TCONS_00035584 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035584
Unique Name	TCONS_00035584
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2352

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001335:45395..50940-

transcript sequence

>TCONS_00035584 ID=TCONS_00035584|Name=TCONS_00035584|organism=Clytia hemisphaerica|type=transcript|length=2352bp
aaaatatatgggacttttttgaaatccaCACTATTCTTTAGAAAAACCCT
TCTCCCCAGTCTACAAAGCTGGTCCTGTGCAGAGGCAAAACAACCACCAC
AGCTTTGTAAACAGGGGGGAGGATTTTCACTTGTTTTGAGCTCAACTAGA
TAGAAAAAGTCTCATTATATTATGCACAagattgtctgaatttttaaaaa
aaaatttgaaagagctTTCCCCACCACAtgcgaaaattttcttttttaaa
tggcTATCATGGCTTCTTCCCGCCAGAAAAAAGCCGTGTGCTTGCATAGC
AACAAAATTAGAGTCCCTAGCAACAAGATGGCAGACTAAAAATGGCggga
aaaaatgtaaacaaagggTAATCTGATCCTTTCTCAGGGGGGAGTGGCAA
TTTTACAACCCTTTCACACATTTAAAAAGTAAGCAAAGAGTAATCTGATC
TTTTCTGAAGAGGTAGTGCCAATTTTACAAACCTTTTACaaataaaaaaa
tttcaataaattgcTCTGTATTTGTAACTAAAAATTACAAATGGATGACA
CAAGTGATTTATCGCAATGCGTGGTCAACTTAAACGCCTCTACCCCTGTA
CCAAACCGAGACCTTGAATCGTATGATGCTGCCCTTGGACGAGACAGTGA
TTCCCAGGTTTCCACAACATCAGCACAAGGTCTAGACACTAGCGCCACTG
CAAGAAGTTCCCGTTCCAAGAaaccaaacaaaacaaaaggcaAAGGTGAA
AAtagcaataaaaacaaaaagaaaaacccaCGTGAAGCATACTTGATTAC
GTACTCTCAGGCTGATGTTGTGAAAGTCCCGGGACGCGAGCACTTTGCCA
ATATGGTGGTCCAAGAATTTGACAGAAATGATTCTGTTTCAGAGAAGTGG
GTTGTATCAGCAGAATTGCACCGAAATCATGGCATTCACTACCACCTCGC
TTTGAAATTAAAGAAACCACGACGGTTTAAGGAAGTTCGCAAtgcaatca
aaaataaatatgacaTTGATCTTGACTTTCAAGAATGGCATAGTAATTAT
CATGATGCCTTTTCATATGTTGTTAAGTTTGATTCCCACTATGTAACAAG
TCCTAGACACGTTATTTTGTCAAACCCACCCAGAACAACAAAGGCAACAG
AGGCTAAGCGTGCCCAAGCTCAACATAGTAGTGAAGCACCTCCAAAGCGC
AAGAAGAGTAATTTGCCACCCAAGTTAGGCCGGGAAGATGTGGGAAATAT
CATCCGAGAAAATGGTATCAAGTCGGTTAAAGAACTGTTCTCTCTAGCCC
ATGCCCAAGCAAAGGAGGGTAAAACTGATTTGAGAGGGTATCTTTATACT
CATCCTGACCAAAGTTTTATGACCAAGCAAATTTCAACGGTAGTAGGTAT
AGAACTGGTTGAGGATGAGGCAATCCGTGACAATATGTCAAGGCTTGACA
TTTTACGTCAAGCAAAAGATGGTGAGTGCGCTAAACATCCTGTCACTAGG
GAACTATGCAACGGTCTTTGGCTTTCTAGTGCATTGGAGGTGCTACGTTT
GAACGATATATCACGCGGTAGGTTTACAGAGCTTGTATTGAACGCCCTGT
GGTATGGCAGAAGCAAAGGCTATAATCTGATGATATGTGGAAAAAGTAAT
TGTGCTAAGTCCTTTATGTTAATGCCgttgattgaaatttttgattgttt
tatgACACCGTCACCCGGAAATTATAACTGGGTGGGTGCTCCTGAGAAAG
AAATTGTTTTCTTGAACgatttaaggtatgaaaaggaTGGGGAACAAAAG
GTAATGGCATGGaatctttttctaaatcttcTCGAAGGTTTCCCTGTCAA
TATGCCAGGCCTAAAAATCGATTTTCAACGGACCTCCTTTGGACAAAAAG
ACAACCCATTTTTGCAACTGCTGAGAAGAAAATTGTTCGAATTGTTAGCG
GAGAATTTGATGAGGGAGAAACCAACCAAATGGACATGCGGTGGAATATT
TTAAACTTCAAGCATGTATTTGACCGGGATGCTGCCAATTATAACATTAC
TCCTTGTGGGGCTTGTTTTGCTAAACTCTTGCTTGACGCATAATTCACTT
CTATTGCTTGACCCATAATTAATTTTGCATATTATcgtgtttttataatt
ttacaaAACTAttgcgtttttttataatttcccTAAACAGTCGTGTCTTT
TATAATTTTCACAAAACTATGGCGTTTTCTTATAGTTTCCTGAAAGGGTC
GTGTCTTTTATAATTTTCCTAAAGTTCCGCGTTTTCTTATAATTTCCCTA
AACAGTCGTgtcttttataatttttcaaaacttcagcgttttcttataat
tt

Run BLAST on NCBI

transcript from alignment at sc0001335:45395..50940-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035584 ID=TCONS_00035584|Name=TCONS_00035584|organism=Clytia hemisphaerica|type=transcript|length=5546bp|location=Sequence derived from alignment at sc0001335:45395..50940- (Clytia hemisphaerica)
AAAATATATGGGACTTTTTTGAAATCCACACTATTCTTTAGAAAAACCCT
TCTCCCCAGTCTACAAAGCTGGTCCTGTGCAGAGGCAAAACAACCACCAC
AGCTTTGTAAACAGGGGGGAGGATTTTCACTTGTTTTGAGCTCAACTAGA
TAGAAAAAGTCTCATTATATTATGCACAAGATTGTCTGAATTTTTAAAAA
AAAATTTGAAAGAGCTTTCCCCACCACATGCGAAAATTTTCTTTTTTAAA
TGGCTATCATGGCTTCTTCCCGCCAGAAAAAAGCCGTGTGCTTGCATAGC
AACAAAATTAGAGTCCCTAGCAACAAGATGGCAGACTAAAAATGGCGGGA
AAAAATGTAAACAAAGGGTAATCTGATCCTTTCTCAGGGGGGAGTGGCAA
TTTTACAACCCTTTCACACATTTAAAAAGTAAGCAAAGAGTAATCTGATC
TTTTCTGAAGAGGTAGTGCCAATTTTACAAACCTTTTACANGTAATCTGA
TCCTTTCTCAGGGGGGAGTGGCAATTTTACAACCCTTTCACACATTTAAA
AAGTAAGCAAAGAGTAATCTGATCTTTTCTGAAGAGGTAGTGCCAATTTT
ACAATCCTTTTACAAATAAAACAATTTCAATAAATTTCTCTGTATTTGTA
ACTAAAAATTACAAATGGATGACACAAGTGATTTATCGCAATGCGTGGTC
AACTTAAACGCCTCTACCCCTGTACCGAACCGACACCTTGAATCGTATGA
TGCTGCCCTTGGACGAGACAGTGATTCCCAGGTTTCCACAACATCAGCGC
AAGGTCTAGACACTACAATCAGGGACAAAATATTTGGCACAAAAAGGAAA
TTCACCGGGGTGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTA
GGTCCGAAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
TTTTAGGGGCTAAAACTTGAAAAAAAGTCAAAATTTTCTGAAATTTTCAC
GTTTTTGACTTTTCGTAAATTGGACCTTTTCAAAAAGTTAAATATTTCAC
AAGAAATTGATTTTGACCTAATGAAAATGCCTCAAAATGGTCGGAAAAGG
GCTATTTTTCACATTTTTGGCGTTTTCTCCTAATTTTAGACCCCCAGCAG
AGCAGAAATCGGCATTTTTTATTTTCAAAGACAATCAGGGACAAAATATT
TGGCACAAAAAGGAAATTCACCGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGTAATCTGATCTTTTCTGAAGAGGTAGTG
CCAATTTTACAAACCTTTTACAAATAAAAAAATTTCAATAAATTGCTCTG
TATTTGTAACTAAAAATTACAAATGGATGACACAAGTGATTTATCGCAAT
GCGTGGTCAACTTAAACGCCTCTACCCCTGTACCAAACCGAGACCTTGAA
TCGTATGATGCTGCCCTTGGACGAGACAGTGATTCCCAGGTTTCCACAAC
ATCAGCACAAGGTCTAGACACTAGCGCCACTGCAAGAAGTTCCCGTTCCA
AGAAACCAAACAAAACAAAAGGCAAAGGTGAAAATAGCAATAAAAACAAA
AAGAAAAACCCACGTGAAGCATACTTGATTACGTACTCTCAGGCTGATGT
TGTGAAAGTCCCGGGACGCGAGCACTTTGCCAATATGGTGGTCCAAGAAT
TTGACAGAAATGATTCTGTTTCAGAGAAGTGGGTTGTATCAGCAGAATTG
CACCGAAATCATGGCATTCACTACCACCTCGCTTTGAAATTAAAGAAACC
ACGACGGTTTAAGGAAGTTCGCAATGCAATCAAAAATAAATATGACATTG
ATCTTGACTTTCAAGAATGGCATAGTAATTATCATGATGCCTTTTCATAT
GTTGTTAAGTTTGATTCCCACTATGTAACAAGTCCTAGACACGTTATTTT
GTCAAACCCACCCAGAACAACAAAGGCAACAGAGGCTAAGCGTGCCCAAG
CTCAACATAGTAGTGAAGCACCTCCAAAGCGCAAGAAGAGTAATTTGCCA
CCCAAGTTAGGCCGGGAAGATGTGGGAAATATCATCCGAGAAAATGGTAT
CAAGTCGGTTAAAGAACTGTTCTCTCTAGCCCATGCCCAAGCAAAGGAGG
GTAAAACTGATTTGAGAGGGTATCTTTATACTCATCCTGACCAAAGTTTT
ATGACCAAGCAAATTTCAACGGTAGTAGGTATAGAACTGGTTGAGGATGA
GGCAATCCGTGACAATATGTCAAGGCTTGACATTTTACGTCAAGCAAAAG
ATGGTGAGTGCGCTAAACATCCTGTCACTAGGGAACTATGCAACGGTCTT
TGGCTTTCTAGTGCATTGGAGGTGCTACGTTTGAACGATATATCACGCGG
TAGGTTTACAGAGCTTGTATTGAACGCCCTGTGNTGCTACGTTTGAATGA
AATATCACGCGGTAGGTTTACAGAGCTTGTATTGAACGCCCTGTGGTATG
GCAGAAGCAAAGGCTATAATCTGATGATATGTGGAAAAAGTAATTGTGCT
AAGTCCTTTATGTTAATGCCGTTGATTGAAATTTTTGATTGTTTTATGAC
ACCGTCACCCGGAAATTATAACTGGGTGGGTGCTCCTGAGAAAGAAATTG
TTTTCTTGAACGATTTAAGGTATGAAAAGGATGGGGAACAAAAGGTAATG
GCATGGAATCTTTTTCTAAATCTTCTCGAAGGTTTCCCTGTCAATATGCC
AGGCCTAAAAATCGATTTTCAACGGACCTCCTTTGGACAAAAAGACAACC
CATTTTTGCAACTGCTGAGAAGAAAATTGTTCGAATTGTTAGCGGAGAAT
TTGATGAGGGAGAAACCAACCAAATGGACATGCGGTGGAATATTTTAAAC
TTCAAGCATGTATTTGACCGGGATGCTGCCAATTATAACATTACTCCTTG
TGGGGCTTGTTTTGCTAAACTCTTGCTTGACGCATAATTCACTTCTATTG
CTTGACCCATAATTAATTTTGCATATTATCGTGTTTTTATAATTTTACAA
AACTATTGCGTTTTTTTATAATTTCCCTAAACAGTCGTGTCTTTTATAAT
TTTCACAAAACTATGGCGTTTTCTTATAGTTTCCTGAAAGGGTCGTGTCT
TTTATAATTTTCCTAAAGTTCCGCGTTTTCTTATAATTTCCCTAAACAGT
CGTGTCTTTTATAATTTTTCAAAACTTCAGCGTTTTCTTATAATTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020834	XLOC_020834	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035584-exon-sc0001335-1575043694:50452..50940	TCONS_00035584-exon-sc0001335-1575043694:50452..50940	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1575043694:46238..47319	TCONS_00035584-exon-sc0001335-1575043694:46238..47319	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1575043694:45395..46175	TCONS_00035584-exon-sc0001335-1575043694:45395..46175	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1510915933:50452..50940	TCONS_00035584-exon-sc0001335-1510915933:50452..50940	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1510915933:46238..47319	TCONS_00035584-exon-sc0001335-1510915933:46238..47319	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1510915933:45395..46175	TCONS_00035584-exon-sc0001335-1510915933:45395..46175	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1491911889:50452..50940	TCONS_00035584-exon-sc0001335-1491911889:50452..50940	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1491911889:46238..47319	TCONS_00035584-exon-sc0001335-1491911889:46238..47319	Clytia hemisphaerica	exon
TCONS_00035584-exon-sc0001335-1491911889:45395..46175	TCONS_00035584-exon-sc0001335-1491911889:45395..46175	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001335	supercontig	sc0001335:45395..50940 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.9083	4.1052	2.24436	2.64667	19.4892	14.1063	8.21191	9.74888	4.19806	5.78444	5.47257	5.26595	2.77342	3.05505	2.29606	2.1125	2.6269	1.76713	1.49537	1.15529	2.43105	1.90956	2.11752	2.83659	10.2197	11.6542	1.11105	0.976652	0.807253	0.72009

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00035584 vs. Swiss-Prot (Human)

BLAST of TCONS_00035584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00035584 (transcript) - C. hemisphaerica