TCONS_00035393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035393
Unique NameTCONS_00035393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035393 ID=TCONS_00035393|Name=TCONS_00035393|organism=Clytia hemisphaerica|type=transcript|length=863bp
aaaaacacactaAAAAAACAACATGGTAACCAAGCTATGTAAAAAACAAA
TCAACATCCTTGATAACACCAACACGCACGGATATCAACACAACCAGAGT
TACAGACAGAGATATGGAGTGTGATGATCTTATAACAGTTCAAGTCTTTG
ATGACGAAGAGGCTGCCAGGCTATCTTTTGAAAATCCAGAGCAAGTACCT
ACGCGACACTCTAATCAAGGACCAGaaaacattcCTGTCAAAGGAACCAA
AGGAAGTAGATTGAATGGGTATCACCTGTTCTACAAAGGAAGCTCAAGCA
CTATCGTTAAGGACTCATCCCAAAAGAGAACAACTCCACCAACTCTTGGC
GAGATGAGTAAAATTGGTGGACGAAATTGGAAGAAATTACAACCTGAAGC
ACGCAAGgaaTGGATACAGAAAGGCAGGGAAGAgcgagaaagaagaagag
agCAAGGTGTGACAAAGTTTAAATGTGGGAAGtgcgaaaaaacatttaat
gGTGAGAAGTATATGCATCATCATGAAAATAGTTGCGGTGAAGCAATTTG
CTTCATCGACAATTGTGGAAAGAAATTTACTTCcacaattttattgaaaa
aacaccaaaaaacacACGACAAGACCTACGAATGTGCAGAATGTGGGAAA
TCGTTTTCAACGAAGCAGATACTCAAAGTACACATGATATCCCACACAGA
GGGGATTCCATGTGCACTTTGTGGTAGACATTTTACCAATCAATCTAATT
TGACTAGGCACACTAAAACTATTCATCATTCTCGATAGCTTTTCTCAGTT
TGGCTCAAAAAGCCcccaaaattttaataaaatgagTAATTTGAAAAGTG
CTGTTTAATAATT
Run BLAST on NCBI

protein sequence of TCONS_00035393-protein

>TCONS_00035393-protein ID=TCONS_00035393-protein|Name=TCONS_00035393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MECDDLITVQVFDDEEAARLSFENPEQVPTRHSNQGPENIPVKGTKGSRL
NGYHLFYKGSSSTIVKDSSQKRTTPPTLGEMSKIGGRNWKKLQPEARKEW
IQKGREERERRREQGVTKFKCGKCEKTFNGEKYMHHHENSCGEAICFIDN
CGKKFTSTILLKKHQKTHDKTYECAECGKSFSTKQILKVHMISHTEGIPC
ALCGRHFTNQSNLTRHTKTIHHSR
Run BLAST on NCBI

transcript from alignment at sc0001308:67132..69111-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035393 ID=TCONS_00035393|Name=TCONS_00035393|organism=Clytia hemisphaerica|type=transcript|length=1980bp|location=Sequence derived from alignment at sc0001308:67132..69111- (Clytia hemisphaerica)
AAAAACACACTAAAAAAACAACATGGTAACCAAGCTATGTAAAAAACAAA
TCAACATCCTTGATAACACCAACACGCACGGATATCAACACAACCAGAGT
TACAGACAGAGATATGGAGTGTGATGATCTTATAACAGGTAATATCTATT
TCACTTCCCTGTATTTCCATTCTCAGATGAAGCATTCAAAACATAGTCCA
TAGTTTCCTTGCTCTACATACTTTTAAAGAGAAGAAATTTTGGCGGGAAG
AAATTTTAGTTTACAGCAATGCTTCCACGTTTTTCTGCCTCTTTCACTTG
ATTTCAAGAAAATGCTATGGATTGTAAAAAGAAAAATCAAAGCTTTCTTA
GAGCTTGGGGAAAAAGAAGGAAGATAGCTCTGATTTTTCTTTTTACAATG
CATACCATAATAGCATTTTCTTGAAATCAACAAGCAAGTGAAAGAGGTAG
AAAAACGTGGAAGTATTCGAGTACTTTAGGCGTTCAAACTTTTGCAAGCA
GAAACTTACCTCATGACATGGAGACTTTTGTTCAAAAAGGATGACATGTT
GAATAACTAGTTAGTCTAGCAGAAAAACAACGATGCAGCCATGATTATTA
AAACATGCATGATGCAGTCTGATGCAGTAAATACATGCCTGTATTTAACC
TTTCCAGACTGGAATAAGCCACCAAGAAAACTGAAATCCATTATTATTGT
CATTTATATTCCTTGTTTTTCTAGTTCAAGTCTTTGATGACGAAGAGGCT
GCCAGGCTATCTTTTGAAAATCCAGAGCAAGTACCTACGCGACACTCTAA
TCAAGGACCAGGTCTGTTGCTGTGCCTTTAAACTCTTTAGCTTTAACACT
TGTGCTACTGTCATAAATGAGGGGTAACTTTTATCACCTCCAAACAGCAG
ATTGTGATTTTACAGTGATTTTTCTAATAAAAGCTATCAACATAAGTTAT
GCTATGACTTGCAACTTACAGAAGTGATTAATACAATCGTACATTTATTT
TTTTAGAAAACATTCCTGTCAAAGGAACCAAAGGAAGTAGATTGAATGGG
TATCACCTGTTCTACAAAGGAAGCTCAGTAAGTTAAGAGCTTTGTTACCC
AAATTCTTGTCTGGATATATATTTGTTTGTAGTTAAAAATCAAGTGTCAT
TTCAAAAACTTTTAGCCATAATATAGTGGAATATTTCTTCTAGTGTTTTG
TTTCATAGAATTGCTTTATTATTTGCAAAAATTCATTTGTAGAGCACTAT
CGTTAAGGACTCATCCCAAAAGAGAACAACTCCACCAACTCTTGGCGAGA
TGAGTAAAATTGGTGGACGAAATTGGAAGAAATTACAACCTGAAGCACGC
AAGGTATGATTGTTAAAACCATTATCTCTATTTCCTTGAGTCAATTAGTG
AGTGTACATTAATTTTGCAAATATTTTTCACATTATTTGATTATTTTGGA
TTATCTTTATCTTATCTATGAAAAGAAAATCATCTGTATTGTATGGTTGA
ATGTATGTTTTTTTAAATTTTCAGGAATGGATACAGAAAGGCAGGGAAGA
GCGAGAAAGAAGAAGAGAGCAAGGTGTGACAAAGTTTAAATGTGGGAAGT
GCGAAAAAACATTTAATGGTGAGAAGTATATGCATCATCATGAAAATAGT
TGCGGTGAAGCAATTTGCTTCATCGACAATTGTGGAAAGAAATTTACTTC
CACAATTTTATTGAAAAAACACCAAAAAACACACGACAAGACCTACGAAT
GTGCAGAATGTGGGAAATCGTTTTCAACGAAGCAGATACTCAAAGTACAC
ATGATATCCCACACAGAGGGGATTCCATGTGCACTTTGTGGTAGACATTT
TACCAATCAATCTAATTTGACTAGGCACACTAAAACTATTCATCATTCTC
GATAGCTTTTCTCAGTTTGGCTCAAAAAGCCCCCAAAATTTTAATAAAAT
GAGTAATTTGAAAAGTGCTGTTTAATAATT

Coding sequence (CDS) from alignment at sc0001308:67132..69111-

>TCONS_00035393 ID=TCONS_00035393|Name=TCONS_00035393|organism=Clytia hemisphaerica|type=CDS|length=3375bp|location=Sequence derived from alignment at sc0001308:67132..69111- (Clytia hemisphaerica)
GAATGGATACAGAAAGGCAGGGAAGAGCGAGAAAGAAGAAGAGAGCAAGG
TGTGACAAAGTTTAAATGTGGGAAGTGCGAAAAAACATTTAATGGTGAGA
AGTATATGCATCATCATGAAAATAGTTGCGGTGAAGCAATTTGCTTCATC
GACAATTGTGGAAAGAAATTTACTTCCACAATTTTATTGAAAAAACACCA
AAAAACACACGACAAGACCTACGAATGTGCAGAATGTGGGAAATCGTTTT
CAACGAAGCAGATACTCAAAGTACACATGATATCCCACACAGAGGGGATT
CCATGTGCACTTTGTGGTAGACATTTTACCAATCAATCTAATTTGACTAG
GCACACTAAAACTATTCATCATTCTCGATAGAGCACTATCGTTAAGGACT
CATCCCAAAAGAGAACAACTCCACCAACTCTTGGCGAGATGAGTAAAATT
GGTGGACGAAATTGGAAGAAATTACAACCTGAAGCACGCAAGAAAACATT
CCTGTCAAAGGAACCAAAGGAAGTAGATTGAATGGGTATCACCTGTTCTA
CAAAGGAAGCTCATTCAAGTCTTTGATGACGAAGAGGCTGCCAGGCTATC
TTTTGAAAATCCAGAGCAAGTACCTACGCGACACTCTAATCAAGGACCAG
ATGGAGTGTGATGATCTTATAACAGGAATGGATACAGAAAGGCAGGGAAG
AGCGAGAAAGAAGAAGAGAGCAAGGTGTGACAAAGTTTAAATGTGGGAAG
TGCGAAAAAACATTTAATGGTGAGAAGTATATGCATCATCATGAAAATAG
TTGCGGTGAAGCAATTTGCTTCATCGACAATTGTGGAAAGAAATTTACTT
CCACAATTTTATTGAAAAAACACCAAAAAACACACGACAAGACCTACGAA
TGTGCAGAATGTGGGAAATCGTTTTCAACGAAGCAGATACTCAAAGTACA
CATGATATCCCACACAGAGGGGATTCCATGTGCACTTTGTGGTAGACATT
TTACCAATCAATCTAATTTGACTAGGCACACTAAAACTATTCATCATTCT
CGATAGAGCACTATCGTTAAGGACTCATCCCAAAAGAGAACAACTCCACC
AACTCTTGGCGAGATGAGTAAAATTGGTGGACGAAATTGGAAGAAATTAC
AACCTGAAGCACGCAAGAAAACATTCCTGTCAAAGGAACCAAAGGAAGTA
GATTGAATGGGTATCACCTGTTCTACAAAGGAAGCTCATTCAAGTCTTTG
ATGACGAAGAGGCTGCCAGGCTATCTTTTGAAAATCCAGAGCAAGTACCT
ACGCGACACTCTAATCAAGGACCAGATGGAGTGTGATGATCTTATAACAG
GAATGGATACAGAAAGGCAGGGAAGAGCGAGAAAGAAGAAGAGAGCAAGG
TGTGACAAAGTTTAAATGTGGGAAGTGCGAAAAAACATTTAATGGTGAGA
AGTATATGCATCATCATGAAAATAGTTGCGGTGAAGCAATTTGCTTCATC
GACAATTGTGGAAAGAAATTTACTTCCACAATTTTATTGAAAAAACACCA
AAAAACACACGACAAGACCTACGAATGTGCAGAATGTGGGAAATCGTTTT
CAACGAAGCAGATACTCAAAGTACACATGATATCCCACACAGAGGGGATT
CCATGTGCACTTTGTGGTAGACATTTTACCAATCAATCTAATTTGACTAG
GCACACTAAAACTATTCATCATTCTCGATAGAGCACTATCGTTAAGGACT
CATCCCAAAAGAGAACAACTCCACCAACTCTTGGCGAGATGAGTAAAATT
GGTGGACGAAATTGGAAGAAATTACAACCTGAAGCACGCAAGAAAACATT
CCTGTCAAAGGAACCAAAGGAAGTAGATTGAATGGGTATCACCTGTTCTA
CAAAGGAAGCTCATTCAAGTCTTTGATGACGAAGAGGCTGCCAGGCTATC
TTTTGAAAATCCAGAGCAAGTACCTACGCGACACTCTAATCAAGGACCAG
ATGGAGTGTGATGATCTTATAACAGGAATGGATACAGAAAGGCAGGGAAG
AGCGAGAAAGAAGAAGAGAGCAAGGTGTGACAAAGTTTAAATGTGGGAAG
TGCGAAAAAACATTTAATGGTGAGAAGTATATGCATCATCATGAAAATAG
TTGCGGTGAAGCAATTTGCTTCATCGACAATTGTGGAAAGAAATTTACTT
CCACAATTTTATTGAAAAAACACCAAAAAACACACGACAAGACCTACGAA
TGTGCAGAATGTGGGAAATCGTTTTCAACGAAGCAGATACTCAAAGTACA
CATGATATCCCACACAGAGGGGATTCCATGTGCACTTTGTGGTAGACATT
TTACCAATCAATCTAATTTGACTAGGCACACTAAAACTATTCATCATTCT
CGATAGAGCACTATCGTTAAGGACTCATCCCAAAAGAGAACAACTCCACC
AACTCTTGGCGAGATGAGTAAAATTGGTGGACGAAATTGGAAGAAATTAC
AACCTGAAGCACGCAAGAAAACATTCCTGTCAAAGGAACCAAAGGAAGTA
GATTGAATGGGTATCACCTGTTCTACAAAGGAAGCTCATTCAAGTCTTTG
ATGACGAAGAGGCTGCCAGGCTATCTTTTGAAAATCCAGAGCAAGTACCT
ACGCGACACTCTAATCAAGGACCAGATGGAGTGTGATGATCTTATAACAG
GAATGGATACAGAAAGGCAGGGAAGAGCGAGAAAGAAGAAGAGAGCAAGG
TGTGACAAAGTTTAAATGTGGGAAGTGCGAAAAAACATTTAATGGTGAGA
AGTATATGCATCATCATGAAAATAGTTGCGGTGAAGCAATTTGCTTCATC
GACAATTGTGGAAAGAAATTTACTTCCACAATTTTATTGAAAAAACACCA
AAAAACACACGACAAGACCTACGAATGTGCAGAATGTGGGAAATCGTTTT
CAACGAAGCAGATACTCAAAGTACACATGATATCCCACACAGAGGGGATT
CCATGTGCACTTTGTGGTAGACATTTTACCAATCAATCTAATTTGACTAG
GCACACTAAAACTATTCATCATTCTCGATAGAGCACTATCGTTAAGGACT
CATCCCAAAAGAGAACAACTCCACCAACTCTTGGCGAGATGAGTAAAATT
GGTGGACGAAATTGGAAGAAATTACAACCTGAAGCACGCAAGAAAACATT
CCTGTCAAAGGAACCAAAGGAAGTAGATTGAATGGGTATCACCTGTTCTA
CAAAGGAAGCTCATTCAAGTCTTTGATGACGAAGAGGCTGCCAGGCTATC
TTTTGAAAATCCAGAGCAAGTACCTACGCGACACTCTAATCAAGGACCAG
ATGGAGTGTGATGATCTTATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020684XLOC_020684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035393-exon-sc0001308-1575043694:68974..69111TCONS_00035393-exon-sc0001308-1575043694:68974..69111Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1575043694:68301..68387TCONS_00035393-exon-sc0001308-1575043694:68301..68387Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1575043694:68035..68105TCONS_00035393-exon-sc0001308-1575043694:68035..68105Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1575043694:67759..67869TCONS_00035393-exon-sc0001308-1575043694:67759..67869Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1575043694:67132..67587TCONS_00035393-exon-sc0001308-1575043694:67132..67587Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1510915933:68974..69111TCONS_00035393-exon-sc0001308-1510915933:68974..69111Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1510915933:68301..68387TCONS_00035393-exon-sc0001308-1510915933:68301..68387Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1510915933:68035..68105TCONS_00035393-exon-sc0001308-1510915933:68035..68105Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1510915933:67759..67869TCONS_00035393-exon-sc0001308-1510915933:67759..67869Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1510915933:67132..67587TCONS_00035393-exon-sc0001308-1510915933:67132..67587Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1491911889:68974..69111TCONS_00035393-exon-sc0001308-1491911889:68974..69111Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1491911889:68301..68387TCONS_00035393-exon-sc0001308-1491911889:68301..68387Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1491911889:68035..68105TCONS_00035393-exon-sc0001308-1491911889:68035..68105Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1491911889:67759..67869TCONS_00035393-exon-sc0001308-1491911889:67759..67869Clytia hemisphaericaexon
TCONS_00035393-exon-sc0001308-1491911889:67132..67587TCONS_00035393-exon-sc0001308-1491911889:67132..67587Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035393-proteinTCONS_00035393-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001308supercontigsc0001308:67132..69111 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.49538	2.11599	0.737059	0.480731	7.31555	5.08715	2.16205	3.32994	2.37708	2.71791	3.40751	3.64897	1.87607	1.6111	2.12544	2.97511	3.09497	2.42092	4.61329	3.86198	2.93717	3.68395	1.99036	2.4881	5.64956	5.35398	2.82659	4.04861	1.62568	1.90169
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR009071HMG_box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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