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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035619 ID=TCONS_00035619|Name=TCONS_00035619|organism=Clytia hemisphaerica|type=transcript|length=1264bp
CGATCGTTTCGTTCGTCTtgattgattgattgattctatTGTTTGTTTCA
TCGtttccaatgacgtcatcggttccAAATTATTTCCACattcccaGCAC
GGCAGCACGCATGAGAAGTTACACCCGTCGTTTTTGACGCCGCTTCGACG
ATTACGTTCTTTATTCATTCCGTCTCTACATTCTTGTTTGCGTTCAAACA
TTACTACCTTCATTTTGACTTGTTTTTAGATGTATTTTCACCACTTCACT
AACTTGACTattattacacgcttttttttataagaatgttgtaaatccat
ttcatcatggatattctttaacttttttgggaaaatcatcctaaaatatt
cttacagcacattcttaggttaggatcctaattcatactagatttaacat
ttagtacatacgtctcaagcataaaatagcacttttgtaaaaggagtgag
cctaacttgggataattgataatttatgattgaaaatgctcttaaaatgg
taTTAGTAGCgaaatttcatgatggtgatattcttagcatattcttagtt
ttttggccattttcatcatggacattcttgtaaagtgtattcttataaaa
aaaaagcgtgtacgtcAACCGTCACTAGTTTTGGTGGCGTGCCTATTCTT
ACGCCCTAAGGTTTCTGCCTTATGGATTACCTTTGTTGAATATGAAAAAG
AGTACAGTGCTAAAACTGATGTCGCTATTGATTTcgattggatcatttcc
cgtGTAAATATCCGACTCTTTTCGCTTACTCGGTGAAATTTTGTTCAGTC
AATCAGtcagggaaaaaaattttagataCTATTTTTAGTGGAAGACCCTG
TCAACAGTGACCTCGGTGAAATGAATGAATTTTTCTAACCTTTACTCTCA
GGATTTTTTGTATGGTTTAGGTTTGATTAAATTATCTAAGTACTGTCAAA
GTTTTACGGTCTTTTTCGGGAGAAACTCATGGGTGGTAAATATTCGAtga
tttcaatttgaaattgcTCTTCATTTCAAGCCGATGAACGTTTTTTGGTa
tatatatgaaaaatatatatattgtatttagataagaatattttattgta
tAGAATTAATTGTAAATAGTATTTTCTCtcattaatttatttttctttat
aagaaattacAAATCGACCTTAGGCGACTTGAGACGAAAGAAAGAAAGCC
TGAAAATCTTGCTTTAATTCTTTTCTGCTTAACTGTTTGGGAGAGAGAGA
AATATCGCCcctag Run BLAST on NCBI transcript from alignment at sc0001340:38973..41226+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035619 ID=TCONS_00035619|Name=TCONS_00035619|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at sc0001340:38973..41226+ (Clytia hemisphaerica)
CGATCGTTTCGTTCGTCTtggtaagaaaaatatcaactttttcacgtttt
ttttagggtgggaatattttttggagtttgaaagaattttttttctatta
ttgcGAGAagtgttgaaacttttttttttatttttttaaatagaagtgaa
aagttatttaaaaagtCTTTAAATTTTCAGTCGGATAAATTTAATCTTTT
CGGAGTTCGAATGAATTAAACGGATGAATTGATTTCGATAttttgattga
gatttttcatcgCATTTGAGCAGACATATTTTGGAGACGGTTGAAATTTG
CAAATAGAtgattttttgtgaaatgttttctcaggttgttatgaatttat
tttttggtgGAGAAAAAAATCGTCGtttatatttgattttatcGTAAGTT
TTTTAAGATATTGTTCAtgtgtttcaaatgtttttcatttgatatttatt
tttcagattgattgattgattctatTGTTTGTTTCATCGtttccaatgac
gtcatcggttccAAATTATTTCCACGTAAGTATATTGAATATGTATTTGG
CTTCCAGCTGATGTGAAATTGCCTAAAGCATAAATTTTTCTGCATACCGG
AATTTCTTGTAAAAAGTGAATCTATTCAAAAAAACATAGAAAGGAGGGCT
TggttagcctgtaccaaactcttttTGGTGGACTGAAAAGACCAAGGGAA
ATTCAGTATGATATACAATTCAGACTTTCTTGTGACAGAGACGAATCCAC
GCAAGTCTCTGTTGTAAAGTGTTGAATTATCTTCAATTAGTCGAATAAAT
GCAATTGTTTCTTTCTGTAGTAAAAATAGCgtataaagcctaaaatacct
caatttgaCATTGAAGTAAGAAAAGAGGTTATACCTCAAAGAAGTTATTa
actagttcttataaaaagactcCTTATTCCgtgtttttcaaacttttcca
cCACATCAGATTCTAAGCATTCTCATTAGCcgctttttaccatttttata
aaaactatttATTCATCTTCGAGTCAGCAACTTTTGTTTTGCAATTAAcc
tccaaaattttcaaattttctatttttagattcccaGCACGGCAGCACGC
ATGAGAAGTTACACCCGTCGTTTTTGACGCCGCTTCGACGATTACGTTCT
TTATTCATTCCGTCTCTACATTCTTGTTTGCGTTCAAACATTACTACCTT
CATTTTGACTTGTTTTTAGATGTATTTTCACCACTTCACTAACTTGACTa
ttattacacgcttttttttataagaatgttgtaaatccatttcatcatgg
atattctttaacttttttgggaaaatcatcctaaaatattcttacagcac
attcttaggttaggatcctaattcatactagatttaacatttagtacata
cgtctcaagcataaaatagcacttttgtaaaaggagtgagcctaacttgg
gataattgataatttatgattgaaaatgctcttaaaatggtaTTAGTAGC
gaaatttcatgatggtgatattcttagcatattcttagttttttggccat
tttcatcatggacattcttgtaaagtgtattcttataaaaaaaaagcgtg
tacgtcAACCGTCACTAGTTTTGGTGGCGTGCCTATTCTTACGCCCTAAG
GTTTCTGCCTTATGGATTACCTTTGTTGAATATGAAAAAGAGTACAGTGC
TAAAACTGATGTCGCTATTGATTTcgattggatcatttcccgtGTAAATA
TCCGACTCTTTTCGCTTACTCGGTGAAATTTTGTTCAGTCAATCAGtcag
ggaaaaaaattttagataCTATTTTTAGTGGAAGACCCTGTCAACAGTGA
CCTCGGTGAAATGAATGAATTTTTCTAACCTTTACTCTCAGGATTTTTTG
TATGGTTTAGGTTTGATTAAATTATCTAAGTACTGTCAAAGTTTTACGGT
CTTTTTCGGGAGAAACTCATGGGTGGTAAATATTCGAtgatttcaatttg
aaattgcTCTTCATTTCAAGCCGATGAACGTTTTTTGGTatatatatgaa
aaatatatatattgtatttagataagaatattttattgtatAGAATTAAT
TGTAAATAGTATTTTCTCtcattaatttatttttctttataagaaattac
AAATCGACCTTAGGCGACTTGAGACGAAAGAAAGAAAGCCTGAAAATCTT
GCTTTAATTCTTTTCTGCTTAACTGTTTGGGAGAGAGAGAAATATCGCCc
ctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035619-exon-sc0001340-1491911889:38973..38992 | TCONS_00035619-exon-sc0001340-1491911889:38973..38992 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1510915933:38973..38992 | TCONS_00035619-exon-sc0001340-1510915933:38973..38992 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1575043694:38973..38992 | TCONS_00035619-exon-sc0001340-1575043694:38973..38992 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1491911889:39429..39497 | TCONS_00035619-exon-sc0001340-1491911889:39429..39497 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1510915933:39429..39497 | TCONS_00035619-exon-sc0001340-1510915933:39429..39497 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1575043694:39429..39497 | TCONS_00035619-exon-sc0001340-1575043694:39429..39497 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1491911889:40052..41226 | TCONS_00035619-exon-sc0001340-1491911889:40052..41226 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1510915933:40052..41226 | TCONS_00035619-exon-sc0001340-1510915933:40052..41226 | Clytia hemisphaerica | exon |
| TCONS_00035619-exon-sc0001340-1575043694:40052..41226 | TCONS_00035619-exon-sc0001340-1575043694:40052..41226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001340 | supercontig | sc0001340:38973..41226 + |
Blast
The following BLAST results are available for this feature:
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