TCONS_00035541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035541
Unique NameTCONS_00035541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035541 ID=TCONS_00035541|Name=TCONS_00035541|organism=Clytia hemisphaerica|type=transcript|length=1821bp
AAAAAAATCAACTAACCTTCCATCATACAATCTAGCCTTTTCTCAAACTG
TTTTCATGTTGttcgtaaaaaaaaaacacgcatgattgaattcatttgga
ttTTTATGACTTTGGAGCGTGCATATAATTAAATTGTTATCGAGATCTTT
TTGCTTGTAACTACCgcaacttggtctaatgttgacacccctcctcttat
ttcgacaccctttttatcagctgaaattgatagaaaggttgaaactgttt
ttctttgcttagatGTCAGAGAGGAAtgatcctttttcaatcagtgattc
aagctttcctattattcctatctctaaagcaGAGTgtttagaccaactta
cggtacaaaTATCACAAGATTTCAAATCGGTCTCTCTGAAAACAGGGCAA
TGGGCACTTAGGATAACCAAAGGGTGATAGGTTATAGTTATGGTTAAGAT
ATGTATATTGAAAAGTCAAAACTGAGAATTAAATTCATCAAACACTTtgt
gtgaaaatttttcttctttattttcagggAAAACCTTATACTCTCAAATC
TCATGCGAAGCCTTGTCATTGCATCTGGTATGAATGCCTCAATAAAAATG
ACAGAAGAGCTGTTGGCTTATGTTGGGGAACTTTTGAGTCATGCTCACAA
TATGGAAAATTGGCCACCATCTTATGTCACTGCTACTTCTCTTCTTAAAA
GTAGGGGCGTTTACATTGATCCTGTTCACCATAAAGTCTGCTTTAGCGTC
GATCACCCCCTTCACCACTATGTTGTTGGTATTGATGAGCAATGCCCACA
TTGTGATGTGACACCCTCAGTTGATAGATATTATCTTCCTATTAAGGATA
AAATAAATCGTTGGTTTCTATCGGATGACATGGCAGAAAAAATGTTAGCT
CATTGGAGAGATAGAGATGTGTGGTTAGGAAAATCAGGAGTTAGCTATCC
AGTAAATGAGATTTGGCACGGTTCCAGATTCAAAGAATTGCAGTGGTTCT
GGGACACTGATTGTAGATGGCCACTTCCACACATTTGTACCAATTGCCAC
AGTTATATCAATCTTAATGGAAATCAAAGTGAAACAATTGATGTAACTTG
TTATCATTGTTACAAAGAAGAGACAATACAACCAAAGTTTGTACATGGAG
ATCCTCGAAACATTGCTTTGATTGGCCATTGGGATGGGTGGAGTCCAAAA
TCTGGAAGAGGCTCTGGTTCCATTGAGATATCAATTGCCACAATGGAGAA
GCTTCATCGTTCAAAGAATGACCACATTTACACCACAACCTTTGTGCCAG
AGCATGCTTTGCCCAATAAAGAACCAAATGCTTTAGATCCATTTTTGGAA
CCACTCATTACAGAGTTGGAAGAACTTTTTATTGATGGACTGGAAGTTAA
ATATCCAATAGATGTTGGTAACCTGAAGGCTGGAAATTGCACAATCAGAT
GTTTGTTAATTTGTTGGACAGGTGACTATCCAGCGCAGTGTCAAATTGGC
AAGTTTTCTTGCAGGGGGACATATGGTTGCCGTGTAGATAAGTGTAAAGG
TGAATCTGTCAATGGTAGTTGTTAGCTTCTCTATATGTTGTTCACGATTT
ACCGATGGGGTaattattttccaaaacttgctgacgtcatcataaaatgA
CCCAATTTTCAAAGATATATTTTTAAGTCCTCACTGGTGGTACAATTACT
TGCTTTATTTAGCAGATTCAACCACTGAAGtacaagcccgaagggctaga
atcgaatctctatGGTGGGATTTGAAGCCTTCCCATCccaccaaagttgc
gcggccttgagcgacccacCT
Run BLAST on NCBI

transcript from alignment at sc0001328:5987..9027+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035541 ID=TCONS_00035541|Name=TCONS_00035541|organism=Clytia hemisphaerica|type=transcript|length=3041bp|location=Sequence derived from alignment at sc0001328:5987..9027+ (Clytia hemisphaerica)
AAAAAAATCAACTAACCTTCCATCATACAATCTAGCCTTTTCTCAAACTG
TTTTCATGTTGttcgtaaaaaaaaaacacgcatgattgaattcatttgga
ttTTTATGACTTTGGAGCGTGCATATAATTAAATTGTTATCGAGATCTTT
TTGCTTGTAACTACCgcaacttggtctaatgttgacacccctcctcttat
ttcgacaccctttttatcagctgaaattgatagaaaggttgaaactgttt
ttctttgcttagatGTCAGAGAGGAAtgatcctttttcaatcagtgattc
aagctttcctattattcctatctctaaagcaGAGTgtttagaccaactta
cggtacaaaTATCACAAGATTTCAAATCGGTCTCTCTGAAAACAGGGCAA
TGGGCACTTAGGATAACCAAAGGGTGATAGGTTATAGTTATGGTTAAGAT
ATGTATATTGAAAAGTCAAAACTGAGAATTAAATTCATCAAACACTTtgt
gtgaaaatttttcttctttattttcagggAAAACCTTATACTCTCAAATC
TCATGCGAAGCCTTGTCATTGCATCTGGTATGAATGCCTCAATAAAAATG
ACAGAAGAGCTGTTGGCTTATGTTGGGGAACTTTTGAGTCATGCTCACAA
TATGGAAAATTGGCCACCATCTTATGTCACTGCTACTTCTCTTCTTAAAA
GTAGGGGCGTTTACATTGATCCTGTTCACCATAAAGTCTGCTTTAGCGTC
GATCACCCCCTTCACCACTATGTTGTTGGTATTGATGAGCAATGCCCACA
TTGTGATGTGACACCCTCAGTTGATAGATATTATCTTCCTATTAAGGATA
AAATAAATCGTTGGTTTCTATCGGATGACATGGCAGAAAAAATGTTAGCT
CATTGGAGAGATAGAGATGTGTGGTTAGGAAAATCAGGAGTTAGCTATCC
AGTAAATGAGATTTGGCACGGTTCCAGATTCAAAGAATTGCAGTGGTTCT
GGGACACTGATTGTAGATGGCCACTTCCACACATTTGTACCAATTGCCAC
AGTTATATCAATCTTAATGGAAATCAAAGTGAAACAATTGATGTAACTTG
TTATCATTGTTACAAAGAAGAGACAATACAACCAAAGTTTGTACATGGAG
ATCCTCGAAACATTGCTTTGATTGGCCATTGGGATGGGTGGAGTCCAAAA
TCTGGAAGAGGCTCTGGTAggttttagttatttttttgtccatttacTTT
AGGTGCCTAATAAGCATAGGGGTTCAAATAAACAGTCGGATAATGATTGT
GGGGACACATGCATTGGGCACCTGAGACTACTAGACAAGTCAAGTTTCAT
GTTCTACAGATAGTTAATCTAGTTTGAGCCAATAAAAACTATCCATGGAG
AGGAATTCATGAGTAAACCCTTTTTGTGTGTAATGTAATATAATTTTATA
CTAAAAGATACTCATTTGTTATTGTGTGTATTATTGTAATATTAATCACA
TGATGCTAAAATTCTGTATCATCATATAATGTAACATTGGGAataatttt
ctgtaattttccCATAAAACTCTTGTTGATGTTTTTATACACGGGAATTT
TATTGTAATAGGACACCAAAGATTTAAAATAAGTCTTGGAAGATTTGTCA
CAAAATTTGTGACATCGATTTTCTCTAAGCTTGGTAAATGGCACGGCACA
TACAAAGGATTTTATTCAAAAGATCTAATAATTGCTCAAACCTCAAGAGT
TATGTGTGTACAGGGCAATTTCAGGATCTCAATTTCAGGTAATAATTCCC
AGTAAAACCATCAATCAACAAGAGCGCCATGGCTTGGCTATTAGCTAGTC
TTAAAATTATAACTCCCAATTTCTTTACTATTAAGGTTCCATTGAGATAT
CAATTGCCACAATGGAGAAGCTTCATCGTTCAAAGAATGACCACATTTAC
ACCACAACCTTTGTGCCAGAGCATGCTTTGCCCAATAAAGAACCAAATGC
TTTAGATCCATTTTTGGAACCACTCATTACAGAGTTGGAAGAACTTTTTA
TTGATGGTAAGTCTACTTTTGAGGCATATTATAAATTATACTATACTACC
TTTTGCTGTTTTGTTATTGAGATACAGTTCAACTGTAAAATCATTATGAA
AATAACCAGTACCAACATTACTCATTTAGCAGTTTATTATACCTTACCAC
CCAGCTCAGGAGAAAATATTATCTTACCCAAAGTATAATTGGACactaaa
gatatttaaaaacttTCGTTCTCACATGTCACCAACTGATTATACTCACC
TACTTCACTCACCTACTTCACTCAcctaaattttcttataaatctCACAT
TTAGGACTGGAAGTTAAATATCCAATAGATGTTGGTAACCTGAAGGCTGG
AAATTGCACAATCAGATGTTTGTTAATTTGTTGGACAGGTGACTATCCAG
CGCAGTGTCAAATTGGCAAGTTTTCTTGCAGGGGGACATATGGTTGCCGT
GTAGATAAGTGTAAAGGTTTGAAAGCTTTCAGCTCATTTTATTTTGTGAA
TATCTCAGTTTGTTCATTCAAGTGCCAGAAATTGCCATGAATTTGAAAGT
ATAACCAgcatcaaaatcatcattttagaCAATTTAAATTTGACTATTAT
AACAGGGATataatgtatttttaatttaGAACTTTGCACTTTGAATCTAG
GATACTTGAATCTCCTTAAACCTTTTTTACAATTCATGTTTAATCAACCT
ATGAAATTCTTTATTTCAGGTGAATCTGTCAATGGTAGTTGTTAGCTTCT
CTATATGTTGTTCACGATTTACCGATGGGGTaattattttccaaaacttg
ctgacgtcatcataaaatgACCCAATTTTCAAAGATATATTTTTAAGTCC
TCACTGGTGGTACAATTACTTGCTTTATTTAGCAGATTCAACCACTGAAG
tacaagcccgaagggctagaatcgaatctctatGGTGGGATTTGAAGCCT
TCCCATCccaccaaagttgcgcggccttgagcgacccacCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020795XLOC_020795Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035541-exon-sc0001328-1491911889:5987..7202TCONS_00035541-exon-sc0001328-1491911889:5987..7202Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1510915933:5987..7202TCONS_00035541-exon-sc0001328-1510915933:5987..7202Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1575043694:5987..7202TCONS_00035541-exon-sc0001328-1575043694:5987..7202Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1491911889:7872..8042TCONS_00035541-exon-sc0001328-1491911889:7872..8042Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1510915933:7872..8042TCONS_00035541-exon-sc0001328-1510915933:7872..8042Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1575043694:7872..8042TCONS_00035541-exon-sc0001328-1575043694:7872..8042Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1491911889:8341..8502TCONS_00035541-exon-sc0001328-1491911889:8341..8502Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1510915933:8341..8502TCONS_00035541-exon-sc0001328-1510915933:8341..8502Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1575043694:8341..8502TCONS_00035541-exon-sc0001328-1575043694:8341..8502Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1491911889:8756..9027TCONS_00035541-exon-sc0001328-1491911889:8756..9027Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1510915933:8756..9027TCONS_00035541-exon-sc0001328-1510915933:8756..9027Clytia hemisphaericaexon
TCONS_00035541-exon-sc0001328-1575043694:8756..9027TCONS_00035541-exon-sc0001328-1575043694:8756..9027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001328supercontigsc0001328:5987..9027 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0688573	0	0	0	0	0	0	0.0280689	0	0	0	0	0.235943	0	0	0	0	0	0	0	0	0	0	0.158922	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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