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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035482 ID=TCONS_00035482|Name=TCONS_00035482|organism=Clytia hemisphaerica|type=transcript|length=602bpRun BLAST on NCBI protein sequence of TCONS_00035482-protein >TCONS_00035482-protein ID=TCONS_00035482-protein|Name=TCONS_00035482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp MEFPKLGEHCALLSCKQLDFLPFNCDACSKIFCKDHVSYEKHQCGPGLLKRun BLAST on NCBI transcript from alignment at sc0001316:4394..24742- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035482 ID=TCONS_00035482|Name=TCONS_00035482|organism=Clytia hemisphaerica|type=transcript|length=20349bp|location=Sequence derived from alignment at sc0001316:4394..24742- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001316:4394..24742- >TCONS_00035482 ID=TCONS_00035482|Name=TCONS_00035482|organism=Clytia hemisphaerica|type=CDS|length=4104bp|location=Sequence derived from alignment at sc0001316:4394..24742- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035482 vs. Swiss-Prot (Human)
Match: ZFN2B (AN1-type zinc finger protein 2B OS=Homo sapiens GN=ZFAND2B PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.333e-55 Identity = 88/170 (51.76%), Postives = 115/170 (67.65%), Query Frame = 1
Query: 88 MEFPKLGEHCALLSCKQLDFLPFNCDACSKIFCKDHVSYEKHQCGPGLLKDRKVPVCPLCNQPVSLSATENPDRKVNEHIENDCKSDLAKHRR---SGKCNVKGCKKRELIPVKCDRCQRNFCLRHRHEADHDCKPDHLTRTHQSSADRQAGLAAVNRFQASYHLPSNPS 588
MEFP LG HC+ SC++LDFLP CDACS IFC DHV+Y +H CG KD +VPVCPLCN PV ++ E PDR V EHI+ DC+SD A+ +R + KC GC++RE++ + C+RC RNFC++HRH DHDC + H +S +AGLAA++R QA + PS
Sbjct: 1 MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCGSAYQKDIQVPVCPLCNVPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDHDCSGE----GHPTS---RAGLAAISRAQAVASTSTVPS 163 The following BLAST results are available for this feature:
BLAST of TCONS_00035482 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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