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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035399 ID=TCONS_00035399|Name=TCONS_00035399|organism=Clytia hemisphaerica|type=transcript|length=1682bp
tgtgaaaaaatggcttagagacacaaatacttcttgggttggcttgaaac
atttgtcctttgacttattagtcttttagcaggctaaaaagtgccataaa
aattacatttttttcaaagtttgaagtttcacagattttctattttgtca
agaatttttcgcgagcataaactttcgcgaatggcccttcctagaatttt
taaagacatttactttcgcgaaaagggccaaaattcgcgaaaatcgcgaa
agtttctgctcgcgaaagtttctacgcctaaagtacttcGCCGTACAACA
GTTTATTTTTCAATTCCAAGAAACCGGAATAAAGATTCTGGAAGATTTTG
ATTGATTATTTCTTCCTCACTGAACGAGGTCAAAACAGCAAGACGCGCAA
AACATTTCAGAGTTAGGTTAATATTTGGGGAAACAATCTTATGAGCTTTG
AACAACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTACATAGAACCC
AGTATAAACCAATTCTTTCAAATTCCAATTCAATGAAAATCTCTGCATTT
CATCATTTGAATTTACATTAATCTCACTTGAAATCTGATTACTATTCAAG
TCAAACAGAAAGAAATTCGTCGATGACTTGTCCGGCTCGTAAAGCAAGGG
AATCAAAAGACGTCCAAATTTCAATATTAGACTAACAGGAAAATTGACTT
TAGTAATTTTAAGGTTCACAGGAAGTTTGAATTCTTGACTGGATCTAATA
TAACCCTCCAGAATTCTTTGCATGCAAAAGATTCCTGACTTATCCATGAA
AATGTTATTCATTGAATCACCTTCTCCAGATTGTAATAAAGACTGATAAT
TGAACAAACCAGAATCCCATGGCAGTATGTATGAAAATACAATCTTCCCA
TTAAGATCAACTTCAAAGATTTCGTACgttttaatagattttttagaaaa
atacagACTTTCTTTTGAATACAAGATGCTCAGTGTATATACaataaaat
ctcaatatattattttgaccatgattgtagcatcAAATCCTTCAAGAGCA
TATCTGTTAAATCTATAACGAATCGGGAAATTGGAAATCTTGTGTAGAAA
TGCAATGTCCTTTGTATTCTTAGTATATCTTGCTTGGTTTTGACCAAAGC
CATTATTGACAACTGGTGCATCTTCTTTGAAGTAAGAGCAATATTCTGAG
CACTTTTGAGATCTAAGTAAAAAATCACCAATTACcttgaagaaagaaat
tttggcggaaagaaaatttggcagatttggcggatttgactgaaatccgc
caaattaagttcccgccaaattaaacatttttataatatgatctctttta
aggtgtttttgctattttttcgctgttttgacgccatctcaaggttaaat
ttttaagcgaccgccaaattaaattcccgccaaatttagttttttcgtcc
atccgccaaattaaattcccgccaaaatttcttcctttaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNccgccaaattaaattcccgccaaat
ttagttttttcgtccatccgccaaattaaattcccgccaaaatttcttcc
tttaaggtaccaTAGCTCATTTGGCAAATccatattaataatttttttta
tcggTCTTTGTTTTCTTACTTTTGAACTTAAA Run BLAST on NCBI transcript from alignment at sc0001309:62076..63757+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035399 ID=TCONS_00035399|Name=TCONS_00035399|organism=Clytia hemisphaerica|type=transcript|length=1682bp|location=Sequence derived from alignment at sc0001309:62076..63757+ (Clytia hemisphaerica)
tgtgaaaaaatggcttagagacacaaatacttcttgggttggcttgaaac
atttgtcctttgacttattagtcttttagcaggctaaaaagtgccataaa
aattacatttttttcaaagtttgaagtttcacagattttctattttgtca
agaatttttcgcgagcataaactttcgcgaatggcccttcctagaatttt
taaagacatttactttcgcgaaaagggccaaaattcgcgaaaatcgcgaa
agtttctgctcgcgaaagtttctacgcctaaagtacttcGCCGTACAACA
GTTTATTTTTCAATTCCAAGAAACCGGAATAAAGATTCTGGAAGATTTTG
ATTGATTATTTCTTCCTCACTGAACGAGGTCAAAACAGCAAGACGCGCAA
AACATTTCAGAGTTAGGTTAATATTTGGGGAAACAATCTTATGAGCTTTG
AACAACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTACATAGAACCC
AGTATAAACCAATTCTTTCAAATTCCAATTCAATGAAAATCTCTGCATTT
CATCATTTGAATTTACATTAATCTCACTTGAAATCTGATTACTATTCAAG
TCAAACAGAAAGAAATTCGTCGATGACTTGTCCGGCTCGTAAAGCAAGGG
AATCAAAAGACGTCCAAATTTCAATATTAGACTAACAGGAAAATTGACTT
TAGTAATTTTAAGGTTCACAGGAAGTTTGAATTCTTGACTGGATCTAATA
TAACCCTCCAGAATTCTTTGCATGCAAAAGATTCCTGACTTATCCATGAA
AATGTTATTCATTGAATCACCTTCTCCAGATTGTAATAAAGACTGATAAT
TGAACAAACCAGAATCCCATGGCAGTATGTATGAAAATACAATCTTCCCA
TTAAGATCAACTTCAAAGATTTCGTACgttttaatagattttttagaaaa
atacagACTTTCTTTTGAATACAAGATGCTCAGTGTATATACaataaaat
ctcaatatattattttgaccatgattgtagcatcAAATCCTTCAAGAGCA
TATCTGTTAAATCTATAACGAATCGGGAAATTGGAAATCTTGTGTAGAAA
TGCAATGTCCTTTGTATTCTTAGTATATCTTGCTTGGTTTTGACCAAAGC
CATTATTGACAACTGGTGCATCTTCTTTGAAGTAAGAGCAATATTCTGAG
CACTTTTGAGATCTAAGTAAAAAATCACCAATTACcttgaagaaagaaat
tttggcggaaagaaaatttggcagatttggcggatttgactgaaatccgc
caaattaagttcccgccaaattaaacatttttataatatgatctctttta
aggtgtttttgctattttttcgctgttttgacgccatctcaaggttaaat
ttttaagcgaccgccaaattaaattcccgccaaatttagttttttcgtcc
atccgccaaattaaattcccgccaaaatttcttcctttaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNccgccaaattaaattcccgccaaat
ttagttttttcgtccatccgccaaattaaattcccgccaaaatttcttcc
tttaaggtaccaTAGCTCATTTGGCAAATccatattaataatttttttta
tcggTCTTTGTTTTCTTACTTTTGAACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035399-exon-sc0001309-1491911889:62076..63757 | TCONS_00035399-exon-sc0001309-1491911889:62076..63757 | Clytia hemisphaerica | exon |
| TCONS_00035399-exon-sc0001309-1510915933:62076..63757 | TCONS_00035399-exon-sc0001309-1510915933:62076..63757 | Clytia hemisphaerica | exon |
| TCONS_00035399-exon-sc0001309-1575043694:62076..63757 | TCONS_00035399-exon-sc0001309-1575043694:62076..63757 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001309 | supercontig | sc0001309:62076..63757 + |
Blast
The following BLAST results are available for this feature:
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