|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035506 ID=TCONS_00035506|Name=TCONS_00035506|organism=Clytia hemisphaerica|type=transcript|length=884bp
CACAATTTCCTCTAGTCTTGTCTTATGCCTGTACAAGTCATAAAGTCCAA
GGATTAACACTACAATCTGCAGTAGTAAGCTTTGAATTATTTGCTCAAAA
AGCTTTCAATGAAGGCCAAATGTATGTAAATTTATCCAGAGTGACAAATA
TAAATGGGTTATTTCTGATTGGTGAATACAATAGAAAGCATATCCGTGTT
AACAATGAAGCAGGCATTGAATATGAACGATTAAGGAGAGAAAGTTcttt
gcaaaaagttgaaactttttcacCTGCTTTGACTTCCAGTAAACATTTGC
ACATTTCACTTTTAAATGTCAGATCTTTCAAAAAACATGTCATTGACATG
GTTCATTCAGATAATTTGATCAGCAGTGACTTGATATGCCTTACTGAAAC
TCAACATCACCTTCAAGTGAAACAAATGACATTGATGAATCcttgcaaag
tttcaaaattgattaCAATAATAATTCAGTCAATAGATTTCAAAACACTG
CATGTTGTGCAAATtcttcaatagaaattttagaaTGCCAAAAAGCAGCT
GGTTATACACAGATAATGTTTAAAAAAGAGACATTTAGTGAGCAACCTAT
TACACTTCTACTCTTGTACAAGCCACCTAACTTTTCAAGAAATACTTTTC
TTGAAGAACTGAGAACACTTTTATATGATGAAGTACAGATTATCCTGGGA
GATTTCAATATCGATGCTTTGGATGCTGCAAATGAAGACCTTGCTGATGT
GCTCTCATCATACAAACTGATAGTGAATGAACCTACTCATTTGGCAGGTG
GTCTTCTTGATCATGTGTATTTGAAAAAGACTTACTTAGATCAAAAAGAA
GTAcaatgctttgtaaaagatatatatttttcag Run BLAST on NCBI protein sequence of TCONS_00035506-protein >TCONS_00035506-protein ID=TCONS_00035506-protein|Name=TCONS_00035506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
QFPLVLSYACTSHKVQGLTLQSAVVSFELFAQKAFNEGQMYVNLSRVTNI
NGLFLIGEYNRKHIRVNNEAGIEYERLRRESSLQKVETFSPALTSSKHLH
ISLLNVRSFKKHVIDMVHSDNLISSDLICLTETQHHLQVKQMTLMNPCKV
SKLITIIIQSIDFKTLHVVQILQ Run BLAST on NCBI transcript from alignment at sc0001321:50009..51568+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035506 ID=TCONS_00035506|Name=TCONS_00035506|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at sc0001321:50009..51568+ (Clytia hemisphaerica)
CACAATTTCCTCTAGTCTTGTCTTATGCCTGTACAAGTCATAAAGTCCAA
GGATTAACACTACAATCTGCAGTAGTAAGCTTTGAATTATTTGCTCAAAA
AGCTTTCAATGAAGGCCAAATGTATGTAAATTTATCCAGAGTGACAAATA
TAAATGGGTTATTTCTGATTGGTGAATACAATAGAAAGCATATCCGTGTT
AACAATGAAGCAGGCATTGAATATGAACGATTAAGGAGAGAAAGTTcttt
gcaaaaagttgaaactttttcacCTGCTTTGACTTCCAGTAAACATTTGC
ACATTTCACTTTTAAACGTCAGATCTTTCAAAAAACATGCCAATGACATA
GTTCATTCAGATACTTTGATCAGCAGTGACTTCATATGCCTTACTGAAAC
TCAACTGTCACCTTCAAGTGAAACAAATGACATTGATCAAtccttgcaaa
atttcaaaattgattacAATAATAATTCAGTCAATAGATTTCAAAACACT
GCATGTTGTGCAAATtcttcaatagaaattttagaaTGCCAAAAAGCAGC
TGGTTATACACAGATAATGTTTAAAAAAGAGACATTTAGTGAGCAACCTA
TTACACTTCTACTCTTGTACAAGCCACCTAACTTTTCAAGAAATACTTTT
CTTGAAGAACTGAGAACACTTTTATATGATGAAGTACAGATTATCCTGGG
AGATTTCAATATCGATGCTTTGGATGCTGCAAATGAAGACCTTGCTGATG
TGCTCTCATCATACAAACTGATAGTGAATGAACCTACTCATTTGGCAGGT
GGTCTTCTTGATCATGTGTATTTGAAAAAGACttacttagataaaaaaga
agtacaatgctttgtaaaagatatatatttttcagacCATGATGGAGTTT
GCTTCACTCTATTGAACAATTCCTAAATATTCAAACATGCATAACCATAT
AGCTTACTTAGCCTGCTTATCTGNGCACATTTCACTTTTAAATGTCAGAT
CTTTCAAAAAACATGTCATTGACATGGTTCATTCAGATAATTTGATCAGC
AGTGACTTGATATGCCTTACTGAAACTCAACATCACCTTCAAGTGAAACA
AATGACATTGATGAATCcttgcaaagtttcaaaattgattaCAATAATAA
TTCAGTCAATAGATTTCAAAACACTGCATGTTGTGCAAATtcttcaatag
aaattttagaaTGCCAAAAAGCAGCTGGTTATACACAGATAATGTTTAAA
AAAGAGACATTTAGTGAGCAACCTATTACACTTCTACTCTTGTACAAGCC
ACCTAACTTTTCAAGAAATACTTTTCTTGAAGAACTGAGAACACTTTTAT
ATGATGAAGTACAGATTATCCTGGGAGATTTCAATATCGATGCTTTGGAT
GCTGCAAATGAAGACCTTGCTGATGTGCTCTCATCATACAAACTGATAGT
GAATGAACCTACTCATTTGGCAGGTGGTCTTCTTGATCATGTGTATTTGA
AAAAGACTTACTTAGATCAAAAAGAAGTAcaatgctttgtaaaagatata
tatttttcag Coding sequence (CDS) from alignment at sc0001321:50009..51568+ >TCONS_00035506 ID=TCONS_00035506|Name=TCONS_00035506|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0001321:50009..51568+ (Clytia hemisphaerica)
CAATTTCCTCTAGTCTTGTCTTATGCCTGTACAAGTCATAAAGTCCAAGG
ATTAACACTACAATCTGCAGTAGTAAGCTTTGAATTATTTGCTCAAAAAG
CTTTCAATGAAGGCCAAATGTATGTAAATTTATCCAGAGTGACAAATATA
AATGGGTTATTTCTGATTGGTGAATACAATAGAAAGCATATCCGTGTTAA
CAATGAAGCAGGCATTGAATATGAACGATTAAGGAGAGAAAGTTctttgc
aaaaagttgaaactttttcacCTGCTTTGACTTCCAGTAAACATTTGCAC
ATTTCACTTTTAAATGTCAGATCTTTCAAAAAACATGTCATTGACATGGT
TCATTCAGATAATTTGATCAGCAGTGACTTGATATGCCTTACTGAAACTC
AACATCACCTTCAAGTGAAACAAATGACATTGATGAATCcttgcaaagtt
tcaaaattgattaCAATAATAATTCAGTCAATAGATTTCAAAACACTGCA
TGTTGTGCAAATtcttcaatagCAATTTCCTCTAGTCTTGTCTTATGCCT
GTACAAGTCATAAAGTCCAAGGATTAACACTACAATCTGCAGTAGTAAGC
TTTGAATTATTTGCTCAAAAAGCTTTCAATGAAGGCCAAATGTATGTAAA
TTTATCCAGAGTGACAAATATAAATGGGTTATTTCTGATTGGTGAATACA
ATAGAAAGCATATCCGTGTTAACAATGAAGCAGGCATTGAATATGAACGA
TTAAGGAGAGAAAGTTctttgcaaaaagttgaaactttttcacCTGCTTT
GACTTCCAGTAAACATTTGCACATTTCACTTTTAAATGTCAGATCTTTCA
AAAAACATGTCATTGACATGGTTCATTCAGATAATTTGATCAGCAGTGAC
TTGATATGCCTTACTGAAACTCAACATCACCTTCAAGTGAAACAAATGAC
ATTGATGAATCcttgcaaagtttcaaaattgattaCAATAATAATTCAGT
CAATAGATTTCAAAACACTGCATGTTGTGCAAATtcttcaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035506-exon-sc0001321-1491911889:50009..50310 | TCONS_00035506-exon-sc0001321-1491911889:50009..50310 | Clytia hemisphaerica | exon |
| TCONS_00035506-exon-sc0001321-1510915933:50009..50310 | TCONS_00035506-exon-sc0001321-1510915933:50009..50310 | Clytia hemisphaerica | exon |
| TCONS_00035506-exon-sc0001321-1575043694:50009..50310 | TCONS_00035506-exon-sc0001321-1575043694:50009..50310 | Clytia hemisphaerica | exon |
| TCONS_00035506-exon-sc0001321-1491911889:50987..51568 | TCONS_00035506-exon-sc0001321-1491911889:50987..51568 | Clytia hemisphaerica | exon |
| TCONS_00035506-exon-sc0001321-1510915933:50987..51568 | TCONS_00035506-exon-sc0001321-1510915933:50987..51568 | Clytia hemisphaerica | exon |
| TCONS_00035506-exon-sc0001321-1575043694:50987..51568 | TCONS_00035506-exon-sc0001321-1575043694:50987..51568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001321 | supercontig | sc0001321:50009..51568 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
|
