TCONS_00035641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035641
Unique NameTCONS_00035641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035641 ID=TCONS_00035641|Name=TCONS_00035641|organism=Clytia hemisphaerica|type=transcript|length=291bp
CCCATGGTGGCCACGCTCCTGGAAATTCCTGGAATATCCTGGAATTAATG
TTTTCTCCTGGAAAGTCCTTGAAACTCCTGGgatttcttgtaatttttta
aaatgtCCTGGAATGTCCTGGATATTCTAAATTCtttgaatatatatttt
tttcaatcgacTTTTTCGTTTCGCAttctaaaattggaaaaatcttgACN
GTTAATGTAAAATATGGTTTCGCAATAGCAGACAGTATAATGTTTATATA
AAGAAGTTAGCAAAACagaactaaaactaaaattttatcct
Run BLAST on NCBI

transcript from alignment at sc0001342:3537..3827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035641 ID=TCONS_00035641|Name=TCONS_00035641|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at sc0001342:3537..3827 (Clytia hemisphaerica)
aggataaaattttagttttagttctGTTTTGCTAACTTCTTTATATAAAC
ATTATACTGTCTGCTATTGCGAAACCATATTTTACATTAACNGTcaagat
ttttccaattttagaaTGCGAAACGAAAAAgtcgattgaaaaaaatatat
attcaaaGAATTTAGAATATCCAGGACATTCCAGGacattttaaaaaatt
acaagaaatcCCAGGAGTTTCAAGGACTTTCCAGGAGAAAACATTAATTC
CAGGATATTCCAGGAATTTCCAGGAGCGTGGCCACCATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020877XLOC_020877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035641-exon-sc0001342-1491911889:3537..3827TCONS_00035641-exon-sc0001342-1491911889:3537..3827Clytia hemisphaericaexon
TCONS_00035641-exon-sc0001342-1510915933:3537..3827TCONS_00035641-exon-sc0001342-1510915933:3537..3827Clytia hemisphaericaexon
TCONS_00035641-exon-sc0001342-1575043694:3537..3827TCONS_00035641-exon-sc0001342-1575043694:3537..3827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001342supercontigsc0001342:3537..3827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.60404	7.5269	6.65564	8.11785	14.5334	5.05317	1.66266	4.15084	23.9753	12.1489	23.584	32.1425	25.5161	24.7123	18.1138	18.1255	20.3874	27.1986	19.7046	23.0171	24.5907	23.6769	11.3682	12.5821	1.85132	8.18252	23.0527	18.2942	18.1468	17.0618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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