TCONS_00035662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035662
Unique NameTCONS_00035662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1502

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035662 ID=TCONS_00035662|Name=TCONS_00035662|organism=Clytia hemisphaerica|type=transcript|length=1502bp
NggaaagacagtatttcttatAATTAATACTGATGAAAAGCAATCATTAC
TTTTTATTAAGTTCATAGCATCAAATACAATGGAAAACAAAGTAACAATA
GTATTACGACTTATACGTTCTTTTGAACATAGAACAATAAGAAATGTTGT
GTATCACGATATAGATTTGGATCTGTTGACATTGGAATTTATCAACTTTG
TTAAAACAGACCTTAAAACAAAAACTTCACTACCGCCACCTTTTCGTACC
TTCAAATATGACACAATGAAAGTTCAACACAAGGCTTTTGGCTCAAAGAC
AAGTGATCCTGTCATTAATACATTTAATGATGATgaacttattcttaata
ttgAGAAAAGTTTGAGGGATAATGGTATTGTAAATGAAACAGAAATCTCC
TTTTTTGTGTTGGATGATTATCGCAAGTATCAGGAAAATCCGCAAATTGC
TTGGTGATGAGAATTGTAACGATGTAAAGGGTTtgcttttgtaatttctt
caTTGTGTTGATTTTTAAAACACGCTGTGTGCATAATACAGATAAATGAG
ACTTGGTTGGTAAAATGTATGGTTATGGCGCATTTACCAGAATATTATTG
AATGAGAATCCCAGAGGCTTGCCCAAAcacaatcaaattttttcaactcC
TCCAATGTTTCCAAGCTTTTCACAATGATTAGTCTTTTGGGAAGTTGTTT
AACCGGAAACGACAGTTTTTAGTAGATGATCCTTCTTTTACAACAAAGTT
GGCACTGCTTGAGATTCCAGAATAGCTTGTCTTTTTTACCCAACTTTCAT
ATATTTTAGAAACTTACTTTAATTTTACCTTTACACACACACAATACATT
GACATTTAAATACATTGATTTATTTGTCATATAGAATATAGAATTGGACT
TGTAATCGGACTATCCCAAAATAGCTTTTTCCTCAAGTTTTTTATCTGTA
TCAGGTATAAAAATTTATACTGCAGGGATTTTATGGCTTAGACTTTATGG
CTTAGACTTTCTCTTTTCAATCATTTATTTCAGTACCCTTAAGTCTCTAT
TAAAACTGCAAATGCCTTTCCTAATTATCGCACAATTTTGTGGAATTTAT
TTTTGGCaaatcaagaatattttcaaatttggcgAAACAAAAAATGGCGA
ATGACCCATTGTTTTGGTTAGTTGAAAGAggttttttcatgaaaatctaG
GCAAAGTCgaaagataatttcaaatttgtaaataactGATTTTGTTGAAT
AACCATAAAATCCTAATTTGGAAGGAGGTGGGATAAGTACAGATAAGTAT
ATTACTTAGAAAATAAATGGATGAGTTGAATCTCTTGTATTCTGTCGCGc
tcgatttcaaaattttgaatttttcaaatgttcaaatAAAGCCCTGTTTG
ATTTATTCTGTGCGTTTATTAATTTGAAGTTCTGTTTTCCGGCCTATACA
CATGTTTATCATCTTATCAATCCTAGCtaactgtacgtttattagaaACT
CG
Run BLAST on NCBI

protein sequence of TCONS_00035662-protein

>TCONS_00035662-protein ID=TCONS_00035662-protein|Name=TCONS_00035662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
GKTVFLIINTDEKQSLLFIKFIASNTMENKVTIVLRLIRSFEHRTIRNVV
YHDIDLDLLTLEFINFVKTDLKTKTSLPPPFRTFKYDTMKVQHKAFGSKT
SDPVINTFNDDELILNIEKSLRDNGIVNETEISFFVLDDYRKYQENPQIA
W
Run BLAST on NCBI

transcript from alignment at sc0001347:346..1847

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035662 ID=TCONS_00035662|Name=TCONS_00035662|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at sc0001347:346..1847 (Clytia hemisphaerica)
CGAGTttctaataaacgtacagttaGCTAGGATTGATAAGATGATAAACA
TGTGTATAGGCCGGAAAACAGAACTTCAAATTAATAAACGCACAGAATAA
ATCAAACAGGGCTTTatttgaacatttgaaaaattcaaaattttgaaatc
gagCGCGACAGAATACAAGAGATTCAACTCATCCATTTATTTTCTAAGTA
ATATACTTATCTGTACTTATCCCACCTCCTTCCAAATTAGGATTTTATGG
TTATTCAACAAAATCagttatttacaaatttgaaattatctttcGACTTT
GCCtagattttcatgaaaaaaccTCTTTCAACTAACCAAAACAATGGGTC
ATTCGCCATTTTTTGTTTcgccaaatttgaaaatattcttgatttGCCAA
AAATAAATTCCACAAAATTGTGCGATAATTAGGAAAGGCATTTGCAGTTT
TAATAGAGACTTAAGGGTACTGAAATAAATGATTGAAAAGAGAAAGTCTA
AGCCATAAAGTCTAAGCCATAAAATCCCTGCAGTATAAATTTTTATACCT
GATACAGATAAAAAACTTGAGGAAAAAGCTATTTTGGGATAGTCCGATTA
CAAGTCCAATTCTATATTCTATATGACAAATAAATCAATGTATTTAAATG
TCAATGTATTGTGTGTGTGTAAAGGTAAAATTAAAGTAAGTTTCTAAAAT
ATATGAAAGTTGGGTAAAAAAGACAAGCTATTCTGGAATCTCAAGCAGTG
CCAACTTTGTTGTAAAAGAAGGATCATCTACTAAAAACTGTCGTTTCCGG
TTAAACAACTTCCCAAAAGACTAATCATTGTGAAAAGCTTGGAAACATTG
GAGgagttgaaaaaatttgattgtgTTTGGGCAAGCCTCTGGGATTCTCA
TTCAATAATATTCTGGTAAATGCGCCATAACCATACATTTTACCAACCAA
GTCTCATTTATCTGTATTATGCACACAGCGTGTTTTAAAAATCAACACAA
tgaagaaattacaaaagcaAACCCTTTACATCGTTACAATTCTCATCACC
AAGCAATTTGCGGATTTTCCTGATACTTGCGATAATCATCCAACACAAAA
AAGGAGATTTCTGTTTCATTTACAATACCATTATCCCTCAAACTTTTCTc
aatattaagaataagttcATCATCATTAAATGTATTAATGACAGGATCAC
TTGTCTTTGAGCCAAAAGCCTTGTGTTGAACTTTCATTGTGTCATATTTG
AAGGTACGAAAAGGTGGCGGTAGTGAAGTTTTTGTTTTAAGGTCTGTTTT
AACAAAGTTGATAAATTCCAATGTCAACAGATCCAAATCTATATCGTGAT
ACACAACATTTCTTATTGTTCTATGTTCAAAAGAACGTATAAGTCGTAAT
ACTATTGTTACTTTGTTTTCCATTGTATTTGATGCTATGAACTTAATAAA
AAGTAATGATTGCTTTTCATCAGTATTAATTataagaaatactgtctttc
cN

Coding sequence (CDS) from alignment at sc0001347:346..1847

>TCONS_00035662 ID=TCONS_00035662|Name=TCONS_00035662|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0001347:346..1847 (Clytia hemisphaerica)
TCACCAAGCAATTTGCGGATTTTCCTGATACTTGCGATAATCATCCAACA
CAAAAAAGGAGATTTCTGTTTCATTTACAATACCATTATCCCTCAAACTT
TTCTcaatattaagaataagttcATCATCATTAAATGTATTAATGACAGG
ATCACTTGTCTTTGAGCCAAAAGCCTTGTGTTGAACTTTCATTGTGTCAT
ATTTGAAGGTACGAAAAGGTGGCGGTAGTGAAGTTTTTGTTTTAAGGTCT
GTTTTAACAAAGTTGATAAATTCCAATGTCAACAGATCCAAATCTATATC
GTGATACACAACATTTCTTATTGTTCTATGTTCAAAAGAACGTATAAGTC
GTAATACTATTGTTACTTTGTTTTCCATTGTATTTGATGCTATGAACTTA
ATAAAAAGTAATGATTGCTTTTCATCAGTATTAATTataagaaatactgt
ctttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020894XLOC_020894Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035662-proteinTCONS_00035662-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035662-exon-sc0001347-1491911889:346..1847TCONS_00035662-exon-sc0001347-1491911889:346..1847Clytia hemisphaericaexon
TCONS_00035662-exon-sc0001347-1510915933:346..1847TCONS_00035662-exon-sc0001347-1510915933:346..1847Clytia hemisphaericaexon
TCONS_00035662-exon-sc0001347-1575043694:346..1847TCONS_00035662-exon-sc0001347-1575043694:346..1847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001347supercontigsc0001347:346..1847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.0302	23.9393	16.6758	13.0406	5.55639	4.10715	7.66465	8.52178	6.47752	4.17383	7.21331	4.70723	5.74571	5.91167	7.46299	6.72649	6.41972	6.70163	4.83092	4.91499	11.1082	8.95857	18.5702	16.439	5.32258	8.20753	6.93063	6.97238	7.47211	8.82889
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018794UPF0538
Blast
[Close]
BLAST of TCONS_00035662 vs. Swiss-Prot (Human)
Match: CB076 (UPF0538 protein C2orf76 OS=Homo sapiens GN=C2orf76 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.963e-35
Identity = 59/123 (47.97%), Postives = 88/123 (71.54%), Query Frame = 2 
Query:   86 NKVTIVLRLIRSFEHRTIRNVVYHDIDLDLLTLEFINFVKTDLKTKTSLPPPFRTFKYDTMKVQHKAFGSKTSDPVINTFNDDELILNIEKSLRDNGIVNETEISFFVLDDYRKYQENPQIAW 454
             +VTI +RLIRSFEHR  + VVYH ++LD    EFI F+K D+  +T+LPPPFR +KYD +K+ H+A  SKT++ V++  +D+ L+L  + +L+  GI +ETEI+FF  +DY+ Y+ NP  +W
Sbjct:    4 GEVTITVRLIRSFEHRNFKPVVYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALKIIHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISSW 126
The following BLAST results are available for this feature:
BLAST of TCONS_00035662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CB0761.963e-3547.97UPF0538 protein C2orf76 OS=Homo sapiens GN=C2orf76... [more]
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