TCONS_00035365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035365
Unique NameTCONS_00035365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035365 ID=TCONS_00035365|Name=TCONS_00035365|organism=Clytia hemisphaerica|type=transcript|length=5475bp
atcatttcaaaaatgaaacagTGCGAAGTGTGTGGCCTTCAGTTGGCCGA
TGCTGAGGCGCTCTGTGTTCATTTGATGTTGCACATTAATCATCCGTTCA
GATGTAGTTATTGTCTCAAGAGTTACAAGACAAAAGCGTACTTGAAGATT
CATTTAAAGAAGGGAAAATGTGTAGGACAAGTAAATTTTCAAAAGCGACA
GCCACCAATCGAATTGCAATCTCAACAATTCCAACAGCAGTTTAACCAAC
AACCACAACAATTCCAACAACCACAACAATTCCAACAACCAcaacaattt
caacaacaacaacaatatcAACAACAATTCGAGCAGCTAACAGTAAACGA
ACAGCAAAATGTTCTATTTGAACAACAACTTTTACCGACAACACCTGTTT
TAGACCAGCAAATACAAAATGGGCATTCCTTTCAATTACTCGATTCAGTC
AATGAACAGATTTGAAGATCCACCTGTCAACTCTCCACCCTCATTATTTG
ATCTCATTGAGGAAATGAATGAAAGCTATATGACTGATCTTCCGGCGACA
ACAATTCAACCGGATTCGCTGGTAGATTTTAAGTTTACTATACCTCCCAC
TGTTGATGACgataaaaaatcttcaaagagTGATGATCCCCCAGTTCATA
TAGATACTCAGACATCTAATCAAAaagCTGCTAAAAAGAACAAACAATGT
ATGATTTGTAATCAATGTTTTAGCAGAGCTTCTCATCTGAAATTTCATCT
TCAGCATTGTAGTAAAAGCTCAAAGTCTCATACGTCCAAACCAGTGAAAC
GTAATCAAACAGGATCAGGAGTGAAACTTTCAAAGTCAGCTCTATCATCG
GCAGCTGAGATTTTTACTAAAGACTTGAGTGGAGAAAAGAAATTGACATT
GCCTTTCTTACTGGATGCCttcgaaaatattttagatGGCAAGAAAGTTA
ACGGTGTGAAATGtgttttatcattgtttctaATCTTTTGTAAAGATGAT
GATCCAAATAGACTGACAGATCCTCCTATAGTCTTAAAAAGTAACActtt
tacatgtttaaaatgttgAGAAAAGCTGTGGAGGAAATTGAAATCAAGAT
TGACGATTTTCAAGCCAATGGTAGTGGATGGGTTCTCCATCATTTGTTAA
AAGTAGATTTGGGATGTGTTGTGTACGATCCTTTGAAAGCTTCCTCTTAT
ATTTGTTTACCAAAAAAGATTGCTGataaaaaagcatgtattaACATCCA
AAACAAAGAAGATGACAAATGTTTTCTTTGGTCAATAATAGCATTTGATC
ATAAGCAAAATGAACATGCTGAGAGAGTTACACATTATCTTGATTATGAG
GAAGATTATGACATGGAAGATATTTCCTATCTAGTGAAGCTAAAAGATGT
GAATAAGTTCGAAAAACAAAACCCAGACTATTCGGTGAATGTGTTTGGAT
ATGATGACAAAAAGGTGTTTCCTTTACGGATTGCAGATAGTATCAAAGAT
AAACACGTCAATCTTCTACTCATTACCAATAAAGACAACCATCACTATGt
cttgatttctgatttctcaAGATTGATTCGTTCACAGGTGACAAAGAGAG
TTTCAAAGGaatatttttgctatttttgcctGCATGGATTTGTTAAAGAA
GAGACCTTGAAAAAACACATTCCATATTGTTGTGGTCATGGTCTTCAACG
CATTTACCTACCTAAAAGGAATGGTACAGATGATAAAGTGTTTTTTAATT
CGACAAAACCTATGCTTAGGATTCCCTTTGTAATGTACGCCGACTTTGAG
TGTCTGTTGCAACCATCTGAAACAGTAGTTCATGGTGGAAAAAAGGAATC
TTGGACATCGAAAGAAGAAGAACATGTACCGAGTGGTTTTGCTgtttata
caaaatgtgatgatCCACGTTATTATCAAGAGCCTTTTGTTTACAGAGGA
GATGATTTTGCAGTAAAGTTCATTGATCATGTATTAGCAGAGGCTGCTGA
gatcaaaaagatttattcaaGAAGAATGAGAGCCAACCTCACATCTGAGG
AACAAACTGAATATGATAATGCGGACAAGTGCTACTTAtgcaatgatgaa
tttattacTAATTCGGATCATCCTGATTATAAAAACAGACGAAAAGTTTT
AGATCATAATCACCTCGACTCGACGTATCGTGGAGCATGTCATTCGATAT
GTAATTTAAACTTGGCAATCAATCCAAAGACAGTTCAAATTCCATGCATC
TTTCATAATCTTAAAGGGTATGATGCTCACCTGATATTGTCGGCTGTTAA
AGCACGTCACGGTAAGGTGACTTGTATTCCTACCAATACCGAGAAATACA
TAACATTTACAATTGGAGATGTTCGATTTATTGATAGTCAACAATTTATG
CCACTCGctTTGGAAACACTGGTGGCAAATCAAAAGGGAACGTCTCCTAA
TATGAGAGAAAATTTTCCAGAGGTTACGAAATATCTAATTGATATCCATG
GAGAACATCTAGAAGATTCACACCGGCAACAAAGACTTTTCGATCACGAA
TTGTTAAATGTCTGACGATAACAATGGGAATGAGGATGAAAATAGTGATC
TCGATACAGATACAGAGTCGGTGGATTTGAATTTAGATGTAATGGACTTG
gatgaaatattggatcaagtTGTTGATTTTAGAAGACAGCCCTATACGAC
TCCGACTTTAAATACTTATCAGGATGAACAGGTAACGAGAAAGTTGGATC
TGCTTTCAAGGAAAGGTATCTTTCCGTATGAATACATGGATGATGTGAAG
AGATTTGAGGAAATGGAACTCCCGGATATAGACTTTTTTACAGCAGTCTT
ACAGAAACAACTGTGTCAGAAGCTGACTACGAACATGCTTTAAATGTTTG
GGATTGTTTCCGTATAAGAAATTTGGGGGAATTTCATGACTTATATCTTC
TTAGCGATGTGGTTCTACTGTCAGATGTTTTCGAAAGATTTCGAAGTGAA
TGTATGTTACATTACCAGCTTGATCCGGCTCATTTTTGCTCTGCGCCTGG
TTTGTCTTGGCAAGCAGCACTAAAAATGACAAAGGCTAAACTCCAGTTGT
TGTGCGATATTGATATGCATTTGTTTATCGAGGATGGTATTCGAGGTGGT
ATATGCATGATTACTGAAAGGTTTGCGAAAGCCAATCATGAACATTCTGT
ATCCTACAATCCAAATCTTCCAAAGCAATACTTAATCTATGTTGACGCTA
ATAATTTGTACGGCTTGGCAATGAGTCAACCATTACCAATTTCAAACTTT
CGCTGGCTGTTTCAAGAGGAAATCAGACGTTTCAACGTGttggatattga
aaatgatAGTGAATATGGATACATGCTAGAAGTGGATTTAGaTTATCCAG
ATTATCTTCATGATGCTCATAGAGATTACCCACTTGCCCCTGAAAAGTTA
TATGTCAAGCCGAACATGCTTTCGGGAGTTCAACTGGAAATTTTAGGAGT
CGATTCTGCTGATGAAGTTCAATCATccaaacaaatcaaattggtaCCTA
ATTTGTATAATAAGAAGAATTATATCCTTCATTATTGGAATCTGAAATTT
TACATAAATCATGGGATGAAGCTAATGAAAATTCATCGTATATTAAAGTT
TAAACAAGAACCTTGGTTAAAAAGCTACATTGATTTCAATACTGAAAGAC
GTGCAAATGCAAGAAACAGTTTCGAAAAGGAGTTTTTCAAGCTGATGAAT
AATAGCTGTTTTGGAAAAACGATGGAAAATCTTAGAAAGCGTCGAAGGAT
CGAGTTGATTACATCACGTGCGATACTAAGAAAAAGGGTTGCTCAACCGT
CTTTTCATGATTTTCACATCATCAACGAAGATCTCGTTGTGGttgaaaga
aagaaaacgtCTCTTCTTCTCAATCGACCTATTTACACTGGTCTTGCTGT
TTTGGATATTTCAAAGCTGCACATGTATCAATTTCATTATGATCACATCA
AACGCTTATATCCAGAACGAAAATCAAGGCTGCTCTTCACAGATACGGAC
TCGTTAGCGTATGCAATAAATACAGACGATATTTATGAAGATATGAAAAA
TAATGTTGATTTATATGACTTTAGTAATTATCCGGAAGATCATAAGTGTT
ATTCTGCTGCTAATAGACTAGTCATTGGAAAATTTAAAGATGAATTAGGT
TCTTTGAATATGGAAGAATTCGTCGGTCTTAGATCAAAAATGTATTCGTT
TACATACAAAATGGAAGATAAAATGAAAGAGATTAAGAAAGCAAAGGGTG
TCAAGAAAAGTGTAGTAAAACGAAAAATCTCACATATGGATTATGTTAAA
ACATTATTTGAAGATGAGGATCAATATAGAGAATGGAACTCATTTAGATC
ATATAAACATCGTATCTATACAAtaaaagtgaataaaaaatCGCTCTCAT
GTTTCGATGACAAACGCTATATTCTGGGTGATGGAATTACAACCCTTCCT
CATGgacataaaaatttaatttaattatttgtttattttttgatattata
tttatatctaattgattataattttttcatatttacaaAAAGATTTGTCC
ATATCACTGATCttcgaatttttttgtcaaattctcctttgtttttgaaa
tccATTGGGTGTTTCTCATTAATTCTGACTTTGGGATAGTTGGTTCATTC
TTAATTTCTGGATGATCTTCAAATTTTTCTCTAAGTTTTTCATTAacatc
ttcttcatcaatttcgTCTGAGAGCACTGCAAACAAGAGATCAATTCTTT
CCCTTGCAAGCATCATGAGACAATCATGATGTCTCTGGCTGGGATAGTTA
TTAATACATCCTTCACAAAACCTCTTGGAAGTAGCATCATAACTTGACAG
CATTTGCTCCACGTATATCTGACTCAGCAAATCCaataatttttcctttg
aagCAGATGGTTTTTCATTTAAGTTGAGTAATTGATTATATGCATCTTGC
ATTTGTTTGATGATTGTGGGTATTATCTTGTAGTGAATCATAACCTTTTT
TCTCTCTGTTGGATATTGAATTGATTGTTGACTAAGCATCAAAAAGTTAT
TTGGTTGTTTATCGCTTGATGCATGATTTGAAAGATCAACCAAAGTGTAT
TTTGTACTTACACTCTTCCATTGTGTTAGCCAATTATCAAATATGTCTTG
TGATGTTGGAATCcttttttctctgattttcttcttctttgaagCCTCAG
GTGCTTcttgattctttctttttctattttctgtGGAATCAGCTGTCATG
GTGAAGTACTTCTAGAAACTGATATTACCATGGTTTAAATGTTCTATTTA
TACTGGTTGGGAGGTATAATTTCAATGGATTAACATATTTCTAAGGTATT
AATAGAAAAACGTGGTGTTTTTGGATTAGTGGCATTTTCGTGGCGTatct
tgttttaaaaaaataatcaacttgc
Run BLAST on NCBI

protein sequence of TCONS_00035365-protein

>TCONS_00035365-protein ID=TCONS_00035365-protein|Name=TCONS_00035365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MLHYQLDPAHFCSAPGLSWQAALKMTKAKLQLLCDIDMHLFIEDGIRGGI
CMITERFAKANHEHSVSYNPNLPKQYLIYVDANNLYGLAMSQPLPISNFR
WLFQEEIRRFNVLDIENDSEYGYMLEVDLDYPDYLHDAHRDYPLAPEKLY
VKPNMLSGVQLEILGVDSADEVQSSKQIKLVPNLYNKKNYILHYWNLKFY
INHGMKLMKIHRILKFKQEPWLKSYIDFNTERRANARNSFEKEFFKLMNN
SCFGKTMENLRKRRRIELITSRAILRKRVAQPSFHDFHIINEDLVVVERK
KTSLLLNRPIYTGLAVLDISKLHMYQFHYDHIKRLYPERKSRLLFTDTDS
LAYAINTDDIYEDMKNNVDLYDFSNYPEDHKCYSAANRLVIGKFKDELGS
LNMEEFVGLRSKMYSFTYKMEDKMKEIKKAKGVKKSVVKRKISHMDYVKT
LFEDEDQYREWNSFRSYKHRIYTIKVNKKSLSCFDDKRYILGDGITTLPH
GHKNLI
Run BLAST on NCBI

transcript from alignment at sc0001303:25836..32252+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035365 ID=TCONS_00035365|Name=TCONS_00035365|organism=Clytia hemisphaerica|type=transcript|length=6417bp|location=Sequence derived from alignment at sc0001303:25836..32252+ (Clytia hemisphaerica)
atcatttcaaaaatgaaacagTGCGAAGTGTGTGGCCTTCAGTTGGCCGA
TGCTGAGGCGCTCTGTGTTCATTTGATGTTGCACATTAATCATCCGTTCA
GATGTAGTTATTGTCTCAAGAGTTACAAGACAAAAGCGTACTTGAAGATT
CATTTAAAGAAGGGAAAATGTGTAGGACAAGGTAATTTCTTAATTTGTTA
TACTTTTAAAGACGTAGAGGTTGACAATTGTGGATTACGATGAAGATTGT
TCATCTATTTCACTTTTAGTAAATTTTCAAAAGCGACAGCCACCAATCGA
ATTGCAATCTCAACAATTCCAACAGCAGTTTAACCAACAACCACAACAAT
TCCAACAACCACAACAATTCCAACAACCAcaacaatttcaacaacaacaa
caatatcAACAACAATTCGAGCAGCTAACAGTAAACGAACAGCAAAATGT
TCTATTTGAACAACAACTTTTACCGACAACACCTGTTTTAGACCAGCAAA
TACAAAATGGGCATTCCTTTCAATTACTCGATTCAGTCAATGAACAGATT
TGAAGATCCACCTGTCAACTCTCCACCCTCATTATTTGATCTCATTGAGG
AAATGAATGAAAGCTATATGACTGATCTTCCGGCGACAACAATTCAACCG
GATTCGCTGGTAGATTTTAAGTTTACTATACCTCCCACTGTTGATGACga
taaaaaatcttcaaagagTGATGATCCCCCAGTTCATATAGATACTCAGA
CATCTAATCAAAGTAAGTGTGAcacgtaatcttttttttttttttttttt
aaaagagaatGAAAATATGTTAAGATTAAAATATAGATTAAGGATTATCT
CTTGGATTGATATGCtctctctttctttcttttttagaagCTGCTAAAAA
GAACAAACAATGTATGATTTGTAATCAATGTTTTAGCAGAGCTTCTCATC
TGAAATTTCATCTTCAGCATTGTAGTAAAAGCTCAAAGTCTCATACGTCC
AAACCAGTGAAACGTAATCAAACAGGATCAGGAGTGAAACTTTCAAAGTC
AGCTCTATCATCGGCAGCTGAGATTTTTACTAAAGACTTGAGTGGAGAAA
AGAAATTGACATTGCCTTTCTTACTGGATGCCttcgaaaatattttagat
GGCAAGAAAGTTAACGGTGTGAAATGtgttttatcattgtttctaATCTT
TTGTAAAGATGATGATCCAAATAGACTGACAGATCCTCCTATAGTCTTAA
AAAGTAACActtttacatgtttaaaatgttgAGAAAAGCTGTGGAGGAAA
TTGAAATCAAGATTGACGATTTTCAAGCCAATGGTAGTGGATGGGTTCTC
CATCATTTGTTAAAAGTAGATTTGGGATGTGTTGTGTACGATCCTTTGAA
AGCTTCCTCTTATATTTGTTTACCAAAAAAGATTGCTGataaaaaagcat
gtattaACATCCAAAACAAAGAAGATGACAAATGTTTTCTTTGGTCAATA
ATAGCATTTGATCATAAGCAAAATGAACATGCTGAGAGAGTTACACATTA
TCTTGATTATGAGGAAGATTATGACATGGAAGATATTTCCTATCTAGTGA
AGCTAAAAGATGTGAATAAGTTCGAAAAACAAAACCCAGACTATTCGGTG
AATGTGTTTGGATATGATGACAAAAAGGTGTTTCCTTTACGGATTGCAGA
TAGTATCAAAGATAAACACGTCAATCTTCTACTCATTACCAATAAAGACA
ACCATCACTATGtcttgatttctgatttctcaAGATTGATTCGTTCACAG
GTATAAGTTTTATAGACTTAAGAGTATATTATCTAGATTGTTTGTTTGCC
TGCTTACAAATTATTGTTTTTAAGATTGATAATAATGATTTTAATCggta
atttttgtattttcttcttcttcttttttctgttGCAGGTGACAAAGAGA
GTTTCAAAGGaatatttttgctatttttgcctGCATGGATTTGTTAAAGA
AGAGACCTTGAAAAAACACATTCCATATTGTTGTGTGAGTATTTATCAGA
TTATCACAGAATGGAATTTTTTTGGCTCTATTTTATTGATTCTTCTGTTA
GGCTTTTTACACTGTTTAAtaattgatttcttttatagGGTCATGGTCTT
CAACGCATTTACCTACCTAAAAGGAATGGTACAGATGATAAAGTGTTTTT
TAATTCGACAAAACCTATGCTTAGGATTCCCTTTGTAATGTACGCCGACT
TTGAGTGTCTGTTGCAACCATCTGAAACAGTAGTTCATGGTGGAAAAAAG
GAATCTTGGACATCGAAAGAAGAAGAACATGTACCGAGTGGTTTTGCTgt
ttatacaaaatgtgatgatCCACGTTATTATCAAGAGCCTTTTGTTTACA
GAGGAGATGATTTTGCAGTAAAGTTCATTGATCATGTATTAGCAGAGGCT
GCTGAgatcaaaaagatttattcaaGAAGAATGAGAGCCAACCTCACATC
TGAGGAACAAACTGAATATGATAATGCGGACAAGTGCTACTTAtgcaatg
atgaatttattacTAATTCGGATCATCCTGATTATAAAAACAGACGAAAA
GTTTTAGATCATAATCACCTCGACTCGACGTATCGTGGAGCATGTCATTC
GATATGTAATTTAAACTTGGCAATCAATCCAAAGACAGTTCAAATTCCAT
GCATCTTTCATAATCTTAAAGGGTATGATGCTCACCTGATATTGTCGGCT
GTTAAAGCACGTCACGGTAAGGTGACTTGTATTCCTACCAATACCGAGAA
ATACATAACATTTACAATTGGAGATGTTCGATTTATTGATAGTCAACAAT
TTATGCCACTCGGTaagtttctatttttttttttttttaatacattatca
actttgttttctataaaaatgatgatgatatgttattaaatgaaatttat
tttgttatagctTTGGAAACACTGGTGGCAAATCAAAAGGGAACGTCTCC
TAATATGAGAGAAAATTTTCCAGAGGTTACGAAATATCTAATTGATATCC
ATGGAGAACATCTAGAAGATTCACACCGGCAACAAAGACTTTTCGATCAC
GAATTGTTAAATGTCTGACGATAACAATGGGAATGAGGATGAAAATAGTG
ATCTCGATACAGATACAGAGTCGGTGGATTTGAATTTAGATGTAATGGAC
TTGgatgaaatattggatcaagtTGTTGATTTTAGAAGACAGCCCTATAC
GACTCCGACTTTAAATACTTATCAGGATGAACAGGTATTACATTGATTGT
TACAAGTGTCAATAACTATCACATTTCTCTCATTTACTATTGTTAttatc
cttttttatttttgcaataaaaacttTAATATCCTTGATTTCAGGTAACG
AGAAAGTTGGATCTGCTTTCAAGGAAAGGTATCTTTCCGTATGAATACAT
GGATGATGTGAAGAGATTTGAGGAAATGGAACTCCCGGATATAGACTTTT
TTACAGCAGTCTTACAGAAACAACTGTGTCAGAAGCTGACTACGAACATG
CTTTAAATGTTTGGGATTGTTTCCGTATAAGAAATTTGGGGGAATTTCAT
GACTTATATCTTCTTAGCGATGTGGTTCTACTGTCAGATGTTTTCGAAAG
ATTTCGAAGTGAATGTATGTTACATTACCAGCTTGATCCGGCTCATTTTT
GCTCTGCGCCTGGTTTGTCTTGGCAAGCAGCACTAAAAATGACAAAGGCT
AAACTCCAGTTGTTGTGCGATATTGATATGCATTTGTTTATCGAGGATGG
TATTCGAGGTGGTATATGCATGATTACTGAAAGGTAcatttaattctttt
tgtatttgttttgtataaaaactttCTAAGGgcgttttgaaaacattaaa
tcacTTATCTTTTAGGTTTGCGAAAGCCAATCATGAACATTCTGTATCCT
ACAATCCAAATCTTCCAAAGCAATACTTAATCTATGTTGACGCTAATAAT
TTGTACGGCTTGGCAATGAGTCAACCATTACCAATTTCAAACTTTCGCTG
GCTGTTTCAAGAGGAAATCAGACGTTTCAACGTGttggatattgaaaatg
atAGTGAATATGGATACATGCTAGAAGTGGATTTAGGTATGTTGATTGAA
TGAAATATATTGTTACATctgatctttgaaaaaattaatattcTATTAAT
ACTattcttttttgactttttctttttttactttagaTTATCCAGATTAT
CTTCATGATGCTCATAGAGATTACCCACTTGCCCCTGAAAAGTTATATGT
CAAGCCGAACATGCTTTCGGGAGTTCAACTGGAAATTTTAGGAGTCGATT
CTGCTGATGAAGTTCAATCATccaaacaaatcaaattggtaCCTAATTTG
TATAATAAGAAGAATTATATCCTTCATTATTGGAATCTGAAATTTTACAT
AAATCATGGGATGAAGCTAATGAAAATTCATCGTATATTAAAGTTTAAAC
AAGAACCTTGGTTAAAAAGCTACATTGATTTCAATACTGAAAGACGTGCA
AATGCAAGAAACAGTTTCGAAAAGGAGTTTTTCAAGCTGATGAATAATAG
CTGTTTTGGAAAAACGATGGAAAATCTTAGAAAGCGTCGAAGGATCGAGT
TGATTACATCACGTGCGATACTAAGAAAAAGGGTTGCTCAACCGTCTTTT
CATGATTTTCACATCATCAACGAAGATCTCGTTGTGGttgaaagaaagaa
aacgtCTCTTCTTCTCAATCGACCTATTTACACTGGTCTTGCTGTTTTGG
ATATTTCAAAGGTATGTCGTTTTTGCTTAATGGATTtgaataatattttg
attttctcaatCATCGTAAAATAAAGTATCTAATAATCTTTCTTTCAATT
ACCTTTAGCTGCACATGTATCAATTTCATTATGATCACATCAAACGCTTA
TATCCAGAACGAAAATCAAGGCTGCTCTTCACAGATACGGACTCGTTAGC
GTATGCAATAAATACAGACGATATTTATGAAGATATGAAAAATAATGTTG
ATTTATATGACTTTAGTAATTATCCGGAAGATCATAAGTGTTATTCTGCT
GCTAATAGACTAGTCATTGGAAAATTTAAAGATGAATTAGGTTCTTTGAA
TATGGAAGAATTCGTCGGTCTTAGATCAAAAATGTATTCGTTTACATACA
AAATGGAAGATAAAATGAAAGAGATTAAGAAAGCAAAGGGTGTCAAGAAA
AGTGTAGTAAAACGAAAAATCTCACATATGGATTATGTTAAAACATTATT
TGAAGATGAGGATCAATATAGAGAATGGAACTCATTTAGATCATATAAAC
ATCGTATCTATACAAtaaaagtgaataaaaaatCGCTCTCATGTTTCGAT
GACAAACGCTATATTCTGGGTGATGGAATTACAACCCTTCCTCATGgaca
taaaaatttaatttaattatttgtttattttttgatattatatttatatc
taattgattataattttttcatatttacaaAAAGATTTGTCCATATCACT
GATCttcgaatttttttgtcaaattctcctttgtttttgaaatccATTGG
GTGTTTCTCATTAATTCTGACTTTGGGATAGTTGGTTCATTCTTAATTTC
TGGATGATCTTCAAATTTTTCTCTAAGTTTTTCATTAacatcttcttcat
caatttcgTCTGAGAGCACTGCAAACAAGAGATCAATTCTTTCCCTTGCA
AGCATCATGAGACAATCATGATGTCTCTGGCTGGGATAGTTATTAATACA
TCCTTCACAAAACCTCTTGGAAGTAGCATCATAACTTGACAGCATTTGCT
CCACGTATATCTGACTCAGCAAATCCaataatttttcctttgaagCAGAT
GGTTTTTCATTTAAGTTGAGTAATTGATTATATGCATCTTGCATTTGTTT
GATGATTGTGGGTATTATCTTGTAGTGAATCATAACCTTTTTTCTCTCTG
TTGGATATTGAATTGATTGTTGACTAAGCATCAAAAAGTTATTTGGTTGT
TTATCGCTTGATGCATGATTTGAAAGATCAACCAAAGTGTATTTTGTACT
TACACTCTTCCATTGTGTTAGCCAATTATCAAATATGTCTTGTGATGTTG
GAATCcttttttctctgattttcttcttctttgaagCCTCAGGTGCTTct
tgattctttctttttctattttctgtGGAATCAGCTGTCATGGTGAAGTA
CTTCTAGAAACTGATATTACCATGGTTTAAATGTTCTATTTATACTGGTT
GGGAGGTATAATTTCAATGGATTAACATATTTCTAAGGTATTAATAGAAA
AACGTGGTGTTTTTGGATTAGTGGCATTTTCGTGGCGTatcttgttttaa
aaaaataatcaacttgc

Coding sequence (CDS) from alignment at sc0001303:25836..32252+

>TCONS_00035365 ID=TCONS_00035365|Name=TCONS_00035365|organism=Clytia hemisphaerica|type=CDS|length=6084bp|location=Sequence derived from alignment at sc0001303:25836..32252+ (Clytia hemisphaerica)
ATGTTACATTACCAGCTTGATCCGGCTCATTTTTGCTCTGCGCCTGGTTT
GTCTTGGCAAGCAGCACTAAAAATGACAAAGGCTAAACTCCAGTTGTTGT
GCGATATTGATATGCATTTGTTTATCGAGGATGGTATTCGAGGTGGTATA
TGCATGATTACTGAAAGGTTTGCGAAAGCCAATCATGAACATTCTGTATC
CTACAATCCAAATCTTCCAAAGCAATACTTAATCTATGTTGACGCTAATA
ATTTGTACGGCTTGGCAATGAGTCAACCATTACCAATTTCAAACTTTCGC
TGGCTGTTTCAAGAGGAAATCAGACGTTTCAACGTGttggatattgaaaa
tgatAGTGAATATGGATACATGCTAGAAGTGGATTTAGaTTATCCAGATT
ATCTTCATGATGCTCATAGAGATTACCCACTTGCCCCTGAAAAGTTATAT
GTCAAGCCGAACATGCTTTCGGGAGTTCAACTGGAAATTTTAGGAGTCGA
TTCTGCTGATGAAGTTCAATCATccaaacaaatcaaattggtaCCTAATT
TGTATAATAAGAAGAATTATATCCTTCATTATTGGAATCTGAAATTTTAC
ATAAATCATGGGATGAAGCTAATGAAAATTCATCGTATATTAAAGTTTAA
ACAAGAACCTTGGTTAAAAAGCTACATTGATTTCAATACTGAAAGACGTG
CAAATGCAAGAAACAGTTTCGAAAAGGAGTTTTTCAAGCTGATGAATAAT
AGCTGTTTTGGAAAAACGATGGAAAATCTTAGAAAGCGTCGAAGGATCGA
GTTGATTACATCACGTGCGATACTAAGAAAAAGGGTTGCTCAACCGTCTT
TTCATGATTTTCACATCATCAACGAAGATCTCGTTGTGGttgaaagaaag
aaaacgtCTCTTCTTCTCAATCGACCTATTTACACTGGTCTTGCTGTTTT
GGATATTTCAAAGCTGCACATGTATCAATTTCATTATGATCACATCAAAC
GCTTATATCCAGAACGAAAATCAAGGCTGCTCTTCACAGATACGGACTCG
TTAGCGTATGCAATAAATACAGACGATATTTATGAAGATATGAAAAATAA
TGTTGATTTATATGACTTTAGTAATTATCCGGAAGATCATAAGTGTTATT
CTGCTGCTAATAGACTAGTCATTGGAAAATTTAAAGATGAATTAGGTTCT
TTGAATATGGAAGAATTCGTCGGTCTTAGATCAAAAATGTATTCGTTTAC
ATACAAAATGGAAGATAAAATGAAAGAGATTAAGAAAGCAAAGGGTGTCA
AGAAAAGTGTAGTAAAACGAAAAATCTCACATATGGATTATGTTAAAACA
TTATTTGAAGATGAGGATCAATATAGAGAATGGAACTCATTTAGATCATA
TAAACATCGTATCTATACAAtaaaagtgaataaaaaatCGCTCTCATGTT
TCGATGACAAACGCTATATTCTGGGTGATGGAATTACAACCCTTCCTCAT
GgacataaaaatttaatttaaATGTTACATTACCAGCTTGATCCGGCTCA
TTTTTGCTCTGCGCCTGGTTTGTCTTGGCAAGCAGCACTAAAAATGACAA
AGGCTAAACTCCAGTTGTTGTGCGATATTGATATGCATTTGTTTATCGAG
GATGGTATTCGAGGTGGTATATGCATGATTACTGAAAGGTTTGCGAAAGC
CAATCATGAACATTCTGTATCCTACAATCCAAATCTTCCAAAGCAATACT
TAATCTATGTTGACGCTAATAATTTGTACGGCTTGGCAATGAGTCAACCA
TTACCAATTTCAAACTTTCGCTGGCTGTTTCAAGAGGAAATCAGACGTTT
CAACGTGttggatattgaaaatgatAGTGAATATGGATACATGCTAGAAG
TGGATTTAGaTTATCCAGATTATCTTCATGATGCTCATAGAGATTACCCA
CTTGCCCCTGAAAAGTTATATGTCAAGCCGAACATGCTTTCGGGAGTTCA
ACTGGAAATTTTAGGAGTCGATTCTGCTGATGAAGTTCAATCATccaaac
aaatcaaattggtaCCTAATTTGTATAATAAGAAGAATTATATCCTTCAT
TATTGGAATCTGAAATTTTACATAAATCATGGGATGAAGCTAATGAAAAT
TCATCGTATATTAAAGTTTAAACAAGAACCTTGGTTAAAAAGCTACATTG
ATTTCAATACTGAAAGACGTGCAAATGCAAGAAACAGTTTCGAAAAGGAG
TTTTTCAAGCTGATGAATAATAGCTGTTTTGGAAAAACGATGGAAAATCT
TAGAAAGCGTCGAAGGATCGAGTTGATTACATCACGTGCGATACTAAGAA
AAAGGGTTGCTCAACCGTCTTTTCATGATTTTCACATCATCAACGAAGAT
CTCGTTGTGGttgaaagaaagaaaacgtCTCTTCTTCTCAATCGACCTAT
TTACACTGGTCTTGCTGTTTTGGATATTTCAAAGCTGCACATGTATCAAT
TTCATTATGATCACATCAAACGCTTATATCCAGAACGAAAATCAAGGCTG
CTCTTCACAGATACGGACTCGTTAGCGTATGCAATAAATACAGACGATAT
TTATGAAGATATGAAAAATAATGTTGATTTATATGACTTTAGTAATTATC
CGGAAGATCATAAGTGTTATTCTGCTGCTAATAGACTAGTCATTGGAAAA
TTTAAAGATGAATTAGGTTCTTTGAATATGGAAGAATTCGTCGGTCTTAG
ATCAAAAATGTATTCGTTTACATACAAAATGGAAGATAAAATGAAAGAGA
TTAAGAAAGCAAAGGGTGTCAAGAAAAGTGTAGTAAAACGAAAAATCTCA
CATATGGATTATGTTAAAACATTATTTGAAGATGAGGATCAATATAGAGA
ATGGAACTCATTTAGATCATATAAACATCGTATCTATACAAtaaaagtga
ataaaaaatCGCTCTCATGTTTCGATGACAAACGCTATATTCTGGGTGAT
GGAATTACAACCCTTCCTCATGgacataaaaatttaatttaaATGTTACA
TTACCAGCTTGATCCGGCTCATTTTTGCTCTGCGCCTGGTTTGTCTTGGC
AAGCAGCACTAAAAATGACAAAGGCTAAACTCCAGTTGTTGTGCGATATT
GATATGCATTTGTTTATCGAGGATGGTATTCGAGGTGGTATATGCATGAT
TACTGAAAGGTTTGCGAAAGCCAATCATGAACATTCTGTATCCTACAATC
CAAATCTTCCAAAGCAATACTTAATCTATGTTGACGCTAATAATTTGTAC
GGCTTGGCAATGAGTCAACCATTACCAATTTCAAACTTTCGCTGGCTGTT
TCAAGAGGAAATCAGACGTTTCAACGTGttggatattgaaaatgatAGTG
AATATGGATACATGCTAGAAGTGGATTTAGaTTATCCAGATTATCTTCAT
GATGCTCATAGAGATTACCCACTTGCCCCTGAAAAGTTATATGTCAAGCC
GAACATGCTTTCGGGAGTTCAACTGGAAATTTTAGGAGTCGATTCTGCTG
ATGAAGTTCAATCATccaaacaaatcaaattggtaCCTAATTTGTATAAT
AAGAAGAATTATATCCTTCATTATTGGAATCTGAAATTTTACATAAATCA
TGGGATGAAGCTAATGAAAATTCATCGTATATTAAAGTTTAAACAAGAAC
CTTGGTTAAAAAGCTACATTGATTTCAATACTGAAAGACGTGCAAATGCA
AGAAACAGTTTCGAAAAGGAGTTTTTCAAGCTGATGAATAATAGCTGTTT
TGGAAAAACGATGGAAAATCTTAGAAAGCGTCGAAGGATCGAGTTGATTA
CATCACGTGCGATACTAAGAAAAAGGGTTGCTCAACCGTCTTTTCATGAT
TTTCACATCATCAACGAAGATCTCGTTGTGGttgaaagaaagaaaacgtC
TCTTCTTCTCAATCGACCTATTTACACTGGTCTTGCTGTTTTGGATATTT
CAAAGCTGCACATGTATCAATTTCATTATGATCACATCAAACGCTTATAT
CCAGAACGAAAATCAAGGCTGCTCTTCACAGATACGGACTCGTTAGCGTA
TGCAATAAATACAGACGATATTTATGAAGATATGAAAAATAATGTTGATT
TATATGACTTTAGTAATTATCCGGAAGATCATAAGTGTTATTCTGCTGCT
AATAGACTAGTCATTGGAAAATTTAAAGATGAATTAGGTTCTTTGAATAT
GGAAGAATTCGTCGGTCTTAGATCAAAAATGTATTCGTTTACATACAAAA
TGGAAGATAAAATGAAAGAGATTAAGAAAGCAAAGGGTGTCAAGAAAAGT
GTAGTAAAACGAAAAATCTCACATATGGATTATGTTAAAACATTATTTGA
AGATGAGGATCAATATAGAGAATGGAACTCATTTAGATCATATAAACATC
GTATCTATACAAtaaaagtgaataaaaaatCGCTCTCATGTTTCGATGAC
AAACGCTATATTCTGGGTGATGGAATTACAACCCTTCCTCATGgacataa
aaatttaatttaaATGTTACATTACCAGCTTGATCCGGCTCATTTTTGCT
CTGCGCCTGGTTTGTCTTGGCAAGCAGCACTAAAAATGACAAAGGCTAAA
CTCCAGTTGTTGTGCGATATTGATATGCATTTGTTTATCGAGGATGGTAT
TCGAGGTGGTATATGCATGATTACTGAAAGGTTTGCGAAAGCCAATCATG
AACATTCTGTATCCTACAATCCAAATCTTCCAAAGCAATACTTAATCTAT
GTTGACGCTAATAATTTGTACGGCTTGGCAATGAGTCAACCATTACCAAT
TTCAAACTTTCGCTGGCTGTTTCAAGAGGAAATCAGACGTTTCAACGTGt
tggatattgaaaatgatAGTGAATATGGATACATGCTAGAAGTGGATTTA
GaTTATCCAGATTATCTTCATGATGCTCATAGAGATTACCCACTTGCCCC
TGAAAAGTTATATGTCAAGCCGAACATGCTTTCGGGAGTTCAACTGGAAA
TTTTAGGAGTCGATTCTGCTGATGAAGTTCAATCATccaaacaaatcaaa
ttggtaCCTAATTTGTATAATAAGAAGAATTATATCCTTCATTATTGGAA
TCTGAAATTTTACATAAATCATGGGATGAAGCTAATGAAAATTCATCGTA
TATTAAAGTTTAAACAAGAACCTTGGTTAAAAAGCTACATTGATTTCAAT
ACTGAAAGACGTGCAAATGCAAGAAACAGTTTCGAAAAGGAGTTTTTCAA
GCTGATGAATAATAGCTGTTTTGGAAAAACGATGGAAAATCTTAGAAAGC
GTCGAAGGATCGAGTTGATTACATCACGTGCGATACTAAGAAAAAGGGTT
GCTCAACCGTCTTTTCATGATTTTCACATCATCAACGAAGATCTCGTTGT
GGttgaaagaaagaaaacgtCTCTTCTTCTCAATCGACCTATTTACACTG
GTCTTGCTGTTTTGGATATTTCAAAGCTGCACATGTATCAATTTCATTAT
GATCACATCAAACGCTTATATCCAGAACGAAAATCAAGGCTGCTCTTCAC
AGATACGGACTCGTTAGCGTATGCAATAAATACAGACGATATTTATGAAG
ATATGAAAAATAATGTTGATTTATATGACTTTAGTAATTATCCGGAAGAT
CATAAGTGTTATTCTGCTGCTAATAGACTAGTCATTGGAAAATTTAAAGA
TGAATTAGGTTCTTTGAATATGGAAGAATTCGTCGGTCTTAGATCAAAAA
TGTATTCGTTTACATACAAAATGGAAGATAAAATGAAAGAGATTAAGAAA
GCAAAGGGTGTCAAGAAAAGTGTAGTAAAACGAAAAATCTCACATATGGA
TTATGTTAAAACATTATTTGAAGATGAGGATCAATATAGAGAATGGAACT
CATTTAGATCATATAAACATCGTATCTATACAAtaaaagtgaataaaaaa
tCGCTCTCATGTTTCGATGACAAACGCTATATTCTGGGTGATGGAATTAC
AACCCTTCCTCATGgacataaaaatttaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020657XLOC_020657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035365-exon-sc0001303-1491911889:25836..26016TCONS_00035365-exon-sc0001303-1491911889:25836..26016Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:25836..26016TCONS_00035365-exon-sc0001303-1510915933:25836..26016Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:25836..26016TCONS_00035365-exon-sc0001303-1575043694:25836..26016Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:26105..26597TCONS_00035365-exon-sc0001303-1491911889:26105..26597Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:26105..26597TCONS_00035365-exon-sc0001303-1510915933:26105..26597Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:26105..26597TCONS_00035365-exon-sc0001303-1575043694:26105..26597Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:26723..27635TCONS_00035365-exon-sc0001303-1491911889:26723..27635Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:26723..27635TCONS_00035365-exon-sc0001303-1510915933:26723..27635Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:26723..27635TCONS_00035365-exon-sc0001303-1575043694:26723..27635Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:27774..27869TCONS_00035365-exon-sc0001303-1491911889:27774..27869Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:27774..27869TCONS_00035365-exon-sc0001303-1510915933:27774..27869Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:27774..27869TCONS_00035365-exon-sc0001303-1575043694:27774..27869Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:27974..28697TCONS_00035365-exon-sc0001303-1491911889:27974..28697Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:27974..28697TCONS_00035365-exon-sc0001303-1510915933:27974..28697Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:27974..28697TCONS_00035365-exon-sc0001303-1575043694:27974..28697Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:28796..29119TCONS_00035365-exon-sc0001303-1491911889:28796..29119Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:28796..29119TCONS_00035365-exon-sc0001303-1510915933:28796..29119Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:28796..29119TCONS_00035365-exon-sc0001303-1575043694:28796..29119Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:29230..29668TCONS_00035365-exon-sc0001303-1491911889:29230..29668Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:29230..29668TCONS_00035365-exon-sc0001303-1510915933:29230..29668Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:29230..29668TCONS_00035365-exon-sc0001303-1575043694:29230..29668Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:29751..29971TCONS_00035365-exon-sc0001303-1491911889:29751..29971Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:29751..29971TCONS_00035365-exon-sc0001303-1510915933:29751..29971Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:29751..29971TCONS_00035365-exon-sc0001303-1575043694:29751..29971Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:30072..30646TCONS_00035365-exon-sc0001303-1491911889:30072..30646Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:30072..30646TCONS_00035365-exon-sc0001303-1510915933:30072..30646Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:30072..30646TCONS_00035365-exon-sc0001303-1575043694:30072..30646Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1491911889:30744..32252TCONS_00035365-exon-sc0001303-1491911889:30744..32252Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1510915933:30744..32252TCONS_00035365-exon-sc0001303-1510915933:30744..32252Clytia hemisphaericaexon
TCONS_00035365-exon-sc0001303-1575043694:30744..32252TCONS_00035365-exon-sc0001303-1575043694:30744..32252Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035365-proteinTCONS_00035365-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001303supercontigsc0001303:25836..32252 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148217	0.105116	0.0533969	0.0970181	0.199879	0.208203	0.658285	0.770348	0.369021	0.217998	0.866854	0.812128	0.215071	0.265233	0.206581	0.238114	1.0368	0.969374	0.25066	0.517102	3.12013	2.39245	1.34409	1.59418	1.1067	1.65263	60.5732	51.2667	0.426228	0.358074
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023211DNA_pol_palm_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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