TCONS_00035503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035503
Unique NameTCONS_00035503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035503 ID=TCONS_00035503|Name=TCONS_00035503|organism=Clytia hemisphaerica|type=transcript|length=520bp
TAGTGTCGTATTGTGTGTATAGTTACGTGTTCGTCCCTTGTGGATCGTCT
AGTTGTTGTATGAGTTGTTGTGATGTGTTATAAATCTGCGTGTTGGAATT
GTGAGTGTCAGTTGAAAGTGTCTGTCGACGTGTACGTGTATGTTCAGCCA
CAGTGTTTTTAGTAAGcttctatttcttcttttatatgtTATATCTTTGA
CTTGTCTTTGTAATCTAACTGATGTATCTTTATATTTTGACTTGTACTGT
ATTTATATTTCGTTAGCTAAATGTGTTACTTTATTcgtttttagccattt
tctaCCGTGAAGATGTGTTCAAGAAAACCTTTGGCTACGTGTTAATTTTT
ATGTCGTTCGCTACCTATTTTGACCCTATTTCGACCCGAACGGCAGCTAC
AGGGACGGCACTGTTCCAATGTTTGATGTCGAGATCAAGGATGTTCAGTG
TATTTCTCTTGTTGATGATGATCTCACGTTTGATCTTCTTTTCGCGGTCA
CCTTCAAAAATGGAGAAGAA
Run BLAST on NCBI

transcript from alignment at sc0001320:49345..49864

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035503 ID=TCONS_00035503|Name=TCONS_00035503|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at sc0001320:49345..49864 (Clytia hemisphaerica)
TTCTTCTCCATTTTTGAAGGTGACCGCGAAAAGAAGATCAAACGTGAGAT
CATCATCAACAAGAGAAATACACTGAACATCCTTGATCTCGACATCAAAC
ATTGGAACAGTGCCGTCCCTGTAGCTGCCGTTCGGGTCGAAATAGGGTCA
AAATAGGTAGCGAACGACATAAAAATTAACACGTAGCCAAAGGTTTTCTT
GAACACATCTTCACGGtagaaaatggctaaaaacgAATAAAGTAACACAT
TTAGCTAACGAAATATAAATACAGTACAAGTCAAAATATAAAGATACATC
AGTTAGATTACAAAGACAAGTCAAAGATATAacatataaaagaagaaata
gaagCTTACTAAAAACACTGTGGCTGAACATACACGTACACGTCGACAGA
CACTTTCAACTGACACTCACAATTCCAACACGCAGATTTATAACACATCA
CAACAACTCATACAACAACTAGACGATCCACAAGGGACGAACACGTAACT
ATACACACAATACGACACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020762XLOC_020762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035503-exon-sc0001320-1491911889:49345..49864TCONS_00035503-exon-sc0001320-1491911889:49345..49864Clytia hemisphaericaexon
TCONS_00035503-exon-sc0001320-1510915933:49345..49864TCONS_00035503-exon-sc0001320-1510915933:49345..49864Clytia hemisphaericaexon
TCONS_00035503-exon-sc0001320-1575043694:49345..49864TCONS_00035503-exon-sc0001320-1575043694:49345..49864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001320supercontigsc0001320:49345..49864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.03309	2.39176	1.51624	1.51639	0.81721	0.514502	0.733316	2.35017	0.410986	0.595362	0.346724	0.379871	0.151737	0.236371	0.453434	0.720094	0.207961	0.702199	0.736207	0	0.11987	0.968369	0.476446	0.475656	0.122479	0.437237	0.569782	0.405391	0.131692	0.285879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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