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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035634 ID=TCONS_00035634|Name=TCONS_00035634|organism=Clytia hemisphaerica|type=transcript|length=814bp
ggtTCTCTAAACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTACA
CTTCGCCAATAGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAGAT
TCTGCATCGTTGAATCCACTGCTTTCAAAAGAAGGCTTAACAAACAGTTG
AAAAGGAAAATCATGACACCCGTCCGAAGATCAGCAAGACTTCGAAGATC
GGATATTCCGAATTTCCTTCGAGAAGACGATCGTCTCATTGACTCGCCCA
CTCAAGTTGAACAAGACATTATTGAAGGAAATATAGGCTTTGTACCAAGC
AAATTTATAAATACTCCTTTGAATAACGGCTGGTTGATCgaggaagaaga
aaaagaaccgGTAGACGAAGATTGCGCATGCGAATTATCTTTCAtggaat
gataaaaaattttttcgattttgtatATAGAAACACTTGTGAACGATATC
TGGTTTTGAATTTGTATATATGGGATAACTTTGAGTTGTTGGTTATAAAT
AATCTATTTCAACTACATAGTGATGATAATGTTCAGCCATTTCTAAAGTA
TTTCTCGATATAATTACCagtgaaaacaaaaatggctgttTATTAGTGTA
TTGAATTCTTTAGATATTGAACCATGTGGATTATGACGTAAGTTCGTGAA
GACTCTTTCaggataaaaaatattgaattggatttctaaactttctgaTA
CAGTTACAATATGAGTAACGAAGAAGGCTTAGTCTTTGATTATCCTCTAT
TACTCTCTATCATAtgtatctttttcaaaaacatttcatatGTAAATATG
TTGTTTTCTTTCAT Run BLAST on NCBI protein sequence of TCONS_00035634-protein >TCONS_00035634-protein ID=TCONS_00035634-protein|Name=TCONS_00035634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
GSLNRLNYAITPGRRVHFANRDSPIDFKSSIIRFCIVESTAFKRRLNKQL
KRKIMTPVRRSARLRRSDIPNFLREDDRLIDSPTQVEQDIIEGNIGFVPS
KFINTPLNNGWLIEEEEKEPVDEDCACELSFME Run BLAST on NCBI transcript from alignment at sc0001342:42798..43881+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035634 ID=TCONS_00035634|Name=TCONS_00035634|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at sc0001342:42798..43881+ (Clytia hemisphaerica)
ggtTCTCTAAACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTACA
CTTCGCCAATAGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAGAT
TCTGCATCGTTGAATCCACTGCTTTCAAAAGAAGGTATGAATtgttgatt
ttaaaagtttttcaaaagttgtcTCACTTCTTTATCTTTCCtagtgtttg
tttgtttgtttgtttgtttgtttgtaattgTTATTTATCGTTGACATAAT
GTCAGATGATAATGGTGAAGTTTGCCTGTGAATGGCAGTCTTTCTTCGAT
ATTACCTGTTGTTTTCTCTACCTCTCATACAAATTAACAGCTACTCTTTT
CACAGTGTTTCTTCGACGTAGCGTCTAACGTTTGATCCATCGTCATTTTT
TCAGGCTTAACAAACAGTTGAAAAGGAAAATCATGACACCCGTCCGAAGA
TCAGCAAGACTTCGAAGATCGGATATTCCGAATTTCCTTCGAGAAGACGA
TCGTCTCATTGACTCGCCCACTCAAGTTGAACAAGACATTATTGAAGGAA
ATATAGGCTTTGTACCAAGCAAATTTATAAATACTCCTTTGAATAACGGC
TGGTTGATCgaggaagaagaaaaagaaccgGTAGACGAAGATTGCGCATG
CGAATTATCTTTCAtggaatgataaaaaattttttcgattttgtatATAG
AAACACTTGTGAACGATATCTGGTTTTGAATTTGTATATATGGGATAACT
TTGAGTTGTTGGTTATAAATAATCTATTTCAACTACATAGTGATGATAAT
GTTCAGCCATTTCTAAAGTATTTCTCGATATAATTACCagtgaaaacaaa
aatggctgttTATTAGTGTATTGAATTCTTTAGATATTGAACCATGTGGA
TTATGACGTAAGTTCGTGAAGACTCTTTCaggataaaaaatattgaattg
gatttctaaactttctgaTACAGTTACAATATGAGTAACGAAGAAGGCTT
AGTCTTTGATTATCCTCTATTACTCTCTATCATAtgtatctttttcaaaa
acatttcatatGTAAATATGTTGTTTTCTTTCAT Coding sequence (CDS) from alignment at sc0001342:42798..43881+ >TCONS_00035634 ID=TCONS_00035634|Name=TCONS_00035634|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0001342:42798..43881+ (Clytia hemisphaerica)
ggtTCTCTAAACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTACA
CTTCGCCAATAGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAGAT
TCTGCATCGTTGAATCCACTGCTTTCAAAAGAAGGCTTAACAAACAGTTG
AAAAGGAAAATCATGACACCCGTCCGAAGATCAGCAAGACTTCGAAGATC
GGATATTCCGAATTTCCTTCGAGAAGACGATCGTCTCATTGACTCGCCCA
CTCAAGTTGAACAAGACATTATTGAAGGAAATATAGGCTTTGTACCAAGC
AAATTTATAAATACTCCTTTGAATAACGGCTGGTTGATCgaggaagaaga
aaaagaaccgGTAGACGAAGATTGCGCATGCGAATTATCTTTCAtggaat
gaggtTCTCTAAACCGATTGAACTATGCAATTACACCAGGGCGTCGAGTA
CACTTCGCCAATAGAGATAGTCCAATCGATTTCAAATCTTCCATCATCAG
ATTCTGCATCGTTGAATCCACTGCTTTCAAAAGAAGGCTTAACAAACAGT
TGAAAAGGAAAATCATGACACCCGTCCGAAGATCAGCAAGACTTCGAAGA
TCGGATATTCCGAATTTCCTTCGAGAAGACGATCGTCTCATTGACTCGCC
CACTCAAGTTGAACAAGACATTATTGAAGGAAATATAGGCTTTGTACCAA
GCAAATTTATAAATACTCCTTTGAATAACGGCTGGTTGATCgaggaagaa
gaaaaagaaccgGTAGACGAAGATTGCGCATGCGAATTATCTTTCAtgga
atga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035634-exon-sc0001342-1491911889:42798..42931 | TCONS_00035634-exon-sc0001342-1491911889:42798..42931 | Clytia hemisphaerica | exon |
| TCONS_00035634-exon-sc0001342-1510915933:42798..42931 | TCONS_00035634-exon-sc0001342-1510915933:42798..42931 | Clytia hemisphaerica | exon |
| TCONS_00035634-exon-sc0001342-1575043694:42798..42931 | TCONS_00035634-exon-sc0001342-1575043694:42798..42931 | Clytia hemisphaerica | exon |
| TCONS_00035634-exon-sc0001342-1491911889:43202..43881 | TCONS_00035634-exon-sc0001342-1491911889:43202..43881 | Clytia hemisphaerica | exon |
| TCONS_00035634-exon-sc0001342-1510915933:43202..43881 | TCONS_00035634-exon-sc0001342-1510915933:43202..43881 | Clytia hemisphaerica | exon |
| TCONS_00035634-exon-sc0001342-1575043694:43202..43881 | TCONS_00035634-exon-sc0001342-1575043694:43202..43881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001342 | supercontig | sc0001342:42798..43881 + |
Blast
The following BLAST results are available for this feature:
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