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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035600 ID=TCONS_00035600|Name=TCONS_00035600|organism=Clytia hemisphaerica|type=transcript|length=837bp
ATAAGAACGAAACcgcgcaatctgattggctgaaatctgaaattctattt
ttcgCGCCGTCGCTATatgcaaaatttttcattttactttttgGAGGCGG
CAGAAAGAAGCAACAAGAACTGCAAGAAGTTAGTATTTTCCTATCTTTTC
TTGTAGTTGCTTTGCCAATCAGCTGACTGATGATTTTTAATGGAAATGTT
AAGATAAGTTGATTGATAGTATGAATGGCTCCTATTTTGGAAACAAAAGT
ACTTTAATTGTGGATAAAAGGgTATCGTAAAACGAATGATGGAATCCGAC
AAAGAAGAATTCAAATCGCAGTCGTGGGGTgtataatgaatttttttctc
aagaacaGTTCGAATTTGCATTCGAATACGGATAAATGGTACGTGGTCGA
AAACTGTAGTGGATGATATAGTGTAGTGGAAAATATTTTCGCATCGTTGT
TCCGTCTGAAACCTGGATATCACCATTTTAGACATTTGctacgaaatttt
gaattgcatCGGAATTGTATGGTCTACCTTCTGTTGGATGGTCAAAATAG
GGTTTAATTTTATCGGACAAATCggagaatatttttgttttaacttttaa
agtattttattcGTCAAACCTGTCACAAGTGGTTCTTAtgcttttaaaaa
tgtttaacgAAATCTTGAATAGCACATCGGACATCTTTTATATGCTGATA
aggcgaaaaagaaaaaatgtagtgtttccggaatgcgggtgaagtaAAAA
AGCTCCCATTCGGCCGgccggaatttttttttctgcgaTTTCTGATAACT
TTATATAGAttattgaaatagaactttaaaggaTAAC Run BLAST on NCBI transcript from alignment at sc0001339:63064..66813+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035600 ID=TCONS_00035600|Name=TCONS_00035600|organism=Clytia hemisphaerica|type=transcript|length=3750bp|location=Sequence derived from alignment at sc0001339:63064..66813+ (Clytia hemisphaerica)
ATAAGAACGAAACcgcgcaatctgattggctgaaatctgaaattctattt
ttcgCGCCGTCGCTATatgcaaaatttttcattttactttttgGAGGCGG
CAGAAAGAAGCAACAAGAACTGCAAGAAGTTAGTATTTTCCTATCTTTTC
TTGTAGTTGCTTTGCCAATCAGCTGACTGATGATTTTTAATGGAAATGTT
AAGATAAGTTGATTGATAGTATGAATGGCTCCTATTTTGGAAACAAAAGT
ACTTTAATTGTGGATAAAAGGggtaaaaattttaacttttttggttGTTC
TAATCTAGCTaaacaaattatattttcatcAGCTCTTATCTGACAAAGTC
ATTAGAGAAGACTCTAAGATATTGTATATAGTTTTAACAAGCctagactt
tttgataaaatatacCAAAGTTAGTCTTCAAACAAAATGAAAGTAGACAT
ACAGGCACAACAAGTGCCTATATATTTATTTAGAGTATTTTTGTAGTGGG
AAATTTTgagacaaatttttatatatttttgcttctttttcaaGTATAGT
AGTGATATGATATTCATACTACAACTCTGTCTAGACATCTGTACTTGACA
GTCTTGTGCTGTTGTGCCAAAGAGGCAGGCCAGGTATCCCCAAAATGCAC
TGGATACAACATACAGAGCGAGTGCGTGTAAAAATGGTACATCACGGTAA
AATATTAGTCTTAACACTGACCAAGGGGCCATCCATTTAGTACTACATAC
TGAGGGGTAGAGGGGGGTTAAGCAAAAGTACATTCATTTGTTTAAATGAC
AACATTTCTATTGTTTCTTGCGTTCAACAAAAGGGGGATATCTATTTATG
ATAATATCATGGCAAAAAACTTTTATTGTGAATGCTATATGGATGACGCC
AAAGTCTGAAAGTGTATAATTTAGTTTTGCACGTGACTTTTTCTGTTTCC
AATCCAGTGCACATCTGATAGGgttgttattttttgtcattatatTGATG
TTGAAGTTAGTGGCTGGAgtgtttcattattttcaatgaTATGATAATAT
TGGTTACAGTTGGCTAGAAAAGGTATGGTCATAACGATGGCTAGCGTACT
CTCTCGTGTACTACCAAATCGCTGGGGGTTGGAATAAGTGGGAATTCCTA
aatgtaaaatttgtaaaaagaaggcttatacagcagaattagggcaaaag
agggaactttcaaaaacatttttccaaaaattaatgagCGGAGGGGTtga
aataagaatgtcctgggtgaaaNcaaaagagggaactttcaaaaacattt
ttccaaaaattaatgagCAGAGGGGTTGAAATAAGTATATcctgggtgaa
aaaattaattagctgGGGCGCTTATTAGGTATCAGAGAGTAcataatttc
acttttttttttaaattttgttacaatttttcacAGAGAATAGATTtgct
caaatgttttttttttcaaataacgtAGTGCTTCATGGTCACTAAGGTGG
CTAGAATAGACATGGTCATTTCGACGGCTAGCTTTacgtaatttcaattt
tttttggagaattttgttacaatttttcatagagttttgctcaaatgttt
ttttttcaaataacgtAGTGGTTCATGGTCACTAAGGTGGCTGgaatagg
catggtcatttcgatggctagctttacgtaatttcaatttttttggataa
ttttgttacaatttttcatagagttttgctcaaatgttttttttcttcaa
ataaggTAGTGGTTCATGGTCACTAAGGTGGCTAgaataggcatggtcat
ttcgatggctagctttacgtaatttcaatttttttggagaattttgttac
aatttttcatagagttttgctcaaatgtttttttttttcaaataacgtAG
TGGTTCATGGTCACTAAGGTGGCTAGAATAGACATGGTCACTTCGATGGC
TAGCTTTacgtaatttcaatttttttggagaattttgttacaatttttca
tagagttttgctcaaatgtttttttCTTCAAATAACGTAGTGGTTCATGG
TCACTAAGGTGGCTAgaataggcatggtcatttcgatggctagctttacg
taatttcaaattttttggagaATTTTGTTCAAATAACATGGTGGTTCTTG
TTCACACAGGTTACTAGGATCGTCCTTTAAGTGATGGCACTACCAATTTT
ATTTGATGtctattttagcttttttttgaagattttgcaaaatgattact
ttttaatggctgGTCTTccataattttgaatttttttgatacATTCATTA
CAATTTGTTAAAAGATTTGATCAAATTAATTAATATTCTAATGGTTCTTG
GTCACAGAAAAGAAAAGCAATGGTCTTAAATGGCTAGCTTTACCTAATTT
AgagattttgacaaaaaatgatttGGTAGTAGCCATCTATTATCTTTTAC
ACAATCACAAAACCttgcaaaattaattttgggCTGTTTCAGGCTGTTCA
GGCTAGAATTTCCTCTTTTTaggcaattttaaaatttgaaactttacTTG
CCGGTGTTTTCAAATAATGATTTCCttcaatgttttttgttttaaaatta
aattagatAAAAAAGCAGTATGATGTAGTTCCCAATGCTATCAATAATGG
TAGGACTAGTACTAGTAGTAGTCATGTAGAGTAAGAATACATAATACAGT
AAGGGAAAGTAtaaatttttacctttttttaatgTGTCTAAAACTGATAG
AAATTAGGGATGTTATAGCTAGTTTTATGCAAAATTGACATGAAAAGCAA
AGGTAATTTTCTTTAGTGTAACTTCCAAAAGCAAAGGTAATTTTCTTATA
TAGTGTAACTTCCAGTGGGACTTCATTCATATATTCAGCACAGAAAGTTA
TTTACTGTTAGTTGACTCTTTCTTATTGAAGGCTGCTACATCTTTTCTTG
GGATTTCGAAATTGCTCTAATATACCTTTCATTCCGTAAAGTGAAATTTT
TAcctctttggaaagaaaaaattgagtggacgattttaaagctttgttaA
GCGAAGATTAgcaaagtttttcttctttttgtccAGTGAAAATTGTCCTT
ATTTTTCAGCGTCCTTTTTTCCCTGGGTTGGTATTTTTATCCTATTAATA
TCGTGTTATAATGTAATTTATTCTATATTTTCTAGTATCGTAAAACGAAT
GATGGAATCCGACAAAGAAGAATTCAAATCGCAGTCGTGGGGTgtataat
gaatttttttctcaagaacaGTTCGAATTTGCATTCGAATACGGATAAAT
GGTACGTGGTCGAAAACTGTAGTGGATGATATAGTGTAGTGGAAAATATT
TTCGCATCGTTGTTCCGTCTGAAACCTGGATATCACCATTTTAGACATTT
GctacgaaattttgaattgcatCGGAATTGTATGGTCTACCTTCTGTTGG
ATGGTCAAAATAGGGTTTAATTTTATCGGACAAATCggagaatatttttg
ttttaacttttaaagtattttattcGTCAAACCTGTCACAAGTGGTTCTT
AtgcttttaaaaatgtttaacgAAATCTTGAATAGCACATCGGACATCTT
TTATATGCTGATAaggcgaaaaagaaaaaatgtagtgtttccggaatgcg
ggtgaagtaAAAAAGCTCCCATTCGGCCGgccggaatttttttttctgcg
aTTTCTGATAACTTTATATAGAttattgaaatagaactttaaaggaTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035600-exon-sc0001339-1491911889:63064..63335 | TCONS_00035600-exon-sc0001339-1491911889:63064..63335 | Clytia hemisphaerica | exon |
| TCONS_00035600-exon-sc0001339-1510915933:63064..63335 | TCONS_00035600-exon-sc0001339-1510915933:63064..63335 | Clytia hemisphaerica | exon |
| TCONS_00035600-exon-sc0001339-1575043694:63064..63335 | TCONS_00035600-exon-sc0001339-1575043694:63064..63335 | Clytia hemisphaerica | exon |
| TCONS_00035600-exon-sc0001339-1491911889:66249..66813 | TCONS_00035600-exon-sc0001339-1491911889:66249..66813 | Clytia hemisphaerica | exon |
| TCONS_00035600-exon-sc0001339-1510915933:66249..66813 | TCONS_00035600-exon-sc0001339-1510915933:66249..66813 | Clytia hemisphaerica | exon |
| TCONS_00035600-exon-sc0001339-1575043694:66249..66813 | TCONS_00035600-exon-sc0001339-1575043694:66249..66813 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001339 | supercontig | sc0001339:63064..66813 + |
Blast
The following BLAST results are available for this feature:
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