TCONS_00035383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035383
Unique NameTCONS_00035383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035383 ID=TCONS_00035383|Name=TCONS_00035383|organism=Clytia hemisphaerica|type=transcript|length=234bp
NGAAACAACTCTACGACACGTTTTAAAGAAATGCTTCATCATCAATGGTC
GAAATCTCATGAAAAGGATCAAACGCTCATGTCAAAGATGTAGATTTCTG
GAAAAACGTACCGTTCAAATGGCAATGGGACCCATTCCAATCTTCAATTT
GACAATCGCACCATCATTCTATTTCACTCAAATGGATTTATCTAGTCCTT
ACTCATCTTATTCACCGCACCATAAACGTAccac
Run BLAST on NCBI

transcript from alignment at sc0001305:66774..67007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035383 ID=TCONS_00035383|Name=TCONS_00035383|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at sc0001305:66774..67007 (Clytia hemisphaerica)
gtggTACGTTTATGGTGCGGTGAATAAGATGAGTAAGGACTAGATAAATC
CATTTGAGTGAAATAGAATGATGGTGCGATTGTCAAATTGAAGATTGGAA
TGGGTCCCATTGCCATTTGAACGGTACGTTTTTCCAGAAATCTACATCTT
TGACATGAGCGTTTGATCCTTTTCATGAGATTTCGACCATTGATGATGAA
GCATTTCTTTAAAACGTGTCGTAGAGTTGTTTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020675XLOC_020675Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035383-exon-sc0001305-1491911889:66774..67007TCONS_00035383-exon-sc0001305-1491911889:66774..67007Clytia hemisphaericaexon
TCONS_00035383-exon-sc0001305-1510915933:66774..67007TCONS_00035383-exon-sc0001305-1510915933:66774..67007Clytia hemisphaericaexon
TCONS_00035383-exon-sc0001305-1575043694:66774..67007TCONS_00035383-exon-sc0001305-1575043694:66774..67007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001305supercontigsc0001305:66774..67007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.990625	3.86406	2.24327	4.38938	8.01548	6.33394	6.36802	10.731	0.83478	4.13604	3.01091	2.639	0.658833	0	0	0	0	5.33558	2.10611	1.10195	0	0	1.13583	0	4.25436	0.949229	1.35834	0	3.29855	1.12023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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