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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035670 ID=TCONS_00035670|Name=TCONS_00035670|organism=Clytia hemisphaerica|type=transcript|length=2269bp
ATAACAACGATTCATTGATGCTTGAAAAATCTGATTATCTTTAAAAGCAC
TTTTTTAATAGCTATGTCATATCGTCACAGCGACTAGGGcaattcaaatt
tcctttctaaCTACGAGAGGAGAATTGATAAAATTGAGACACAAGCGTAG
TGGGTCGCTACTGcagtgtttttttgttttttttgcatgtAATAAAAAGA
TTGATGGAGATTTTGACAATGGTGGCGTAGAAAGGTGAACAACCGAtcaa
aagtgaagaaaaatttggagatttttctGAAACATGTTTTCAGGGTGGAT
ATGGGCGTCAATCAGTGGCGGAGCTGGTTTACTAGTCCTCATCACGTGta
tatgttgttgttgttgcattCGTAACAAGAAGAAAAAGGAGAAGGAAAAA
GACACTACTTATAATCGAGTACCTGACGAAGAAATCGGTAGTGAACTCGA
AGAATTAACCGATTCATTCGATTCCCGCCACagtcaaaaacagaaaaaac
ggCACCCCCGGTCTCAGAAAAGAGACAGTAGTGGTAAGGGTGATCCATTA
ACATATTACGTATCTGCACCTCATCATCGTGCTGTTGACCGTGTTGCACA
GTATCACGAATCTGGTGCTGAATCCAGTTTATCCGATTACGATCGGGCAT
CTGAATCGGTTTCCATTTCAGCTTATGGTGACGCAGTTTCTACACATAGT
AGTGATAGTTATGGGACAAATAGCTTTGCAAAAGCTCCTGGTAACTTAGC
TATCCAAGCATCGTTGATATACTCGAGAGATTCTAAATATGTAGCTGGGA
AGATAGTTACTATTGATGGTCTTCGTTTTGAGAAAAGCACAATGAAACCA
ATGCTTGAAATTAAATGTCACGTGGTTATTTTACCGTTAAAAAAATATGC
TTTGAAAACAAACTGGTATCATATTCAGAAGAACCGAATTAAAATGGACg
aatattttaaattcaaatttaagcAGTTACCTCAAGAAACAAAAACGATG
TTACGGTTTAGACTTTACGGCCGACGTGCAACTGTCGGTAGATCACATTG
TCTTGGAGAATGTTACGTCGGTCTACGTGAAATTATTACATCACGGGGTG
GACTCACGTTATGGCGGTCTATAACTAAGGGTGCCCCTGAGATAGTTGAT
TTAGAGTAATGGAAATCAAAGTGAAATATACTGAAATAAGGTGCCCTATT
GGGTTCAATTTACGATTAAATACGCATTTAATTAGAGAATTTCCTCATAC
AATTTAACCATCATAAGAATATGGAAGACactttttagttgtgttttaaa
TTCCTTTTTATTCCTTAGGAAATTAGGATGTAATCCAATATTTGCTGATG
CTTTATAGAAAATGAAAGTGCTAACATTTTAAGATGGGCGtagaatttat
caaaaaaatggGAATAAACAtgcatttctttttgttttatgatttttttt
tgattttttgttttgtttttgtaatcCTCTCCCTGTCCTGACCATTTCTA
TAATGATATGTGAAATATATTTCATGTCAGCGAAATGCTAGAACGCACAA
TAACTTTAAGGCCTGTCGTAGATACGGTTTTCTACTaatcttttaaaata
aatgAATATAATGAATGGATGGTTTATCAGATGGTTTTTTGTATACCCCT
GTCGAGGAAATCTATAACTTTTGCTACTTTAACCCTCTGGGATTCCAGGG
TTCATTATGTTTAATTTTACTGGGGCTAAAAAATGTCACCCACAGAAATC
CAGCAAGAAATATTCAAGTACCTtgagggaacttattttgacggggacaa
attttgttaaattcgccgaattcaccaaaattagttcccgccaaaattag
ttccctgaAGGTATCTTGTTCCATTTTCTATTCTATTCTTCCGACTAACT
TACTGTAGTTTTCACAAATTTGTTAAAAGATGTCTCGATAGGTACCTTGT
TACGTAAAAGAAAATACAAgtgatttttcttcttgttgTCTTAGGACCTT
CACCCTTAAAGGGAGGCCCCATACCCTTTCACAAATGTGTTGTAATGGAG
ACTAACATGGGAAGGTTTGGTTTTTTTCTGTTTATCTTAAGATAAACCTG
TATTGAGTATTGGCGAgacttttttcataattttgtcaAGTTactttcaa
taaatttttttttaccttttgtaTTATATTTAGAATAATCTAataacttt
tattttaaatAGCTGAAGAATTAATCGGAGCAGAataacttagaaaaaaa
ttacgaattaaaaatcaaa Run BLAST on NCBI protein sequence of TCONS_00035670-protein >TCONS_00035670-protein ID=TCONS_00035670-protein|Name=TCONS_00035670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MFSGWIWASISGGAGLLVLITCICCCCCIRNKKKKEKEKDTTYNRVPDEE
IGSELEELTDSFDSRHSQKQKKRHPRSQKRDSSGKGDPLTYYVSAPHHRA
VDRVAQYHESGAESSLSDYDRASESVSISAYGDAVSTHSSDSYGTNSFAK
APGNLAIQASLIYSRDSKYVAGKIVTIDGLRFEKSTMKPMLEIKCHVVIL
PLKKYALKTNWYHIQKNRIKMDEYFKFKFKQLPQETKTMLRFRLYGRRAT
VGRSHCLGECYVGLREIITSRGGLTLWRSITKGAPEIVDLE Run BLAST on NCBI transcript from alignment at sc0001348:38490..42994- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035670 ID=TCONS_00035670|Name=TCONS_00035670|organism=Clytia hemisphaerica|type=transcript|length=4505bp|location=Sequence derived from alignment at sc0001348:38490..42994- (Clytia hemisphaerica)
ATAACAACGATTCATTGATGCTTGAAAAATCTGATTATCTTTAAAAGCAC
TTTTTTAATAGCTATGTCATATCGTCACAGCGACTAGGGCAATTCAAATT
TCCTTTCTAACTACGAGAGGAGAATTGATAAAATTGAGACACAAGCGTAG
TGGGTCGCTACTGCAGTGTTTTTTTGTTTTTTTTGCATGTAATAAAAAGA
TTGATGGAGATTTTGACAATGGTGGCGTAGAAAGGTGAACAACCGATCAA
AAGTGAAGAAAAATTTGGAGATTTTTCTGAAACATGTGTAGGTTTTTTTA
ATTTTGTTTTGGAAAAAGAATGTCTGGGTCACAGATCTGTAAAGCCCGAA
GGGCTAGATATGCAGCTTTAAGGTTTCTCCAGCAAAAAAAAGTGAAGCAA
AAAATTGACTTTTTAAATTTCGTGCCCGCGGATAGGATCTAGCACTTTAA
TTGTTTTTGGAGCGCGAGCTAAAAAAAGTAGGCGGCAAACGCTATTTCAC
ATCTCTCAAACCGGTGAAATTGCATATTTTAGTCACGTGACTTTGGTAGG
AAATCCTTCCAAACCTAGGCTTCACTTTTCGATAAAAGTTGCTTATCTAG
CCCTTCGGGCTTTACAGATCTGTGTTCTGGGTGCAGTTTAGCCTGGATAT
CCAAGCTCAAAATTAAAAAAAAAAAAATTTACCTCTCAACAAACAAAGTT
CTAAAATTATAGAAACTCGAACATAAAATATAAAAAACTAGACTGTGAAA
TAGTTTACAGCCTGGATATCCAGGCTAGATGCAGTTATTTCAATAAGTGA
AATTTCTCATTGGTGAAACAACAATACCTTCTGAGTAAATACCACTTTCA
GTCAACCACTTTAACATCCCTGTCTCGTTGTCATTGATCTGGTTATAAAC
TTTCAGACAATGAGAAATTTATTTTTAAGCAAAATCTAAAATTACAGAAA
GCTATGCAATCAGTCACAGCAATCTTTCCAGTGTCGTAGATCCGATGGGA
CCCAGCATACCAATTAGAAAAATCGGCCTGAATATCTGAAACTTTCATTA
CAACCTATAAACGTTGTTTATATTATAAGAATGGTGTTTTCCACTTCTTC
GTGTATACATATTCTTGACAAAAATCATCCTTAGATATCCATAGCGGTAT
TCCTAGTTTAGAATTGACCAACTCAATACCTTATCGGGGAAAAATTGGTC
GGGAAATTTTGGCCAAATGACGAATATTTTTCCCCGACGAAAATTTTCCC
CGGCCTTTATGCGTTTACCAACTACCAGCAAGTGACGAATATTTTTCCCC
GACAAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGGTATGCAATGCAA
TGTATACCTTAGCCAAGGTTATAAGCTAATGTACGTTTTTTAATAAGAAC
AAACTATATAAGAAAATAAGGCTTCGGTGGCCAAAAAGTTAAGAGCATCC
CAAGGCTTCAAAAATTTTGGATGTTCTTATAAAAAATGTGTAGTATAATT
TTGACTTTAAAAAGATGTATACTATTATTAGCTTGTTGCAAACAAACTCG
GTAAAAACATGCTCGCCTTTGCTGAAGACTTTTCGTACTAGCAAAAAAAA
CAAAAATACACGTTTTTCTATAAGAACAAACTATATAAGAACATAAGGCT
TCGATGACCGAAATTAAGAACTCTAAAACAGCCGGTTTCTTAGAAAAATG
GGCAAAAATTTTCAAAAAATGGTGAAAATATAAAGAACATGTCAAGAACA
TTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATCCGAAGGCTTCAAAAT
TTTTCGATGTTCTTATAAAAAACGTGTATTTTGTTGTCAAAGGCAAAAAT
ATTAACATCTACGTTATTCCCGAGAGCAATTAAAAATGGCAACAAAATTA
AACAGTCATGGATAGAATTTATTTTCCACTTTTTAATTGGACATTAATTA
AAAATGAAATTCCCAACGGTATTTTAACGATGTTTGTCAAAAATGTTTCA
ATTATTTTGTTTTTGTTTGTATGCTGAAATTAATTAGGCGCATCTCAGAA
GTAACAAGGGGAAGGTCTTCCATTTAATTACTTTATACAGTTAAGCTTCA
ATACACGCTTTTTTATAAGAATATACTTTATAAGAATATTCATGATGGAA
TTGGCCACTTAAGAATGTGGTAATTTGGCAGCCGAATCTAAGAATGCCAT
TTCCCACAATTAAATTGCACAATTAAATTGCAAATTATTCCCCAGCAACG
CAAAAAGGTTCCACGAAAATGCTAAGTCTTTGGTTGAGGTATGTTTTACA
TGCTAGATGTTGGCTTAGGTTGGATGCAAACTTATACAGTAAGAATATTT
CAGAATGATTTTTCCCAAAAAGTTTTAAAGAACATTCATGATTCGGAAAA
ACACCATAAAAAAACGTGAGAATAATAACATTATCACAGCCAAGCCGAAA
GAAAAATGGTTTTCATAAAAATGTTTATACAAGCAAACAAATAGAAAATC
TTTATCGATAAATTTGTTGTCAGTTTCAGGGTGGATATGGGCGTCAATCA
GTGGCGGAGCTGGTTTACTAGTCCTCATCACGTGTATATGTTGTTGTTGT
TGCATTCGTAACAAGAAGAAAAAGGAGAAGGAAAAAGACACTACTTATAA
TCGAGTACCTGACGAAGAAATCGGTAGTGAACTCGAAGAATTAACCGATT
CATTCGATTCCCGCCACAGTCAAAAACAGAAAAAACGGCACCCCCGGTCT
CAGAAAAGAGACAGTAGTGGTAAGGGTGATCCATTAACATATTACGTATC
TGCACCTCATCATCGTGCTGTTGACCGTGTTGCACAGTATCACGAATCTG
GTGCTGAATCCAGTTTATCCGATTACGATCGGGCATCTGAATCGGTTTCC
ATTTCAGCTTATGGTGACGCAGTTTCTACACATAGTAGTGATAGTTATGG
GACAAATAGCTTTGCAAAAGCTCCTGGTAACTTAGCTATCCAAGCATCGT
TGATATACTCGAGAGATTCTAAATATGTAGCTGGGAAGATAGTTACTATT
GATGGTCTTCGTTTTGAGAAAAGCACAATGAAACCAATGCTTGAAATTAA
ATGTCACGTGGTTATTTTACCGTTAAAAAAATATGCTTTGAAAACAAACT
GGTATCATATTCAGAAGAACCGAATTAAAATGGACGAATATTTTAAATTC
AAATTTAAGCAGTTACCTCAAGAAACAAAAACGATGTTACGGTTTAGACT
TTACGGCCGACGTGCAACTGTCGGTAGATCACATTGTCTTGGAGAATGTT
ACGTCGGTCTACGTGAAATTATTACATCACGGGGTGGACTCACGTTATGG
CGGTCTATAACTAAGGGTGCCCCTGAGATAGTTGATTTAGAGTAATGGAA
ATCAAAGTGAAATATACTGAAATAAGGTGCCCTATTGGGTTCAATTTACG
ATTAAATACGCATTTAATTAGAGAATTTCCTCATACAATTTAACCATCAT
AAGAATATGGAAGACACTTTTTAGTTGTGTTTTAAATTCCTTTTTATTCC
TTAGGAAATTAGGATGTAATCCAATATTTGCTGATGCTTTATAGAAAATG
AAAGTGCTAACATTTTAAGATGGGCGTAGAATTTATCAAAAAAATGGGAA
TAAACATGCATTTCTTTTTGTTTTATGATTTTTTTTTGATTTTTTGTTTT
GTTTTTGTAATCCTCTCCCTGTCCTGACCATTTCTATAATGATATGTGAA
ATATATTTCATGTCAGCGAAATGCTAGAACGCACAATAACTTTAAGGCCT
GTCGTAGATACGGTTTTCTACTAATCTTTTAAAATAAATGAATATAATGA
ATGGATGGTTTATCAGATGGTTTTTTGTATACCCCTGTCGAGGAAATCTA
TAACTTTTGCTACTTTAACCCTCTGGGATTCCAGGGTTCATTATGTTTAA
TTTTACTGGGGCTAAAAAATGTCACCCACAGAAATCCAGCAAGAAATATT
CAAGTACCTTGAGGGAACTTATTTTGACGGGGACAAATTTTGTTAAATTC
GCCGAATTCACCAAAATTAGTTCCCGCCAAAATTAGTTCCCTGAAGGTAT
CTTGTTCCATTTTCTATTCTATTCTTCCGACTAACTTACTGTAGTTTTCA
CAAATTTGTTAAAAGATGTCTCGATAGGTACCTTGTTACGTAAAAGAAAA
TACAAGTGATTTTTCTTCTTGTTGTCTTAGGACCTTCACCCTTAAAGGGA
GGCCCCATACCCTTTCACAAATGTGTTGTAATGGAGACTAACATGGGAAG
GTTTGGTTTTTTTCTGTTTATCTTAAGATAAACCTGTATTGAGTATTGGC
GAGACTTTTTTCATAATTTTGTCAAGTTACTTTCAATAAATTTTTTTTTA
CCTTTTGTATTATATTTAGAATAATCTAATAACTTTTATTTTAAATAGCT
GAAGAATTAATCGGAGCAGAATAACTTAGAAAAAAATTACGAATTAAAAA
TCAAA Coding sequence (CDS) from alignment at sc0001348:38490..42994- >TCONS_00035670 ID=TCONS_00035670|Name=TCONS_00035670|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0001348:38490..42994- (Clytia hemisphaerica)
TTTCAGGGTGGATATGGGCGTCAATCAGTGGCGGAGCTGGTTTACTAGTC
CTCATCACGTGTATATGTTGTTGTTGTTGCATTCGTAACAAGAAGAAAAA
GGAGAAGGAAAAAGACACTACTTATAATCGAGTACCTGACGAAGAAATCG
GTAGTGAACTCGAAGAATTAACCGATTCATTCGATTCCCGCCACAGTCAA
AAACAGAAAAAACGGCACCCCCGGTCTCAGAAAAGAGACAGTAGTGGTAA
GGGTGATCCATTAACATATTACGTATCTGCACCTCATCATCGTGCTGTTG
ACCGTGTTGCACAGTATCACGAATCTGGTGCTGAATCCAGTTTATCCGAT
TACGATCGGGCATCTGAATCGGTTTCCATTTCAGCTTATGGTGACGCAGT
TTCTACACATAGTAGTGATAGTTATGGGACAAATAGCTTTGCAAAAGCTC
CTGGTAACTTAGCTATCCAAGCATCGTTGATATACTCGAGAGATTCTAAA
TATGTAGCTGGGAAGATAGTTACTATTGATGGTCTTCGTTTTGAGAAAAG
CACAATGAAACCAATGCTTGAAATTAAATGTCACGTGGTTATTTTACCGT
TAAAAAAATATGCTTTGAAAACAAACTGGTATCATATTCAGAAGAACCGA
ATTAAAATGGACGAATATTTTAAATTCAAATTTAAGCAGTTACCTCAAGA
AACAAAAACGATGTTACGGTTTAGACTTTACGGCCGACGTGCAACTGTCG
GTAGATCACATTGTCTTGGAGAATGTTACGTCGGTCTACGTGAAATTATT
ACATCACGGGGTGGACTCACGTTATGGCGGTCTATAACTAAGGGTGCCCC
TGAGATAGTTGATTTAGAGTAAATGTTTTCAGGGTGGATATGGGCGTCAA
TCAGTGGCGGAGCTGGTTTACTAGTCCTCATCACGTGTATATGTTGTTGT
TGTTGCATTCGTAACAAGAAGAAAAAGGAGAAGGAAAAAGACACTACTTA
TAATCGAGTACCTGACGAAGAAATCGGTAGTGAACTCGAAGAATTAACCG
ATTCATTCGATTCCCGCCACAGTCAAAAACAGAAAAAACGGCACCCCCGG
TCTCAGAAAAGAGACAGTAGTGGTAAGGGTGATCCATTAACATATTACGT
ATCTGCACCTCATCATCGTGCTGTTGACCGTGTTGCACAGTATCACGAAT
CTGGTGCTGAATCCAGTTTATCCGATTACGATCGGGCATCTGAATCGGTT
TCCATTTCAGCTTATGGTGACGCAGTTTCTACACATAGTAGTGATAGTTA
TGGGACAAATAGCTTTGCAAAAGCTCCTGGTAACTTAGCTATCCAAGCAT
CGTTGATATACTCGAGAGATTCTAAATATGTAGCTGGGAAGATAGTTACT
ATTGATGGTCTTCGTTTTGAGAAAAGCACAATGAAACCAATGCTTGAAAT
TAAATGTCACGTGGTTATTTTACCGTTAAAAAAATATGCTTTGAAAACAA
ACTGGTATCATATTCAGAAGAACCGAATTAAAATGGACGAATATTTTAAA
TTCAAATTTAAGCAGTTACCTCAAGAAACAAAAACGATGTTACGGTTTAG
ACTTTACGGCCGACGTGCAACTGTCGGTAGATCACATTGTCTTGGAGAAT
GTTACGTCGGTCTACGTGAAATTATTACATCACGGGGTGGACTCACGTTA
TGGCGGTCTATAACTAAGGGTGCCCCTGAGATAGTTGATTTAGAGTAAAT
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035670-exon-sc0001348-1575043694:42708..42994 | TCONS_00035670-exon-sc0001348-1575043694:42708..42994 | Clytia hemisphaerica | exon |
| TCONS_00035670-exon-sc0001348-1575043694:38490..40471 | TCONS_00035670-exon-sc0001348-1575043694:38490..40471 | Clytia hemisphaerica | exon |
| TCONS_00035670-exon-sc0001348-1510915933:42708..42994 | TCONS_00035670-exon-sc0001348-1510915933:42708..42994 | Clytia hemisphaerica | exon |
| TCONS_00035670-exon-sc0001348-1510915933:38490..40471 | TCONS_00035670-exon-sc0001348-1510915933:38490..40471 | Clytia hemisphaerica | exon |
| TCONS_00035670-exon-sc0001348-1491911889:42708..42994 | TCONS_00035670-exon-sc0001348-1491911889:42708..42994 | Clytia hemisphaerica | exon |
| TCONS_00035670-exon-sc0001348-1491911889:38490..40471 | TCONS_00035670-exon-sc0001348-1491911889:38490..40471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001348 | supercontig | sc0001348:38490..42994 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000008 | C2_dom |
Blast
The following BLAST results are available for this feature:
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