TCONS_00035631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035631
Unique NameTCONS_00035631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035631 ID=TCONS_00035631|Name=TCONS_00035631|organism=Clytia hemisphaerica|type=transcript|length=1684bp
AATACTCACACCacatcaacaaaaaaaaacacagatcCACCAACCTATAT
TCATGCGAATACAATcttcaaagtatcgtcaaaactTGGCTCGACATCAA
ACGAGTATAATAACTAGTTGATCCAATCATCTAAAAACACTCTGTATACT
GTAGCTCATGCCACGATATAAATCCATGACTGATACAAGCTAATGCACTT
TGTCTCGCATGATGGAaaaacaaaagagagaattcgaAATCACCAGACCA
CGTTTAAGACTGGGCTCGACTTCCAGTTCAACCTGTTCTTCATCATTAAC
AATAGGCAGTGATGATTTAGTTACAATTGGGTTAACAAGCGTTGAAGATA
ACAAATTTCACCAACAATTACCAACGCACGCGCCACTCCAAAGACGTGAA
ACGTTTCCTCCCATCAACACAAATGCGGCTAGTTTGCTTATCAGTGATTC
TATAGAACTCAATGTTGGAGGGACCGTTTATACGACTACGGGCTGGATAT
TAGCCCGTGAACACACATCATGGCTTGCCAAAAACCTTGAATCGATGGCA
ATGCTTGATAGGCGTGGTCGATATTTTATTGACAGGGATGGAGGCCTGTT
CCGGTATATTTTGGAGTATCTGGGAACAGGAGAGATCCGGATTCCAAATG
ATTTTCCGGATATTGAGTCTTTGCGGAAAGAAGCCACTTTTTATggattg
aaaataatgaaaaggaTGCTGGATAAGCACTTGATAAATCAAGATAACTG
GGATCCAAATAAAGGCCATTATATAACATTGACTGAACATGCAACATACA
ATGTCAAGTTTCGTGATAACCTCAACGTTGTTTTTAAAAGGATTTCCAGT
ATAACTGTTGCAGGGCATGTGAAGAGTTGTCGGAAAGTCTTTGGTAATAA
ATTGTCGTTAGACCGAGATTCGAACGAGAATTTAGATCGGTATTCATGTC
GCATGTTGATTGTACAGGGTAATGAAATGACAGTTTTTGATGTACTGAAG
GAGAATAATTATGAAATGGTTTCGAATAATAAAACTGATGCTGCCTCACT
CGGGCGGACGGGATTGGGCGAGCGAAGAGGTTCGTTAGCAGATTTATCGT
TCGAACAAAATAAGAGATGGATCCATGTGACGAATTATTATTTCAGACGG
AAAAGTGTGAAATGAACATGATAAAGATGCAGAAGTCGTGGAAAAGAGCT
AAATAGGTATGATGAGAATGAGACAGATAAATCATCACCCAATGGACCTT
AATCCAGCAattccttttaaaaaaatttttcgatgcTAAACTCTGGATAT
TCCATAGTCGCACTTGCCCAAATAAAGCGGAGAGGAGGTTAATAAAATTA
ACTATGTAGAACTAAAAGATCGATAgcaacaaaatagaaaaacggCATAT
GTACATATGTATGACAGCTTACCAAAAATCGAATATTTGCTACCAAGTTC
TTCCTCGtttcaacagaaaaaaaattactgaaACAACTTCAACCAAACAT
CTCACAAAGAAAGGATATGATAATTTACAAACAATATGCATGAACCAAGG
CAGGTTTCTTCAATAAAATATTGCAGCTCTAACCAGAATTCACAAGATAT
TTACAATACGACTttcctttagaaaaaaatagccCCATTATAACCCTCTC
TTATAACACCACACCTAAAATCATGAAACTACTA
Run BLAST on NCBI

protein sequence of TCONS_00035631-protein

>TCONS_00035631-protein ID=TCONS_00035631-protein|Name=TCONS_00035631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MMEKQKREFEITRPRLRLGSTSSSTCSSSLTIGSDDLVTIGLTSVEDNKF
HQQLPTHAPLQRRETFPPINTNAASLLISDSIELNVGGTVYTTTGWILAR
EHTSWLAKNLESMAMLDRRGRYFIDRDGGLFRYILEYLGTGEIRIPNDFP
DIESLRKEATFYGLKIMKRMLDKHLINQDNWDPNKGHYITLTEHATYNVK
FRDNLNVVFKRISSITVAGHVKSCRKVFGNKLSLDRDSNENLDRYSCRML
IVQGNEMTVFDVLKENNYEMVSNNKTDAASLGRTGLGERRGSLADLSFEQ
NKRWIHVTNYYFRRKSVK
Run BLAST on NCBI

transcript from alignment at sc0001341:31873..33556

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035631 ID=TCONS_00035631|Name=TCONS_00035631|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at sc0001341:31873..33556 (Clytia hemisphaerica)
TAGTAGTTTCATGATTTTAGGTGTGGTGTTATAAGAGAGGGTTATAATGG
ggctatttttttctaaaggaaAGTCGTATTGTAAATATCTTGTGAATTCT
GGTTAGAGCTGCAATATTTTATTGAAGAAACCTGCCTTGGTTCATGCATA
TTGTTTGTAAATTATCATATCCTTTCTTTGTGAGATGTTTGGTTGAAGTT
GTttcagtaattttttttctgttgaaaCGAGGAAGAACTTGGTAGCAAAT
ATTCGATTTTTGGTAAGCTGTCATACATATGTACATATGccgtttttcta
ttttgttgcTATCGATCTTTTAGTTCTACATAGTTAATTTTATTAACCTC
CTCTCCGCTTTATTTGGGCAAGTGCGACTATGGAATATCCAGAGTTTAgc
atcgaaaaatttttttaaaaggaatTGCTGGATTAAGGTCCATTGGGTGA
TGATTTATCTGTCTCATTCTCATCATACCTATTTAGCTCTTTTCCACGAC
TTCTGCATCTTTATCATGTTCATTTCACACTTTTCCGTCTGAAATAATAA
TTCGTCACATGGATCCATCTCTTATTTTGTTCGAACGATAAATCTGCTAA
CGAACCTCTTCGCTCGCCCAATCCCGTCCGCCCGAGTGAGGCAGCATCAG
TTTTATTATTCGAAACCATTTCATAATTATTCTCCTTCAGTACATCAAAA
ACTGTCATTTCATTACCCTGTACAATCAACATGCGACATGAATACCGATC
TAAATTCTCGTTCGAATCTCGGTCTAACGACAATTTATTACCAAAGACTT
TCCGACAACTCTTCACATGCCCTGCAACAGTTATACTGGAAATCCTTTTA
AAAACAACGTTGAGGTTATCACGAAACTTGACATTGTATGTTGCATGTTC
AGTCAATGTTATATAATGGCCTTTATTTGGATCCCAGTTATCTTGATTTA
TCAAGTGCTTATCCAGCAtccttttcattattttcaatccATAAAAAGTG
GCTTCTTTCCGCAAAGACTCAATATCCGGAAAATCATTTGGAATCCGGAT
CTCTCCTGTTCCCAGATACTCCAAAATATACCGGAACAGGCCTCCATCCC
TGTCAATAAAATATCGACCACGCCTATCAAGCATTGCCATCGATTCAAGG
TTTTTGGCAAGCCATGATGTGTGTTCACGGGCTAATATCCAGCCCGTAGT
CGTATAAACGGTCCCTCCAACATTGAGTTCTATAGAATCACTGATAAGCA
AACTAGCCGCATTTGTGTTGATGGGAGGAAACGTTTCACGTCTTTGGAGT
GGCGCGTGCGTTGGTAATTGTTGGTGAAATTTGTTATCTTCAACGCTTGT
TAACCCAATTGTAACTAAATCATCACTGCCTATTGTTAATGATGAAGAAC
AGGTTGAACTGGAAGTCGAGCCCAGTCTTAAACGTGGTCTGGTGATTtcg
aattctctcttttgttttTCCATCATGCGAGACAAAGTGCATTAGCTTGT
ATCAGTCATGGATTTATATCGTGGCATGAGCTACAGTATACAGAGTGTTT
TTAGATGATTGGATCAACTAGTTATTATACTCGTTTGATGTCGAGCCAag
ttttgacgatactttgaagATTGTATTCGCATGAATATAGGTTGGTGgat
ctgtgtttttttttgttgatgtGGTGTGAGTATT

Coding sequence (CDS) from alignment at sc0001341:31873..33556

>TCONS_00035631 ID=TCONS_00035631|Name=TCONS_00035631|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at sc0001341:31873..33556 (Clytia hemisphaerica)
TCATTTCACACTTTTCCGTCTGAAATAATAATTCGTCACATGGATCCATC
TCTTATTTTGTTCGAACGATAAATCTGCTAACGAACCTCTTCGCTCGCCC
AATCCCGTCCGCCCGAGTGAGGCAGCATCAGTTTTATTATTCGAAACCAT
TTCATAATTATTCTCCTTCAGTACATCAAAAACTGTCATTTCATTACCCT
GTACAATCAACATGCGACATGAATACCGATCTAAATTCTCGTTCGAATCT
CGGTCTAACGACAATTTATTACCAAAGACTTTCCGACAACTCTTCACATG
CCCTGCAACAGTTATACTGGAAATCCTTTTAAAAACAACGTTGAGGTTAT
CACGAAACTTGACATTGTATGTTGCATGTTCAGTCAATGTTATATAATGG
CCTTTATTTGGATCCCAGTTATCTTGATTTATCAAGTGCTTATCCAGCAt
ccttttcattattttcaatccATAAAAAGTGGCTTCTTTCCGCAAAGACT
CAATATCCGGAAAATCATTTGGAATCCGGATCTCTCCTGTTCCCAGATAC
TCCAAAATATACCGGAACAGGCCTCCATCCCTGTCAATAAAATATCGACC
ACGCCTATCAAGCATTGCCATCGATTCAAGGTTTTTGGCAAGCCATGATG
TGTGTTCACGGGCTAATATCCAGCCCGTAGTCGTATAAACGGTCCCTCCA
ACATTGAGTTCTATAGAATCACTGATAAGCAAACTAGCCGCATTTGTGTT
GATGGGAGGAAACGTTTCACGTCTTTGGAGTGGCGCGTGCGTTGGTAATT
GTTGGTGAAATTTGTTATCTTCAACGCTTGTTAACCCAATTGTAACTAAA
TCATCACTGCCTATTGTTAATGATGAAGAACAGGTTGAACTGGAAGTCGA
GCCCAGTCTTAAACGTGGTCTGGTGATTtcgaattctctcttttgttttT
CCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020868XLOC_020868Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035631-proteinTCONS_00035631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035631-exon-sc0001341-1491911889:31873..33556TCONS_00035631-exon-sc0001341-1491911889:31873..33556Clytia hemisphaericaexon
TCONS_00035631-exon-sc0001341-1510915933:31873..33556TCONS_00035631-exon-sc0001341-1510915933:31873..33556Clytia hemisphaericaexon
TCONS_00035631-exon-sc0001341-1575043694:31873..33556TCONS_00035631-exon-sc0001341-1575043694:31873..33556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001341supercontigsc0001341:31873..33556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0272337	0	0.0324364	0.0768951	2.41204	2.31602	1.13505	0.954033	1.53522	1.08929	0.591878	0.747573	0.669238	0.64491	0.668082	0.999383	2.30117	2.06019	1.60463	1.76954	0.303362	0.927691	0.18077	0.184381	0.0989431	0.0703965	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051260 protein homooligomerization
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00035631 vs. Swiss-Prot (Human)
Match: KCD16 (BTB/POZ domain-containing protein KCTD16 OS=Homo sapiens GN=KCTD16 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.099e-22
Identity = 76/285 (26.67%), Postives = 121/285 (42.46%), Query Frame = 2 
Query:  404 FPPINTNAASLLISDSIELNVGGTVYTTTGWILAREHTSWLAKNLESM------AMLDRRGRYFIDRDGGLFRYILEYLGTGEIRIPNDFPDIESLRKEATFYGLKIMKRMLDKHLINQ--------DNWDPNKGH------------------YITLTEHATYNVKFRDNLNVVFKRISSITVAGHVKSCRKVFGNKLSLDRDSNENLDRYSCRMLIVQGNEMTVFDVLKENNYEMVSNNKTDAASLGRTGLGERRGSLADLSFEQNKRWIHVTNYYFRRKSVK 1162
            +P    +A      + +ELNVGG VY T    L     S L K              D +GR+FIDRDG LFRYIL+YL   ++ +P+ FP+   L++EA ++ L  + ++L    I Q        D  D ++G                   +IT+    +  +      +  F+R+  I V G +   ++VFG  L+  RD +   +RY+ R  +   +    FD+L E  + MV+ N +  AS                 +  +K W   T Y F R+  +
Sbjct:   11 YPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFIN-------------QYTDDKIWSSYTEYVFYREPSR 282
The following BLAST results are available for this feature:
BLAST of TCONS_00035631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCD163.099e-2226.67BTB/POZ domain-containing protein KCTD16 OS=Homo s... [more]
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