TCONS_00035463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035463
Unique NameTCONS_00035463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035463 ID=TCONS_00035463|Name=TCONS_00035463|organism=Clytia hemisphaerica|type=transcript|length=754bp
ACTCGATTGACTGATTAGTCTATTACCGCCTATGACATCTGGTCCACCCG
TATCTTCAGTCCGGTCCTTCAGGTCACCGAGACCCTTCACCTGACACCCT
CGTCCAACAATGGTCTTCAGCTTAGGTCCTTAGATCAGTATCCCTTGCGG
AATACCAATCGTCACCCCTAGCACCCTCGCCCAACAATGCTCCTTGGTGG
CGTGCCAGATATCATGCGGAGAGTCCATTTGGAATCTCAAAAAGTTCATT
TAGTTCATTGATGTAACAATAAATACTTGAAGAATACGTTTGGTTTTCAT
CAGGAACTTATAAATCATTTTACGAAAACGTTGGAACGAAAATCCATAGA
GCCCTGGAGGATCAGCAATCTACTCCAGGGTGACGACGAAATTGAAGCTG
GAAGATCAACATTCTTCTCCATATTGAACGTATATCAACAACAGAATCAA
TTGAGCCCTGGAGGATTAACAATCTACTCCAGGGTGAACGAATGCAATAA
CATACCGTATATGTTGGATGCACAATGGCGGAAGCCAGTCGACCAAAGTA
TCGTCTTTGACAGCATTTTTGATCATCTGAAGAGCAAGAGGTCTGTTTCA
GGGGGTACTCCACTGGACGGGTGGCTTCATTTCCGTTGGTGCTGAGTTGG
TTGCGATTGATACGAGGTGCGCATGGAGGGGTACATAAAACGAAGAAAAT
ACACGATTAATAACTGTGATGATTTCTTGCTAAAAGATACATAATCAGTT
GTAG
Run BLAST on NCBI

transcript from alignment at sc0001315:39054..40738+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035463 ID=TCONS_00035463|Name=TCONS_00035463|organism=Clytia hemisphaerica|type=transcript|length=1685bp|location=Sequence derived from alignment at sc0001315:39054..40738+ (Clytia hemisphaerica)
ACTCGATTGACTGATTAGTCTATTACCGCCTATGACATCTGGTCCACCCG
TATCTTCAGTCCGGTCCTTCAGGTCACCGAGACCCTTCACCTGACACCCT
CGTCCAACAATGGTCTTCAGCTTAGGTCCTTAGATCAGTATCCCTTGCGG
AATACCAATCGTCACCCCTAGCACCCTCGCCCAACAATGCTCCTTGGTGG
CGTGCCAGATATCATGCGGAGAGTCCATTTGGAATCTCAAAAAGTTCATT
TAGTTCATTGATGTAACAATAAATACTTGAAGAATACGTTTGGTTTTCAT
CAGGAACTTATAAATCATTTTACGAAAACGTTGGAACGAAAATCCATAGA
GCCCTGGAGGATCAGCAATCTACTCCAGGGTGACGACGAAATTGAAGCTG
GAAGATCAACATTCTTCTCCATATTGAACGTATATCAACAACAGAATCAA
TTGAGCCCTGGAGGATTAACAATCTACTCCAGGGTGAACGAATGCAATAA
CATACCGTATATGTTGGATGCACAATGGCGGAAGCCAGTCGACCAAAGTA
TCGTCTTTGACAGCATTTTTGATCATCTGAAGAGCAAGAGGTCTGTTTCA
GGGGGTACTCCACTGGACGGGGTACTCCACTGGACAAGTGACTTCATTTC
CGTTGGTGCTGAGTTGGTTGCGATTGAGACGAGGTGCGCATGGAGGGGTA
CATAAAACGAAGAAAATACACGATTAATAACTGTGATGATTTCTTGCTAC
CAGATACATAATCAGTTGTAGCTCACCAGACAATTTAACGTTAAATTTGA
ACATTTATATTTAACAGTccgatttcagaaaaaaatattcttctccGAAA
ACAATCACATTATGTCTCTATATTTTTCCTTTCTCCCTCCCCAACAAAAT
TCAGAGGGCTTCTTTCGATTCGTTCAGCCAATTTCTCATGTTCCTTATTG
GCTTTATTGAAGGTCGCCCAAAGTCGTCATAGGTAAAACTTAGAGTTGGT
GTACGTTCTCTCTTTGATCTCCTGGGGGGTTCTGGAACGTCACTGTCTGA
GCTTGGCGCATCTTCAACTTCAATGTCATCTAACAATATTTGTGCTGATG
GTTTAATGATTTCGAGGGGGGAGGGTCATGGCACATCCACTTGTGGAGCT
TCTGGTAAATCAATCACCCTCTTCAGTGGCATCAGGTTGTGGTCATTGTC
CTCAACTTCAGATGGTACTTCTTGGATTGCCTCTCATTGGGGGCGTGGTT
TTGGTCGGCTTCCTCATGATCTTCAATTTCGTATTGTACATTTGGTTGTA
TTTCTTCTTGCATTGTCTCCTTTTGATGGGAGGCATCTAGTTGGGTCACT
TCATGGTTTTGTCTTAGTTTGTTGGTAGACTGGCTAGGGGAGTCGAGTAG
ATTTTTCCAGAGTCTGTATGCCACtacttcattttcttcatcCGACAGCT
CTACCTCAATTCTGTATCTTGTCCTTCTTTTCTGTTGTTGTaagtttatt
cttgcctttttCTGGTACTTCCTCCTTTTGTAGGTCATTGCATTCTTTTN
AGTGGCTTCATTTCCGTTGGTGCTGAGTTGGTTGCGATTGATACGAGGTG
CGCATGGAGGGGTACATAAAACGAAGAAAATACACGATTAATAACTGTGA
TGATTTCTTGCTAAAAGATACATAATCAGTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020733XLOC_020733Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035463-exon-sc0001315-1491911889:39054..39674TCONS_00035463-exon-sc0001315-1491911889:39054..39674Clytia hemisphaericaexon
TCONS_00035463-exon-sc0001315-1510915933:39054..39674TCONS_00035463-exon-sc0001315-1510915933:39054..39674Clytia hemisphaericaexon
TCONS_00035463-exon-sc0001315-1575043694:39054..39674TCONS_00035463-exon-sc0001315-1575043694:39054..39674Clytia hemisphaericaexon
TCONS_00035463-exon-sc0001315-1491911889:40606..40738TCONS_00035463-exon-sc0001315-1491911889:40606..40738Clytia hemisphaericaexon
TCONS_00035463-exon-sc0001315-1510915933:40606..40738TCONS_00035463-exon-sc0001315-1510915933:40606..40738Clytia hemisphaericaexon
TCONS_00035463-exon-sc0001315-1575043694:40606..40738TCONS_00035463-exon-sc0001315-1575043694:40606..40738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001315supercontigsc0001315:39054..40738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.610059	0.736539	0.0742247	0.188838	1.20884	1.06266	2.08102	2.00798	0.543167	0.536723	0.491245	0.221898	1.45123	0.954453	2.91702	3.07163	3.7307	3.46778	2.33062	2.89927	1.84005	1.31637	0.725382	1.82135	0.190634	0	2.23054	0.699621	1.15655	0.461135
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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