674|organism=Clytia hemisphaerica|type=transcript|length=1456bp
TTTGTTCGTTGCGTATGCTGCTTTGTCCAATTCTTGCTTCAACCCTTTCA
TTTATGTGTGGAAAGATGCAGGGTTCAGACTTGCTTGTAAACGCTTGCTT
CGAAGGAGAGCCGTGTTCACCCCACCAAGAACCGTCAATCAAACGAACCA
AATATCTAGTTTGTGAGACCACAGTGCTAATAACCTTACTTAAAGGTCAC
gaatcaaaaatagtgtgacattttgaaaaatgcccAAATACAACTTTTTG
TCATAGCTGATGAAGTCTTAATCGAAAAGTCTTGAAATGTTAAAATGTTG
TGGAAAATACTAAGACATTAtgaataaaaattcttttttcgttaATTGGG
CTAGAAATATGGCTACAACTCAAAATTTGTATCTTTCTTAGAAATGTAAG
AGATCTTAGAATGGGACTTTCTTAACTTGACAGAGGAAggtttaatttaa
aaaaaaatgttaaatgttCATACTTTCTAGCTGTTAAATGTTCTTTTTGT
GGCTTACTTACGGAGATATGACAACCTGCCATATCATCAAAGGTTATTTT
TTAACAGGGCTGTGGTTTATTACCTGTTCGACATGTACTATACTGTTCAT
TGCATATGAACGATATGTCTCCATCACAAAACACGCTCAATATCATGATA
TTTTGACCGATCAGAAAATCAACATCATCATTGGCCTGATTTGGTCCATA
ACACTCATATTTGGAATAAGCAGCAATTTCTATCCCGTAGTTCGCATATT
TGGTGGCCAGTTGCTTATAATCGTATCCGTGATAATCTTATGTTGTAGCT
ATTATTTCGTTTGGAAAGCATTACGACAGAGTGGGAAACTCCTTTCTCGA
GAAACCAACACGCCCAATCAAGTTGCAGAGAGGAAAAGGCACTGGTCCAT
AAAGTGTTGATCTTGATTGCCTTCTACTTGGTAGCTTTTTTCCCTTCATT
ATTCTTCCAAGGGCTATTGCTTGTTCAAGGATCAATGCCTAGCGCTATAT
CGGTAGAGGTTTTACAATATACAAATTTGTTCGTTGCGTATGCTGCTTTG
TCCAATTCTTGCTTCAACCCTTTCATTTATGTGTGGAAAGATGCAGGGTT
CAAACTTGCTTGTAAACGCTTGCTTCGAAGGAGAGCCGTGTTCGCCCCAT
CAAGAACCGTCAATCAAACGAACCAAATATCTAGTTTGTGAGACCACAGT
GCTAATAACCTTACTTAAAGGTCACgaatcaaaaatagtgtgacattttg
aaaaatgcccaaaaacaactttttgtcaTAGCTGATGAAGTCTTAATCGA
TAAGTCTTGAAATGTTACAATGTTGTGGAAAATTCTAAGACATTAtgaat
aaaaattcttttttcgttaATTGGGCTAGAAATATGGCTACAACTCaaaa
tttgtatcttttttagaaatttaagaGATCTTAGAATGGGACTTTCTTAA
CTTGAC Run BLAST on NCBI protein sequence of TCONS_00035674-protein >TCONS_00035674-protein ID=TCONS_00035674-protein|Name=TCONS_00035674-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MFFLWLTYGDMTTCHIIKGYFLTGLWFITCSTCTILFIAYERYVSITKHA
QYHDILTDQKINIIIGLIWSITLIFGISSNFYPVVRIFGGQLLIIVSVII
LCCSYYFVWKALRQSGKLLSRETNTPNQVAERKRHWSIKC Run BLAST on NCBI transcript from alignment at sc0001348:6182..7637 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035674 ID=TCONS_00035674|Name=TCONS_00035674|organism=Clytia hemisphaerica|type=transcript|length=1456bp|location=Sequence derived from alignment at sc0001348:6182..7637 (Clytia hemisphaerica)
GTCAAGTTAAGAAAGTCCCATTCTAAGATCtcttaaatttctaaaaaaga
tacaaattttGAGTTGTAGCCATATTTCTAGCCCAATtaacgaaaaaaga
atttttattcaTAATGTCTTAGAATTTTCCACAACATTGTAACATTTCAA
GACTTATCGATTAAGACTTCATCAGCTAtgacaaaaagttgtttttgggc
atttttcaaaatgtcacactatttttgattcGTGACCTTTAAGTAAGGTT
ATTAGCACTGTGGTCTCACAAACTAGATATTTGGTTCGTTTGATTGACGG
TTCTTGATGGGGCGAACACGGCTCTCCTTCGAAGCAAGCGTTTACAAGCA
AGTTTGAACCCTGCATCTTTCCACACATAAATGAAAGGGTTGAAGCAAGA
ATTGGACAAAGCAGCATACGCAACGAACAAATTTGTATATTGTAAAACCT
CTACCGATATAGCGCTAGGCATTGATCCTTGAACAAGCAATAGCCCTTGG
AAGAATAATGAAGGGAAAAAAGCTACCAAGTAGAAGGCAATCAAGATCAA
CACTTTATGGACCAGTGCCTTTTCCTCTCTGCAACTTGATTGGGCGTGTT
GGTTTCTCGAGAAAGGAGTTTCCCACTCTGTCGTAATGCTTTCCAAACGA
AATAATAGCTACAACATAAGATTATCACGGATACGATTATAAGCAACTGG
CCACCAAATATGCGAACTACGGGATAGAAATTGCTGCTTATTCCAAATAT
GAGTGTTATGGACCAAATCAGGCCAATGATGATGTTGATTTTCTGATCGG
TCAAAATATCATGATATTGAGCGTGTTTTGTGATGGAGACATATCGTTCA
TATGCAATGAACAGTATAGTACATGTCGAACAGGTAATAAACCACAGCCC
TGTTAAAAAATAACCTTTGATGATATGGCAGGTTGTCATATCTCCGTAAG
TAAGCCACAAAAAGAACATTTAACAGCTAGAAAGTATGaacatttaacat
ttttttttaaattaaaccTTCCTCTGTCAAGTTAAGAAAGTCCCATTCTA
AGATCTCTTACATTTCTAAGAAAGATACAAATTTTGAGTTGTAGCCATAT
TTCTAGCCCAATtaacgaaaaaagaatttttattcaTAATGTCTTAGTAT
TTTCCACAACATTTTAACATTTCAAGACTTTTCGATTAAGACTTCATCAG
CTATGACAAAAAGTTGTATTTgggcatttttcaaaatgtcacactatttt
tgattcGTGACCTTTAAGTAAGGTTATTAGCACTGTGGTCTCACAAACTA
GATATTTGGTTCGTTTGATTGACGGTTCTTGGTGGGGTGAACACGGCTCT
CCTTCGAAGCAAGCGTTTACAAGCAAGTCTGAACCCTGCATCTTTCCACA
CATAAATGAAAGGGTTGAAGCAAGAATTGGACAAAGCAGCATACGCAACG
AACAAA Coding sequence (CDS) from alignment at sc0001348:6182..7637 >TCONS_00035674 ID=TCONS_00035674|Name=TCONS_00035674|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0001348:6182..7637 (Clytia hemisphaerica)
TCAACACTTTATGGACCAGTGCCTTTTCCTCTCTGCAACTTGATTGGGCG
TGTTGGTTTCTCGAGAAAGGAGTTTCCCACTCTGTCGTAATGCTTTCCAA
ACGAAATAATAGCTACAACATAAGATTATCACGGATACGATTATAAGCAA
CTGGCCACCAAATATGCGAACTACGGGATAGAAATTGCTGCTTATTCCAA
ATATGAGTGTTATGGACCAAATCAGGCCAATGATGATGTTGATTTTCTGA
TCGGTCAAAATATCATGATATTGAGCGTGTTTTGTGATGGAGACATATCG
TTCATATGCAATGAACAGTATAGTACATGTCGAACAGGTAATAAACCACA
GCCCTGTTAAAAAATAACCTTTGATGATATGGCAGGTTGTCATATCTCCG
TAAGTAAGCCACAAAAAGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035674-exon-sc0001348-1491911889:6182..7637 | TCONS_00035674-exon-sc0001348-1491911889:6182..7637 | Clytia hemisphaerica | exon |
| TCONS_00035674-exon-sc0001348-1510915933:6182..7637 | TCONS_00035674-exon-sc0001348-1510915933:6182..7637 | Clytia hemisphaerica | exon |
| TCONS_00035674-exon-sc0001348-1575043694:6182..7637 | TCONS_00035674-exon-sc0001348-1575043694:6182..7637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001348 | supercontig | sc0001348:6182..7637 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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