TCONS_00035583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035583
Unique NameTCONS_00035583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035583 ID=TCONS_00035583|Name=TCONS_00035583|organism=Clytia hemisphaerica|type=transcript|length=2476bp
aaaatatatgggacttttttgaaatccaCACTATTCTTTAGAAAAACCCT
TCTCCCCAGTCTACAAAGCTGGTCCTGTGCAGAGGCAAAACAACCACCAC
AGCTTTGTAAACAGGGGGGAGGATTTTCACTTGTTTTGAGCTCAACTAGA
TAGAAAAAGTCTCATTATATTATGCACAagattgtctgaatttttaaaaa
aaaatttgaaagagctTTCCCCACCACAtgcgaaaattttcttttttaaa
tggcTATCATGGCTTCTTCCCGCCAGAAAAAAGCCGTGTGCTTGCATAGC
AACAAAATTAGAGTCCCTAGCAACAAGATGGCAGACTAAAAATGGCggga
aaaaatgtaaacaaagggTAATCTGATCCTTTCTCAGGGGGGAGTGGCAA
TTTTACAACCCTTTCACACATTTAAAAAGTAAGCAAAGAGTAATCTGATC
TTTTCTGAAGAGGTAGTGCCAATTTTACAAACCTTTTACANGTAATCTGA
TCCTTTCTCAGGGGGGAGTGGCAATTTTACAACCCTTTCACACATTTAAA
AAGTAAGCAAAGAGTAATCTGATCTTTTCTGAAGAGGTAGTGCCAATTTT
ACAAAccttttacaaataaaaaaatttcaataaattgcTCTGTATTTGTA
ACTAAAAATTACAAATGGATGACACAAGTGATTTATCGCAATGCGTGGTC
AACTTAAACGCCTCTACCCCTGTACCAAACCGAGACCTTGAATCGTATGA
TGCTGCCCTTGGACGAGACAGTGATTCCCAGGTTTCCACAACATCAGCAC
AAGGTCTAGACACTAGCGCCACTGCAAGAAGTTCCCGTTCCAAGAaacca
aacaaaacaaaaggcaAAGGTGAAAAtagcaataaaaacaaaaagaaaaa
cccaCGTGAAGCATACTTGATTACGTACTCTCAGGCTGATGTTGTGAAAG
TCCCGGGACGCGAGCACTTTGCCAATATGGTGGTCCAAGAATTTGACAGA
AATGATTCTGTTTCAGAGAAGTGGGTTGTATCAGCAGAATTGCACCGAAA
TCATGGCATTCACTACCACCTCGCTTTGAAATTAAAGAAACCACGACGGT
TTAAGGAAGTTCGCAAtgcaatcaaaaataaatatgacaTTGATCTTGAC
TTTCAAGAATGGCATAGTAATTATCATGATGCCTTTTCATATGTTGTTAA
GTTTGATTCCCACTATGTAACAAGTCCTAGACACGTTATTTTGTCAAACC
CACCCAGAACAACAAAGGCAACAGAGGCTAAGCGTGCCCAAGCTCAACAT
AGTAGTGAAGCACCTCCAAAGCGCAAGAAGAGTAATTTGCCACCCAAGTT
AGGCCGGGAAGATGTGGGAAATATCATCCGAGAAAATGGTATCAAGTCGG
TTAAAGAACTGTTCTCTCTAGCCCATGCCCAAGCAAAGGAGGGTAAAACT
GATTTGAGAGGGTATCTTTATACTCATCCTGACCAAAGTTTTATGACCAA
GCAAATTTCAACGGTAGTAGGTATAGAACTGGTTGAGGATGAGGCAATCC
GTGACAATATGTCAAGGCTTGACATTTTACGTCAAGCAAAAGATGGTGAG
TGCGCTAAACATCCTGTCACTAGGGAACTATGCAACGGTCTTTGGCTTTC
TAGTGCATTGGAGGTGCTACGTTTGAACGATATATCACGCGGTAGGTTTA
CAGAGCTTGTATTGAACGCCCTGTGGTATGGCAGAAGCAAAGGCTATAAT
CTGATGATATGTGGAAAAAGTAATTGTGCTAAGTCCTTTATGTTAATGCC
gttgattgaaatttttgattgttttatgACACCGTCACCCGGAAATTATA
ACTGGGTGGGTGCTCCTGAGAAAGAAATTGTTTTCTTGAACgatttaagg
tatgaaaaggaTGGGGAACAAAAGGTAATGGCATGGaatctttttctaaa
tcttcTCGAAGGTTTCCCTGTCAATATGCCAGGCCTAAAAATCGATTTTC
AACGGACCTCCTTTGGACAAAAAGACAACCCATTTTTGCAACTGCTGAGA
AGAAAATTGTTCGAATTGTTAGCGGAGAATTTGATGAGGGAGAAACCAAC
CAAATGGACATGCGGTGGAATATTTTAAACTTCAAGCATGTATTTGACCG
GGATGCTGCCAATTATAACATTACTCCTTGTGGGGCTTGTTTTGCTAAAC
TCTTGCTTGACGCATAATTCACTTCTATTGCTTGACCCATAATTAATTTT
GCATATTATcgtgtttttataattttacaaAACTAttgcgtttttttata
atttcccTAAACAGTCGTGTCTTTTATAATTTTCACAAAACTATGGCGTT
TTCTTATAGTTTCCTGAAAGGGTCGTGTCTTTTATAATTTTCCTAAAGTT
CCGCGTTTTCTTATAATTTCCCTAAACAGTCGTgtcttttataatttttc
aaaacttcagcgttttcttataattt
Run BLAST on NCBI

transcript from alignment at sc0001335:45395..50940-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035583 ID=TCONS_00035583|Name=TCONS_00035583|organism=Clytia hemisphaerica|type=transcript|length=5546bp|location=Sequence derived from alignment at sc0001335:45395..50940- (Clytia hemisphaerica)
AAAATATATGGGACTTTTTTGAAATCCACACTATTCTTTAGAAAAACCCT
TCTCCCCAGTCTACAAAGCTGGTCCTGTGCAGAGGCAAAACAACCACCAC
AGCTTTGTAAACAGGGGGGAGGATTTTCACTTGTTTTGAGCTCAACTAGA
TAGAAAAAGTCTCATTATATTATGCACAAGATTGTCTGAATTTTTAAAAA
AAAATTTGAAAGAGCTTTCCCCACCACATGCGAAAATTTTCTTTTTTAAA
TGGCTATCATGGCTTCTTCCCGCCAGAAAAAAGCCGTGTGCTTGCATAGC
AACAAAATTAGAGTCCCTAGCAACAAGATGGCAGACTAAAAATGGCGGGA
AAAAATGTAAACAAAGGGTAATCTGATCCTTTCTCAGGGGGGAGTGGCAA
TTTTACAACCCTTTCACACATTTAAAAAGTAAGCAAAGAGTAATCTGATC
TTTTCTGAAGAGGTAGTGCCAATTTTACAAACCTTTTACANGTAATCTGA
TCCTTTCTCAGGGGGGAGTGGCAATTTTACAACCCTTTCACACATTTAAA
AAGTAAGCAAAGAGTAATCTGATCTTTTCTGAAGAGGTAGTGCCAATTTT
ACAATCCTTTTACAAATAAAACAATTTCAATAAATTTCTCTGTATTTGTA
ACTAAAAATTACAAATGGATGACACAAGTGATTTATCGCAATGCGTGGTC
AACTTAAACGCCTCTACCCCTGTACCGAACCGACACCTTGAATCGTATGA
TGCTGCCCTTGGACGAGACAGTGATTCCCAGGTTTCCACAACATCAGCGC
AAGGTCTAGACACTACAATCAGGGACAAAATATTTGGCACAAAAAGGAAA
TTCACCGGGGTGTTTTGAAACCACAATCGATTTGTAAGTGCTCTAAAGTA
GGTCCGAAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
TTTTAGGGGCTAAAACTTGAAAAAAAGTCAAAATTTTCTGAAATTTTCAC
GTTTTTGACTTTTCGTAAATTGGACCTTTTCAAAAAGTTAAATATTTCAC
AAGAAATTGATTTTGACCTAATGAAAATGCCTCAAAATGGTCGGAAAAGG
GCTATTTTTCACATTTTTGGCGTTTTCTCCTAATTTTAGACCCCCAGCAG
AGCAGAAATCGGCATTTTTTATTTTCAAAGACAATCAGGGACAAAATATT
TGGCACAAAAAGGAAATTCACCGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGTAATCTGATCTTTTCTGAAGAGGTAGTG
CCAATTTTACAAACCTTTTACAAATAAAAAAATTTCAATAAATTGCTCTG
TATTTGTAACTAAAAATTACAAATGGATGACACAAGTGATTTATCGCAAT
GCGTGGTCAACTTAAACGCCTCTACCCCTGTACCAAACCGAGACCTTGAA
TCGTATGATGCTGCCCTTGGACGAGACAGTGATTCCCAGGTTTCCACAAC
ATCAGCACAAGGTCTAGACACTAGCGCCACTGCAAGAAGTTCCCGTTCCA
AGAAACCAAACAAAACAAAAGGCAAAGGTGAAAATAGCAATAAAAACAAA
AAGAAAAACCCACGTGAAGCATACTTGATTACGTACTCTCAGGCTGATGT
TGTGAAAGTCCCGGGACGCGAGCACTTTGCCAATATGGTGGTCCAAGAAT
TTGACAGAAATGATTCTGTTTCAGAGAAGTGGGTTGTATCAGCAGAATTG
CACCGAAATCATGGCATTCACTACCACCTCGCTTTGAAATTAAAGAAACC
ACGACGGTTTAAGGAAGTTCGCAATGCAATCAAAAATAAATATGACATTG
ATCTTGACTTTCAAGAATGGCATAGTAATTATCATGATGCCTTTTCATAT
GTTGTTAAGTTTGATTCCCACTATGTAACAAGTCCTAGACACGTTATTTT
GTCAAACCCACCCAGAACAACAAAGGCAACAGAGGCTAAGCGTGCCCAAG
CTCAACATAGTAGTGAAGCACCTCCAAAGCGCAAGAAGAGTAATTTGCCA
CCCAAGTTAGGCCGGGAAGATGTGGGAAATATCATCCGAGAAAATGGTAT
CAAGTCGGTTAAAGAACTGTTCTCTCTAGCCCATGCCCAAGCAAAGGAGG
GTAAAACTGATTTGAGAGGGTATCTTTATACTCATCCTGACCAAAGTTTT
ATGACCAAGCAAATTTCAACGGTAGTAGGTATAGAACTGGTTGAGGATGA
GGCAATCCGTGACAATATGTCAAGGCTTGACATTTTACGTCAAGCAAAAG
ATGGTGAGTGCGCTAAACATCCTGTCACTAGGGAACTATGCAACGGTCTT
TGGCTTTCTAGTGCATTGGAGGTGCTACGTTTGAACGATATATCACGCGG
TAGGTTTACAGAGCTTGTATTGAACGCCCTGTGNTGCTACGTTTGAATGA
AATATCACGCGGTAGGTTTACAGAGCTTGTATTGAACGCCCTGTGGTATG
GCAGAAGCAAAGGCTATAATCTGATGATATGTGGAAAAAGTAATTGTGCT
AAGTCCTTTATGTTAATGCCGTTGATTGAAATTTTTGATTGTTTTATGAC
ACCGTCACCCGGAAATTATAACTGGGTGGGTGCTCCTGAGAAAGAAATTG
TTTTCTTGAACGATTTAAGGTATGAAAAGGATGGGGAACAAAAGGTAATG
GCATGGAATCTTTTTCTAAATCTTCTCGAAGGTTTCCCTGTCAATATGCC
AGGCCTAAAAATCGATTTTCAACGGACCTCCTTTGGACAAAAAGACAACC
CATTTTTGCAACTGCTGAGAAGAAAATTGTTCGAATTGTTAGCGGAGAAT
TTGATGAGGGAGAAACCAACCAAATGGACATGCGGTGGAATATTTTAAAC
TTCAAGCATGTATTTGACCGGGATGCTGCCAATTATAACATTACTCCTTG
TGGGGCTTGTTTTGCTAAACTCTTGCTTGACGCATAATTCACTTCTATTG
CTTGACCCATAATTAATTTTGCATATTATCGTGTTTTTATAATTTTACAA
AACTATTGCGTTTTTTTATAATTTCCCTAAACAGTCGTGTCTTTTATAAT
TTTCACAAAACTATGGCGTTTTCTTATAGTTTCCTGAAAGGGTCGTGTCT
TTTATAATTTTCCTAAAGTTCCGCGTTTTCTTATAATTTCCCTAAACAGT
CGTGTCTTTTATAATTTTTCAAAACTTCAGCGTTTTCTTATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020834XLOC_020834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035583-exon-sc0001335-1575043694:50355..50940TCONS_00035583-exon-sc0001335-1575043694:50355..50940Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1575043694:46238..47346TCONS_00035583-exon-sc0001335-1575043694:46238..47346Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1575043694:45395..46175TCONS_00035583-exon-sc0001335-1575043694:45395..46175Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1510915933:50355..50940TCONS_00035583-exon-sc0001335-1510915933:50355..50940Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1510915933:46238..47346TCONS_00035583-exon-sc0001335-1510915933:46238..47346Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1510915933:45395..46175TCONS_00035583-exon-sc0001335-1510915933:45395..46175Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1491911889:50355..50940TCONS_00035583-exon-sc0001335-1491911889:50355..50940Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1491911889:46238..47346TCONS_00035583-exon-sc0001335-1491911889:46238..47346Clytia hemisphaericaexon
TCONS_00035583-exon-sc0001335-1491911889:45395..46175TCONS_00035583-exon-sc0001335-1491911889:45395..46175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001335supercontigsc0001335:45395..50940 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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