TCONS_00035592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035592
Unique NameTCONS_00035592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035592 ID=TCONS_00035592|Name=TCONS_00035592|organism=Clytia hemisphaerica|type=transcript|length=923bp
gtAAGAAAAACAGATCTGAAGTTTTCAACAATTTCTATGGGTCTATTGCa
gagaaaacaaaacaacaaatccCTAGGACTGCTAAAACATTTTCAGATTA
TTTAGGTGTTCAGAAATTATACTCTATTTATCTCAACAGGATTACTCCTG
AATCTGTTCTTAAGTTGATCAATGAACTTGACGGACTTAAAGCTTCAGGC
CCATCCAGTATCCCAACTTCTTTCCTAAAGATGATAGCTCCTACAGCAAG
CACTGTCCTTGCgcacattttcaattttctatcCATGAAGGAGTTTATCC
AGACTGTTTGAAGAGAGCAACAGTCAAACCTCTACACAAAAAAGACTCTA
AACTTGATGTTGGCANNNNNNNNNNNNNNNNNNCTTCAGGCCCATCCAGT
ATCCCAACTTCTTTCCTAAAGATGATAGCTCCTACAGCAAGCACTGTCCT
TGCgcacatttttaatttttctatacATGAAGGAGTTTATCCAGACTGTT
TAAAGAGAGCAACAGTCAAACCTCTACACAAAAAAGACTCTAAACTTGAT
GTTGGCAATTACAGGCCTATTTCTTTACTTTCtaatataaataaaatctt
tgaaaaacttctACATTTTAGACTTTCTCGCTTCTTTGaagataataata
ttttttcatctaaacaATTCGGCTTTAGGAAAGGCCACAGTACTAATCAT
GCTGTAGTTGCTCTCACTGAACTGGTAAGGAAAGCTTTGGACTCTGGACA
GATTGCTGCAGGGGTTttcattgatttaaaaaaagcattTGACACTGTTG
ATCACGATATCCTCCTCAGCAAACTTGAACACTATGGAATAAGAGGGCCT
GCCCTAAATATTCTCAAATCATACCTATCAGGTCGAGAGCAATGTGTGGA
AATCAGAAATACATCTTCAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00035592-protein

>TCONS_00035592-protein ID=TCONS_00035592-protein|Name=TCONS_00035592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MIAPTASTVLAHIFNFSIHEGVYPDCLKRATVKPLHKKDSKLDVGNYRPI
SLLSNINKIFEKLLHFRLSRFFEDNNIFSSKQFGFRKGHSTNHAVVALTE
LVRKALDSGQIAAGVFIDLKKAFDTVDHDILLSKLEHYGIRGPALNILKS
YLSGREQCVEIRNTSSK
Run BLAST on NCBI

transcript from alignment at sc0001335:43788..44710

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035592 ID=TCONS_00035592|Name=TCONS_00035592|organism=Clytia hemisphaerica|type=transcript|length=923bp|location=Sequence derived from alignment at sc0001335:43788..44710 (Clytia hemisphaerica)
ATTTTGAAGATGTATTTCTGATTTCCACACATTGCTCTCGACCTGATAGG
TATGATTTGAGAATATTTAGGGCAGGCCCTCTTATTCCATAGTGTTCAAG
TTTGCTGAGGAGGATATCGTGATCAACAGTGTCAaatgctttttttaaat
caatgaaAACCCCTGCAGCAATCTGTCCAGAGTCCAAAGCTTTCCTTACC
AGTTCAGTGAGAGCAACTACAGCATGATTAGTACTGTGGCCTTTCCTAAA
GCCGAATtgtttagatgaaaaaatattattatcttCAAAGAAGCGAGAAA
GTCTAAAATGTagaagtttttcaaagattttatttatattaGAAAGTAAA
GAAATAGGCCTGTAATTGCCAACATCAAGTTTAGAGTCTTTTTTGTGTAG
AGGTTTGACTGTTGCTCTCTTTAAACAGTCTGGATAAACTCCTTCATgta
tagaaaaattaaaaatgtgcGCAAGGACAGTGCTTGCTGTAGGAGCTATC
ATCTTTAGGAAAGAAGTTGGGATACTGGATGGGCCTGAAGNNNNNNNNNN
NNNNNNNNTGCCAACATCAAGTTTAGAGTCTTTTTTGTGTAGAGGTTTGA
CTGTTGCTCTCTTCAAACAGTCTGGATAAACTCCTTCATGgatagaaaat
tgaaaatgtgcGCAAGGACAGTGCTTGCTGTAGGAGCTATCATCTTTAGG
AAAGAAGTTGGGATACTGGATGGGCCTGAAGCTTTAAGTCCGTCAAGTTC
ATTGATCAACTTAAGAACAGATTCAGGAGTAATCCTGTTGAGATAAATAG
AGTATAATTTCTGAACACCTAAATAATCTGAAAATGTTTTAGCAGTCCTA
GggatttgttgttttgttttctctGCAATAGACCCATAGAAATTGTTGAA
AACTTCAGATCTGTTTTTCTTac

Coding sequence (CDS) from alignment at sc0001335:43788..44710

>TCONS_00035592 ID=TCONS_00035592|Name=TCONS_00035592|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0001335:43788..44710 (Clytia hemisphaerica)
TTTTGAAGATGTATTTCTGATTTCCACACATTGCTCTCGACCTGATAGGT
ATGATTTGAGAATATTTAGGGCAGGCCCTCTTATTCCATAGTGTTCAAGT
TTGCTGAGGAGGATATCGTGATCAACAGTGTCAaatgctttttttaaatc
aatgaaAACCCCTGCAGCAATCTGTCCAGAGTCCAAAGCTTTCCTTACCA
GTTCAGTGAGAGCAACTACAGCATGATTAGTACTGTGGCCTTTCCTAAAG
CCGAATtgtttagatgaaaaaatattattatcttCAAAGAAGCGAGAAAG
TCTAAAATGTagaagtttttcaaagattttatttatattaGAAAGTAAAG
AAATAGGCCTGTAATTGCCAACATCAAGTTTAGAGTCTTTTTTGTGTAGA
GGTTTGACTGTTGCTCTCTTTAAACAGTCTGGATAAACTCCTTCATgtat
agaaaaattaaaaatgtgcGCAAGGACAGTGCTTGCTGTAGGAGCTATCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020840XLOC_020840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035592-proteinTCONS_00035592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035592-exon-sc0001335-1491911889:43788..44710TCONS_00035592-exon-sc0001335-1491911889:43788..44710Clytia hemisphaericaexon
TCONS_00035592-exon-sc0001335-1510915933:43788..44710TCONS_00035592-exon-sc0001335-1510915933:43788..44710Clytia hemisphaericaexon
TCONS_00035592-exon-sc0001335-1575043694:43788..44710TCONS_00035592-exon-sc0001335-1575043694:43788..44710Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001335supercontigsc0001335:43788..44710 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.493425	0.628339	1.28005	5.25695	4.24636	1.95628	3.02754	1.02567	2.24047	1.94557	0.996926	1.51297	1.50601	0.760886	0.770412	0.98394	0.476633	0.943274	0.691536	0.832057	0.549127	0.060032	0.355851	1.82279	2.3086	0.532616	0.661554	0.420866	0.698249
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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