TCONS_00035351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035351
Unique NameTCONS_00035351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035351 ID=TCONS_00035351|Name=TCONS_00035351|organism=Clytia hemisphaerica|type=transcript|length=709bp
TGATGATATTAATCTGCTCAAATCACAAGTTAAAGCTCTGTCGAACAAAT
TAACTCAAGCCACAAAAATGATCACTGAAACCAACCAAAAGCTATCATTG
ACAAACCAGAAGCTGGCCCATGTCACGCAAGAGAATCGTTATTTGACCAT
GAAAGATCAAGTGCAAAATGGAGTTTGTCATTTCAGCACAAATCCATGCG
AACCGTGTTTTTGCGTTGAAGATTACAGCGTGGTGGAAAAGTACTATTGT
GATTGCCGAGCTCAGCCCATCAGACGTGACTACAAGGAGCATTATGACCA
AGGTGAGCGAATAAGCGGACTGTATGTCATTAATAAGAACGCTTATTCAT
TGGCTGTTCAAGTGTATTGTGATCACGTGACAGATGGTGGTGGCTGGACC
GTCTTACAGAGACGCGTCGACGGGTCCGAAAACTTTTATCGGAATTGGAC
GGAATATGAAATTGGATTTGGACGCCTCAATCGAGAATTCTGGCTTGGTA
ATGAGAACTTATACCGTTTAACAGCTCAAGCTTTTATGAAAGGTTCCGAA
GTTCGATTTGACATGCAAAAGAGGGGAAGTAGTTCTTTGATGTGGGCAAA
ATATTCCAATTTTGAAGTAACCAGTAAATCTACAGGATACGAATTACACA
TATCGGGATATTCGGGAAATGCTGGTGATCACATGACTTAtcacaatgga
gcaaaattt
Run BLAST on NCBI

protein sequence of TCONS_00035351-protein

>TCONS_00035351-protein ID=TCONS_00035351-protein|Name=TCONS_00035351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
DDINLLKSQVKALSNKLTQATKMITETNQKLSLTNQKLAHVTQENRYLTM
KDQVQNGVCHFSTNPCEPCFCVEDYSVVEKYYCDCRAQPIRRDYKEHYDQ
GERISGLYVINKNAYSLAVQVYCDHVTDGGGWTVLQRRVDGSENFYRNWT
EYEIGFGRLNREFWLGNENLYRLTAQAFMKGSEVRFDMQKRGSSSLMWAK
YSNFEVTSKSTGYELHISGYSGNAGDHMTYHNGAKF
Run BLAST on NCBI

transcript from alignment at sc0001301:3278..3986

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035351 ID=TCONS_00035351|Name=TCONS_00035351|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at sc0001301:3278..3986 (Clytia hemisphaerica)
aaattttgctccattgtgaTAAGTCATGTGATCACCAGCATTTCCCGAAT
ATCCCGATATGTGTAATTCGTATCCTGTAGATTTACTGGTTACTTCAAAA
TTGGAATATTTTGCCCACATCAAAGAACTACTTCCCCTCTTTTGCATGTC
AAATCGAACTTCGGAACCTTTCATAAAAGCTTGAGCTGTTAAACGGTATA
AGTTCTCATTACCAAGCCAGAATTCTCGATTGAGGCGTCCAAATCCAATT
TCATATTCCGTCCAATTCCGATAAAAGTTTTCGGACCCGTCGACGCGTCT
CTGTAAGACGGTCCAGCCACCACCATCTGTCACGTGATCACAATACACTT
GAACAGCCAATGAATAAGCGTTCTTATTAATGACATACAGTCCGCTTATT
CGCTCACCTTGGTCATAATGCTCCTTGTAGTCACGTCTGATGGGCTGAGC
TCGGCAATCACAATAGTACTTTTCCACCACGCTGTAATCTTCAACGCAAA
AACACGGTTCGCATGGATTTGTGCTGAAATGACAAACTCCATTTTGCACT
TGATCTTTCATGGTCAAATAACGATTCTCTTGCGTGACATGGGCCAGCTT
CTGGTTTGTCAATGATAGCTTTTGGTTGGTTTCAGTGATCATTTTTGTGG
CTTGAGTTAATTTGTTCGACAGAGCTTTAACTTGTGATTTGAGCAGATTA
ATATCATCA

Coding sequence (CDS) from alignment at sc0001301:3278..3986

>TCONS_00035351 ID=TCONS_00035351|Name=TCONS_00035351|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0001301:3278..3986 (Clytia hemisphaerica)
aaattttgctccattgtgaTAAGTCATGTGATCACCAGCATTTCCCGAAT
ATCCCGATATGTGTAATTCGTATCCTGTAGATTTACTGGTTACTTCAAAA
TTGGAATATTTTGCCCACATCAAAGAACTACTTCCCCTCTTTTGCATGTC
AAATCGAACTTCGGAACCTTTCATAAAAGCTTGAGCTGTTAAACGGTATA
AGTTCTCATTACCAAGCCAGAATTCTCGATTGAGGCGTCCAAATCCAATT
TCATATTCCGTCCAATTCCGATAAAAGTTTTCGGACCCGTCGACGCGTCT
CTGTAAGACGGTCCAGCCACCACCATCTGTCACGTGATCACAATACACTT
GAACAGCCAATGAATAAGCGTTCTTATTAATGACATACAGTCCGCTTATT
CGCTCACCTTGGTCATAATGCTCCTTGTAGTCACGTCTGATGGGCTGAGC
TCGGCAATCACAATAGTACTTTTCCACCACGCTGTAATCTTCAACGCAAA
AACACGGTTCGCATGGATTTGTGCTGAAATGACAAACTCCATTTTGCACT
TGATCTTTCATGGTCAAATAACGATTCTCTTGCGTGACATGGGCCAGCTT
CTGGTTTGTCAATGATAGCTTTTGGTTGGTTTCAGTGATCATTTTTGTGG
CTTGAGTTAATTTGTTCGACAGAGCTTTAACTTGTGATTTGAGCAGATTA
ATATCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020645XLOC_020645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035351-exon-sc0001301-1491911889:3278..3986TCONS_00035351-exon-sc0001301-1491911889:3278..3986Clytia hemisphaericaexon
TCONS_00035351-exon-sc0001301-1510915933:3278..3986TCONS_00035351-exon-sc0001301-1510915933:3278..3986Clytia hemisphaericaexon
TCONS_00035351-exon-sc0001301-1575043694:3278..3986TCONS_00035351-exon-sc0001301-1575043694:3278..3986Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035351-proteinTCONS_00035351-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001301supercontigsc0001301:3278..3986 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.740679	0.242412	0.783889	1.04749	0	0	0	0	0	0	0	0	0.862707	0.689352	2.51427	4.78211	0.745724	0.183354	1.48088	2.09625	0.417317	0.678392	1.82308	1.00282	1.36102	2.73453	0	0	0	0.398304
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00035351 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.465e-33
Identity = 67/181 (37.02%), Postives = 110/181 (60.77%), Query Frame = 2 
Query:  185 STNPCEPCFCVEDYSVVEKYYCDCRAQPIRRDYKEHYDQGERISGLYVINKNAYSLAVQVYCDHVTDGGGWTVLQRRVDGSENFYRNWTEYEIGFGRLNREFWLGNENLYRLTAQAFMKGSEVRFDMQKRGSSSLMWAKYSNFE-----VTSKSTGYELHISGY-SGNAGDHMTYHNGAKF 709
            ST PC P         +E++   C  QP+  D  + Y QG +  G+Y+I  +  S+ V V+CD  T+GG WTV Q+R +GS +F+R W +Y++GFGR + E+WLG +N++ LT +   +  E+R D++    ++  +AKY++F      V+++  GY L ++G+  G AGD ++YH+G KF
Sbjct:   14 STPPCAPQVSGIRGDALERF---CLQQPL--DCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTEGGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLK---QKYELRVDLEDF-ENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGGAGDSLSYHSGQKF 185
The following BLAST results are available for this feature:
BLAST of TCONS_00035351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFAP41.465e-3337.02Microfibril-associated glycoprotein 4 OS=Homo sapi... [more]
back to top