TCONS_00035577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035577
Unique NameTCONS_00035577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035577 ID=TCONS_00035577|Name=TCONS_00035577|organism=Clytia hemisphaerica|type=transcript|length=488bp
CAGTCTTTCCGTTGGTGTCCGGCTTGGTGACATATGAAGCACGTCTTGTT
TTCTAGGTCTTTCTTCTGTTCTGTGGTTGGGGTGAAGGGTTTACGGTTTG
GGTTTCCACCTGGCTTTGCCGAGTATCCTTGTCGCACCATAGTTTGACAG
ATAGCGTCCGCTATGCCAGAGTAGTCTGTTTGGTTCTGTATGTGTGGAGA
TTGGATTTGGTCCATGAGAGCTATCTGCTCTTCCCCTTTGAATTTCATGA
CGTGGTTCTGATCGTCCCATGTAAAGTAACGTTTGAAGTTGCATTCTCCG
ATGTTATGGTTTCCACGGTAGCAAATAGCGCAGTATTTGCTGAATCCTTG
GTTGATTGCGTCTTTCTTGCTTTTGCATTGGGAGTGTTCGTTGGGTTTTC
CTCCCATCTTAGCAATTTGTTCCAGGGATTTTGTTGTTCCATTTGATGat
gttgttctttgttgttgtcTGTTGTTGTTGGTTCGGTG
Run BLAST on NCBI

protein sequence of TCONS_00035577-protein

>TCONS_00035577-protein ID=TCONS_00035577-protein|Name=TCONS_00035577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
HRTNNNRQQQRTTSSNGTTKSLEQIAKMGGKPNEHSQCKSKKDAINQGFS
KYCAICYRGNHNIGECNFKRYFTWDDQNHVMKFKGEEQIALMDQIQSPHI
QNQTDYSGIADAICQTMVRQGYSAKPGGNPNRKPFTPTTEQKKDLENKTC
FICHQAGHQRKD
Run BLAST on NCBI

transcript from alignment at sc0001334:59539..60026

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035577 ID=TCONS_00035577|Name=TCONS_00035577|organism=Clytia hemisphaerica|type=transcript|length=488bp|location=Sequence derived from alignment at sc0001334:59539..60026 (Clytia hemisphaerica)
CACCGAACCAACAACAACAgacaacaacaaagaacaacatCATCAAATGG
AACAACAAAATCCCTGGAACAAATTGCTAAGATGGGAGGAAAACCCAACG
AACACTCCCAATGCAAAAGCAAGAAAGACGCAATCAACCAAGGATTCAGC
AAATACTGCGCTATTTGCTACCGTGGAAACCATAACATCGGAGAATGCAA
CTTCAAACGTTACTTTACATGGGACGATCAGAACCACGTCATGAAATTCA
AAGGGGAAGAGCAGATAGCTCTCATGGACCAAATCCAATCTCCACACATA
CAGAACCAAACAGACTACTCTGGCATAGCGGACGCTATCTGTCAAACTAT
GGTGCGACAAGGATACTCGGCAAAGCCAGGTGGAAACCCAAACCGTAAAC
CCTTCACCCCAACCACAGAACAGAAGAAAGACCTAGAAAACAAGACGTGC
TTCATATGTCACCAAGCCGGACACCAACGGAAAGACTG

Coding sequence (CDS) from alignment at sc0001334:59539..60026

>TCONS_00035577 ID=TCONS_00035577|Name=TCONS_00035577|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0001334:59539..60026 (Clytia hemisphaerica)
CACCGAACCAACAACAACAgacaacaacaaagaacaacatCATCAAATGG
AACAACAAAATCCCTGGAACAAATTGCTAAGATGGGAGGAAAACCCAACG
AACACTCCCAATGCAAAAGCAAGAAAGACGCAATCAACCAAGGATTCAGC
AAATACTGCGCTATTTGCTACCGTGGAAACCATAACATCGGAGAATGCAA
CTTCAAACGTTACTTTACATGGGACGATCAGAACCACGTCATGAAATTCA
AAGGGGAAGAGCAGATAGCTCTCATGGACCAAATCCAATCTCCACACATA
CAGAACCAAACAGACTACTCTGGCATAGCGGACGCTATCTGTCAAACTAT
GGTGCGACAAGGATACTCGGCAAAGCCAGGTGGAAACCCAAACCGTAAAC
CCTTCACCCCAACCACAGAACAGAAGAAAGACCTAGAAAACAAGACGTGC
TTCATATGTCACCAAGCCGGACACCAACGGAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020829XLOC_020829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035577-exon-sc0001334-1491911889:59539..60026TCONS_00035577-exon-sc0001334-1491911889:59539..60026Clytia hemisphaericaexon
TCONS_00035577-exon-sc0001334-1510915933:59539..60026TCONS_00035577-exon-sc0001334-1510915933:59539..60026Clytia hemisphaericaexon
TCONS_00035577-exon-sc0001334-1575043694:59539..60026TCONS_00035577-exon-sc0001334-1575043694:59539..60026Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035577-proteinTCONS_00035577-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001334supercontigsc0001334:59539..60026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12716	0.620007	0	0	0.685931	0.406524	0.653939	0.61221	0.107156	0.663648	0.515322	0.169376	0.930274	0.175654	1.66073	2.5571	1.24096	1.46763	0.135174	0.42435	1.47535	0.89953	0.728998	0.530212	0	0	0.523086	0.558252	1.55252	1.86937
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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