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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035539 ID=TCONS_00035539|Name=TCONS_00035539|organism=Clytia hemisphaerica|type=transcript|length=2054bp
AAAGAACCAAGCAAAGACAAAGAAGAACAGATAGAAATGGCTGAATGGTG
CTGAATTAAAGATTACAAGATGGAAGGTGAGCAAGAACCACAACCAAAAT
GGGCTAGACTGTCAGTTGCAAACTGTCGGTGTGAGAAATCAACTATTCAA
CCACACACACACTGTCCTTGTCCGTCTTGCAAAGGAAAAGCTGTTCATCG
AAACACAGAAATTGCACATTGCAAACAATATTTAATGCTTGCCAAAATAG
AAGAAGGATCAAATCAAGTAATTGGCAATAATGATTCTGTTCAGGATGAG
TCTAATGCTAATGACAGCAATAATTCAGACGAAAACTCAGCTCTCAACCA
AAACATTTACACACCGAACACTTAATCACACACAATCACTCTACTCAAAT
ACACTGTCACTTCAGCAGCAGGAGGTTTCACCAAGCACATTGACAGGCAT
ATTGCAAGATGACTCGAACAACTGTCAAGGCAGCATGATTATGAATAACA
ATATAGATACTAGTATCGATGTTTCAATGTACCGTCACAATAACCATGTA
GCAGCAGCAGGACCTTCTCATGATGATGGAGATGATGGTGACTTCTCTGT
TCCTCTAAATGAATTGGATCAATCTAATAATGACAGggAAAACCTTATAC
TCTCAAATCTCATGCGAAGCCTTGTCATTGCATCTGGTATGAATGCCTCA
ATAAAAATGACAGAAGAGCTGTTGGCTTATGTTGGGGAACTTTTGAGTCA
TGCTCACAATATGGAAAATTGGCCACCATCTTATGTCACTGCTACTTCTC
TTCTTAAAAGTAGGGGCGTTTACATTGATCCTGTTCACCATAAAGTCTGC
TTTAGCGTCGATCACCCCCTTCACCACTATGTTGTTGGTATTGATGAGCA
ATGCCCACATTGTGATGTGACACCCTCAGTTGATAGATATTATCTTCCTA
TTAAGGATAAAATAAATCGTTGGTTTCTATCGGATGACATGGCAGAAAAA
ATGTTAGCTCATTGGAGAGATAGAGATGTGTGGTTAGGAAAATCAGGAGT
TAGCTATCCAGTAAATGAGATTTGGCACGGTTCCAGATTCAAAGAATTGC
AGTGGTTCTGGGACACTGATTGTAGATGGCCACTTCCACACATTTGTACC
AATTGCCACAGTTATATCAATCTTAATGGAAATCAAAGTGAAACAATTGA
TGTAACTTGTTATCATTGTTACAAAGAAGAGACAATACAACCAAAGTTTG
TACATGGAGATCCTCGAAACATTGCTTTGATTGGCCATTGGGATGGGTGG
AGTCCAAAATCTGGAAGAGGCTCTGGTTCCATTGAGATATCAATTGCCAC
AATGGAGAAGCTTCATCGTTCAAAGAATGACCACATTTACACCACAACCT
TTGTGCCAGAGCATGCTTTGCCCAATAAAGAACCAAATGCTTTAGATCCA
TTTTTGGAACCACTCATTACAGAGTTGGAAGAACTTTTTATTGATGGTAA
GTCTACTTTTGAGGCATATTATAAATTATACTATACTACCTTTTGCTGTT
TTGTTATTGAGATACAGTTCAACTGTAAAATCATTATGAAAATAACCAGT
ACCAACATTACTCATTTAGCAGTTTATTATACCTTACCACCCAGCTCAGG
AGAAAATATTATCTTACCCAAAGTATAATTGGACactaaagatatttaaa
aacttTCGTTCTCACATGTCACCAACTGATTATACTCACCTACTTCACTC
ACCTACTTCACTCAcctaaattttcttataaatctCACATTTAGGACTGG
AAGTTAAATATCCAATAGATGTTGGTAACCTGAAGGCTGGAAATTGCACA
ATCAGATGTTTGTTAATTTGTTGGACAGGTGACTATCCAGCGCAGTGTCA
AATTGGCAAGTTTTCTTGCAGGGGGACATATGGTTGCCGTGTAGATAAGT
GTAAAGGTTTGAAAGCTTTCAGCTCATTTTATTTTGTGAATATCTCAGTT
TGTTCATTCAAGTGCCAGAAATTGCCATGAATTTGAAAGTATAACCAgca
tcaa Run BLAST on NCBI transcript from alignment at sc0001328:4722..8600+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035539 ID=TCONS_00035539|Name=TCONS_00035539|organism=Clytia hemisphaerica|type=transcript|length=3879bp|location=Sequence derived from alignment at sc0001328:4722..8600+ (Clytia hemisphaerica)
AAAGAACCAAGCAAAGACAAAGAAGAACAGATAGAAATGGCTGAATGGTG
CTGAATTAAAGATTACAAGATGGAAGGTGAGCAAGAACCACAACCAAAAT
GGGCTAGACTGTCAGTTGCAAACTGTCGGTGTGAGAAATCAACTATTCAA
CCACACACACACTGTCCTTGTCCGTCTTGCAAAGGAAAAGCTGTTCATCG
AAACACAGAAATTGCACATTGCAAACAATATTTAATGCTTGCCAAAATAG
AAGAAGGATCAAATCAAGTAATTGGCAATAATGATTCTGTTCAGGATGAG
TCTAATGCTAATGACAGCAATAATTCAGACGAAAACTCAGCTCTCAACCA
AAACATTTACACACCGAACACTTAATCACACACAATCACTCTACTCAAAT
ACACTGTCACTTCAGCAGCAGGAGGTTTCACCAAGCACATTGACAGGCAT
ATTGCAAGATGACTCGAACAACTGTCAAGGCAGCATGATTATGAATAACA
ATATAGATACTAGTATCGATGTTTCAATGTACCGTCACAATAACCATGTA
GCAGCAGCAGGACCTTCTCATGATGATGGAGATGATGGTGACTTCTCTGT
TCCTCTAAATGAATTGGATCAATCTAATAATGACAGGTAATTTAAATTTC
ACACCCACATTTTGCATAAAGCTCTTCCAGTTAAGAGTGTTTAAGAGTCC
GGATATACCACAGGAAtatcagtctgggaaatcctctcaattgcatgctt
atgttccgagggcgtaagcccgtaattgcatggttataatttacgcccga
TCCCGCCctggttgaaattgcttagggatttcaaggggttcagaattctc
taattcaggcgaaggcatggtttaacgggcaatccatttttacgaatctt
cttctacgataaattttgagtaaaactgccctaggcttttgaaattcaac
agagctttcggaaggaattacatgtgaaaaatataggaaattttaaagcg
tgcaattacacgcttaccgcaaaagccgtcacccgtcaatcttgcttaac
gcttaccgcccgtttcagaacaatttcgataagcgtgtaattacacgctt
aaaaattctgccattttgataaccgtgcgattgcgcgcttacggcctcgg
aacataagcgtgcaattgagaggatttcccagactgctTGCCGATTTTGG
TACCGTATGTCGTCAGTATAGGTTTTAAATTTAATCCTTCATGTCTTTGT
CATTTATTGAGCAGTAAAAAAATCAACTAACCTTCCATCATACAATCTAG
CCTTTTCTCAAACTGTTTTCATGTTGttcgtaaaaaaaaaacacgcatga
ttgaattcatttggattTTTATGACTTTGGAGCGTGCATATAATTAAATT
GTTATCGAGATCTTTTTGCTTGTAACTACCgcaacttggtctaatgttga
cacccctcctcttatttcgacaccctttttatcagctgaaattgatagaa
aggttgaaactgtttttctttgcttagatGTCAGAGAGGAAtgatccttt
ttcaatcagtgattcaagctttcctattattcctatctctaaagcaGAGT
gtttagaccaacttacggtacaaaTATCACAAGATTTCAAATCGGTCTCT
CTGAAAACAGGGCAATGGGCACTTAGGATAACCAAAGGGTGATAGGTTAT
AGTTATGGTTAAGATATGTATATTGAAAAGTCAAAACTGAGAATTAAATT
CATCAAACACTTtgtgtgaaaatttttcttctttattttcagggAAAACC
TTATACTCTCAAATCTCATGCGAAGCCTTGTCATTGCATCTGGTATGAAT
GCCTCAATAAAAATGACAGAAGAGCTGTTGGCTTATGTTGGGGAACTTTT
GAGTCATGCTCACAATATGGAAAATTGGCCACCATCTTATGTCACTGCTA
CTTCTCTTCTTAAAAGTAGGGGCGTTTACATTGATCCTGTTCACCATAAA
GTCTGCTTTAGCGTCGATCACCCCCTTCACCACTATGTTGTTGGTATTGA
TGAGCAATGCCCACATTGTGATGTGACACCCTCAGTTGATAGATATTATC
TTCCTATTAAGGATAAAATAAATCGTTGGTTTCTATCGGATGACATGGCA
GAAAAAATGTTAGCTCATTGGAGAGATAGAGATGTGTGGTTAGGAAAATC
AGGAGTTAGCTATCCAGTAAATGAGATTTGGCACGGTTCCAGATTCAAAG
AATTGCAGTGGTTCTGGGACACTGATTGTAGATGGCCACTTCCACACATT
TGTACCAATTGCCACAGTTATATCAATCTTAATGGAAATCAAAGTGAAAC
AATTGATGTAACTTGTTATCATTGTTACAAAGAAGAGACAATACAACCAA
AGTTTGTACATGGAGATCCTCGAAACATTGCTTTGATTGGCCATTGGGAT
GGGTGGAGTCCAAAATCTGGAAGAGGCTCTGGTAggttttagttattttt
ttgtccatttacTTTAGGTGCCTAATAAGCATAGGGGTTCAAATAAACAG
TCGGATAATGATTGTGGGGACACATGCATTGGGCACCTGAGACTACTAGA
CAAGTCAAGTTTCATGTTCTACAGATAGTTAATCTAGTTTGAGCCAATAA
AAACTATCCATGGAGAGGAATTCATGAGTAAACCCTTTTTGTGTGTAATG
TAATATAATTTTATACTAAAAGATACTCATTTGTTATTGTGTGTATTATT
GTAATATTAATCACATGATGCTAAAATTCTGTATCATCATATAATGTAAC
ATTGGGAataattttctgtaattttccCATAAAACTCTTGTTGATGTTTT
TATACACGGGAATTTTATTGTAATAGGACACCAAAGATTTAAAATAAGTC
TTGGAAGATTTGTCACAAAATTTGTGACATCGATTTTCTCTAAGCTTGGT
AAATGGCACGGCACATACAAAGGATTTTATTCAAAAGATCTAATAATTGC
TCAAACCTCAAGAGTTATGTGTGTACAGGGCAATTTCAGGATCTCAATTT
CAGGTAATAATTCCCAGTAAAACCATCAATCAACAAGAGCGCCATGGCTT
GGCTATTAGCTAGTCTTAAAATTATAACTCCCAATTTCTTTACTATTAAG
GTTCCATTGAGATATCAATTGCCACAATGGAGAAGCTTCATCGTTCAAAG
AATGACCACATTTACACCACAACCTTTGTGCCAGAGCATGCTTTGCCCAA
TAAAGAACCAAATGCTTTAGATCCATTTTTGGAACCACTCATTACAGAGT
TGGAAGAACTTTTTATTGATGGTAAGTCTACTTTTGAGGCATATTATAAA
TTATACTATACTACCTTTTGCTGTTTTGTTATTGAGATACAGTTCAACTG
TAAAATCATTATGAAAATAACCAGTACCAACATTACTCATTTAGCAGTTT
ATTATACCTTACCACCCAGCTCAGGAGAAAATATTATCTTACCCAAAGTA
TAATTGGACactaaagatatttaaaaacttTCGTTCTCACATGTCACCAA
CTGATTATACTCACCTACTTCACTCACCTACTTCACTCAcctaaattttc
ttataaatctCACATTTAGGACTGGAAGTTAAATATCCAATAGATGTTGG
TAACCTGAAGGCTGGAAATTGCACAATCAGATGTTTGTTAATTTGTTGGA
CAGGTGACTATCCAGCGCAGTGTCAAATTGGCAAGTTTTCTTGCAGGGGG
ACATATGGTTGCCGTGTAGATAAGTGTAAAGGTTTGAAAGCTTTCAGCTC
ATTTTATTTTGTGAATATCTCAGTTTGTTCATTCAAGTGCCAGAAATTGC
CATGAATTTGAAAGTATAACCAgcatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035539-exon-sc0001328-1491911889:4722..5357 | TCONS_00035539-exon-sc0001328-1491911889:4722..5357 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1510915933:4722..5357 | TCONS_00035539-exon-sc0001328-1510915933:4722..5357 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1575043694:4722..5357 | TCONS_00035539-exon-sc0001328-1575043694:4722..5357 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1491911889:6514..7202 | TCONS_00035539-exon-sc0001328-1491911889:6514..7202 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1510915933:6514..7202 | TCONS_00035539-exon-sc0001328-1510915933:6514..7202 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1575043694:6514..7202 | TCONS_00035539-exon-sc0001328-1575043694:6514..7202 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1491911889:7872..8600 | TCONS_00035539-exon-sc0001328-1491911889:7872..8600 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1510915933:7872..8600 | TCONS_00035539-exon-sc0001328-1510915933:7872..8600 | Clytia hemisphaerica | exon |
| TCONS_00035539-exon-sc0001328-1575043694:7872..8600 | TCONS_00035539-exon-sc0001328-1575043694:7872..8600 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001328 | supercontig | sc0001328:4722..8600 + |
Blast
The following BLAST results are available for this feature:
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