TCONS_00035342 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035342
Unique Name	TCONS_00035342
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2750

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001298:13038..18489-

transcript sequence

>TCONS_00035342 ID=TCONS_00035342|Name=TCONS_00035342|organism=Clytia hemisphaerica|type=transcript|length=2750bp
tactagggcaagatgggttacggggatgctccgctggtcagggtaccttt
tttaacctccacgagtcccaggtagggtcgcaaaaacaccaaaacagaaa
aatcagtccctcgtagggtgcctttctttggaaaatttggggaaaaagcg
ggaaaaagtagaaaatttagaaaattttggaatttcagtcccattcaggg
tcacttttttcgcaaatttcgagtcccacgtagggtccatttttcgaatc
tcagcggagcacccccgtcggtcgacaagggtagtacccccccgggNTTT
CTTTACAGAAATATTAACCATCTGTGAAAAATGTCTTTTAATCAAATAGT
GCACATGCTGTTAAATGTAAGAAATAATACAATATCAAAAGCAAAGTTTC
TAATTTtcctatttcaaaatttcaacctattacaaaattacaatactccg
aaaatggttgaaatataGTATGCCTAAAATTGAATGTTACTTCTAGGTAA
GAAAGATAATGATCCTATAAGAAGCAAATATTGACTCATCAGACCTTTTG
AgttcaaaaagaaattcttgTCTTGGCtttggaaaaagaaaactttcggA
TGAGGTggttaagaaaataaaaatgtgaAATTACATTAAAAAATACCGTT
TAAGCAAGTGATACGCTAGTGTAGAGAAAATACAAAGATACTCCTTAAAC
TTTATAAAAGAAATTACGTTTAGTTTAAGTATCTAtactaaaattttaaa
aaatgtttgtttacaattCAACACGTTTTNTACGTTAGTGTAGAGAAAAT
ACAAAGATACTTCTTAAACTTTATAAAAGAAATTACGTTTAGTTTAAGTA
TAACTATActaaaatgtttgtttacaattCGACACGGTTCCCTTCTGTGG
AGTAGTCTTCACATTTTGTGCATTCTTCATCTTGACATTTTGTGAAAGGT
GGGCATTTGGGTGCATCTCCTCCTCTCGAACATCGAACAATCTTGGCATC
CCATGCCAAATCATTCTTCTGCACGTCTGTGGTGGTCACATACAGTTGCC
ACATGCAGCCTCCTTTCCACGGGTTTCCGTTTTCATAATAATCACACGAA
AACGAGGTTTTGGTCGTCTGCTCATGCGTGCTGCTCCACGTGTAGGCAAC
AGATGCAGCCACGCTGGCGGAAACtgtcattttttcaaagatgaGATTTG
ATTCTATGGCCATTTCGACTCCCACAGAAACTTGAGTTGTAACTTCGTTA
GTATAGGAGACGGTGTTGTCGATTTCGTAGGTTACTGCGCCGTCTAAATT
GCAGGAGATTTGGCTCCATTGNGGCAACAGATGTAGCCACGCTGGTGGAT
ACTTTCATGTCAACAAAGATGAGATTTGCTTCGATGGCCATTTCGACTGT
CACAGAAACTTGACTTGTAACTTCGTTGGTATAGGAGACGGTGTTGTCGA
TTTCGTATGTTACTGCGCCGTCTAAATTGCAGGAGATTTGGCGCCATTGT
GAAGTCGGGGAGACCCAGTCTTCCGTAACCCATTCGAACCGTTGGTCTGG
AACACCTTGGCATTGATACAAGTCGATGTCACCGGTCCCATCATTGCCTT
CTACATCCAAGCATTTGCTGGTCTGCTTGCTCATGAATGCTAGGTAGTTA
CCATCTGCATATTGCGATGGTGTTGACCACATTTGATCCGTTTGCTCAGC
ACACTCATATGTTTGTACGCTTTCAGCAGACTCACCGGTACCATCTGGAT
CCATACACGTGTTTGATGCCATGTTCAAAACCTCGCCGTTCTCGTAATGC
GTCCAGTATTGCTTTCGGCTATCAGTGCATGGTGTGGTGTATATGTTTGA
TTTCCAACCAGTGTTATCAGCTGTCGCACACTGTCctgatttctgatttc
tcaACCGTCCAGAATTGACTACTTTCCCTCGGTTGCGGAAGTAGAAAAAT
TGGTCATCGCTATTCTGGCAATTATAGATAGCGATATTACCGTGGCCCCC
TGAAGCATTGACGTCGACACAAAGGTTGGATTTGACGTTCTTGTACTCGT
AACCAGTCTGTTTTATTCCACTGGCGTCAGTGTAGGGTCGACACAAAGGT
TGGATTTGACGTTCTTGTACTCGTAACCAGTCTGTTTTATTCCACTGGCG
TCAGTGTAGGATCGACTTCcaccagttttgaatttttgataatCAGGAAC
AGATGGGTAAAGTTCACAAGGTTGAAATGTCAAATCTCCAGTGCCAGCTC
CAGTATTGCTTGGTGTTAAACAGTAATTTTTGGCCATGTTTCTGATCGTG
CCATCATTGCAAGCAATGATTTGCTGGTCTGGTTTTCCGTCACATGTGTA
AGTCTGGACATGTCCGCTGCCATCATTGTCACTGTCCATGCATTTGTGAG
ACAGCAAATTGCGCAATTCTCCAGTGCGCAATGCAGACGGGCAATTAGCA
TCGCCGTGCGCCAAATAAATGGCTGAAGCGAGAATCATGAAGACTGCAAA
CATTTTGATGTGTTTGTAGTGAGTGGTGTTGTTAACgcctttttttagat
ttttatacaGTCCTCACGGAGAACTGGTTTGCTACGCTCCATTAATTTTT
TGGGAGTATTTCAGACATCGTGGTCAAACGACCTGCCGCAACAGACAATC
GTTATTACAGCTTAATTAAACCCTCGTTTGACCAAGGATCAGACTTGATT
GGTTTACCGTGTGCAGACTTATTGTGATGAATACACTTTAATAATCTAAT

Run BLAST on NCBI

transcript from alignment at sc0001298:13038..18489-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035342 ID=TCONS_00035342|Name=TCONS_00035342|organism=Clytia hemisphaerica|type=transcript|length=5452bp|location=Sequence derived from alignment at sc0001298:13038..18489- (Clytia hemisphaerica)
TACTAGGGCAAGATGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTT
TTTAACCTCCACGAGTCCCAGGTAGGGTCGCAAAAACACCAAAACAGAAA
AATCAGTCCCTCGTAGGGTGCCTTTCTTTGGAAAATTTGGGGAAAAAGCG
GGAAAAAGTAGAAAATTTAGAAAATTTTGGAATTTCAGTCCCATTCAGGG
TCACTTTTTTCGCAAATTTCGAGTCCCACGTAGGGTCCATTTTTCGAATC
TCAGCGGAGCACCCCCGTCGGTCGACAAGGGTAGTACCCCCCCGGGNTTT
CTTTACAGAAATATTAACCATCTGTGAAAAATGTCTTTTAATCAAATAGT
GCACATGCTGTTAAATGTAAGAAATAATACAATATCAAAAGCAAAGTTTC
TAATTTTCCTATTTCAAAATTTCAACCTATTACAAAATTACAATACTCCG
AAAATGGTTGAAATATAGTATGCCTAAAATTGAATGTTACTTCTAGGTAA
GAAAGATAATGATCCTATAAGAAGCAAATATTGACTCATCAGACCTTTTG
AGTTCAAAAAGAAATTCTTGTCTTGGCTTTGGAAAAAGAAAACTTTCGGA
TGAGGTGGTTAAGAAAATAAAAATGTGAAANGACTTGTCACGAAATCTTG
AAACAAGCTTTCATACGAACTCTATGTCAAAGTGTGTAAAACATTACATT
AAAAAATACCGTTTAAGCAAGTGATACGCTAGTGTAGAGAAAATACAAAG
ATACTCCTTAAACTTTATAAAAGAAATTACGTTTAGTTTAAGTATCTATA
CTAAAATTTTAAAAAATGTTTGTTTACAATTCAACACGTTTTNTACGTTA
GTGTAGAGAAAATACAAAGATACTTCTTAAACTTTATAAAAGAAATTACG
TTTAGTTTAAGTATAACTATACTAAAATGTTTGTTTACAATTCGACACGG
TTCCCTTCTGTGGAGTAGTCTTCACATTTTGTGCATTCTTCATCTTGACA
TTTTGTGAAAGGTGGGCATTTGGGTGCATCTCCTCCTCTCGAACATCGAA
CAATCTTGGCATCCCATGCCAAATCATTCTTCTGCACGTCTGTGGTGGTC
ACATACAGTTGCCACATGCAGCCTCCTTTCCACGGGTTTCCGTTTTCATA
ATAATCACACGAAAACGAGGTTTTGGTCGTCTGCTCATGCGTGCTGCTCC
ACGTGTAGGCAACAGATGCAGCCACGCTGGCGGAAACTGTCATTTTTTCA
AAGATGAGATTTGATTCTATGGCCATTTCGACTCCCACAGAAACTTGAGT
TGTAACTTCGTTAGTATAGGAGACGGTGTTGTCGATTTCGTAGGTTACTG
CGCCGTCTAAATTGCAGGAGATTTGGCTCCATTGNGGCAACAGATGTAGC
CACGCTGGTGGATACTTTCATGTCAACAAAGATGAGATTTGCTTCGATGG
CCATTTCGACTGTCACAGAAACTTGACTTGTAACTTCGTTGGTATAGGAG
ACGGTGTTGTCGATTTCGTATGTTACTGCGCCGTCTAAATTGCAGGAGAT
TTGGCGCCATTGTGAAGTCGGGGAGACCCAGTCTTCCGTAACCCATTCGA
ACCGTTGGTCTGGAACACCTTGGCATTGATACAAGTCGATGTCACCGGTC
CCATCATTGCCTTCTACATCCAAGCATTTGCTGGTCTGCTTGCTCATGAA
TGCTAGGTAGTTACCATCTGCATATTGCGATGGTGTTGACCACATTTGAT
CCGTTTGCTCAGCACACTCATATGTTTGTACGCTTTCAGCAGACTCACCG
GTACCATCTGGATCCATACACGTGTTTGATGCCATGTTCAAAACCTCGCC
GTTCTCGTAATGCGTCCAGTATTGCTTTCGGCTATCAGTGCATGGTGTGG
TGTATATGTTTGATTTCCAACCAGTGTTATCAGCTGTCGCACACTGTCCT
GATTTCTGATTTCTCAACCGTCCAGAATTGACTACTTTCCCTCGGTTGCG
GAAGTAGAAAAATTGGTCATCGCTATTCTGGCAATTATAGATAGCGATAT
TACCGTGGCCCCCTGAAGCATTGACGTCGACACAAAGGTTGGATTTGACG
TTCTTGTACTCGTAACCAGTCTGTTTTATTCCACTGGCGTCAGTGTAGGA
TCGACTTCCACCAGTTTTGAATTTTTGATAATCAGGAACAGATGGGTAAA
GTTCACAAGGTTGAAATGTCAAATCTCCAGTGCCAGCTCCAGTATTGCTT
GGTGTTAAACAGTAGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACGTCGACACAAAG
GTTGGATTTGACGTTCTTGTACTCGTAACCAGTCTGTTTTATTCCACTGG
CGTCAGTGTAGGATCGACTTCCACCAGTTTTGAATTTTTGATAATCAGGA
ACAGATGGGTAAAGTTCACAAGGTTGAAATGTCAAATCTCCAGTGCCAGC
TCCAGTATTGCTTGGTGTTAAACAGTAATTTTTGGCCATGTTTCTGATCG
TGCCATCATTGCAAGCAATGATTTGCTGGTCTGGTTTTCCGTCACATGTG
TAAGTCTGGACATGTCCGCTGCCATCATTGTCACTGTCCATGCATTTGTG
AGACAGCAAATTGCGCAATTCTCCAGTGCGCAATGCAGACGGGCAATTAG
CATCGCCGTGCGCCAAATAAATGGCTGAAGCGAGAATCATGAAGACTGCA
AACATTTTGATGTGTTTGTAGTGAGTGGTGTTGTTAACGCCTTTTTTTAG
ATTTTTATACAGTCCTCACGGAGAACTGGTTTGCTACGCTCCATTAATTT
TTTGGGAGTATTTCAGACATCGTGGTCAAACGACCTGCCGCAACAGACAA
TCGTTATTACAGCTTAATTAAACCCTCGTTTGACCAAGGATCAGACTTGA
TTGGTTTACCGTGTGCAGACTTATTGTGATGAATACACTTTAATAATCTA
AT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020637	XLOC_020637	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035342-exon-sc0001298-1575043694:17861..18489	TCONS_00035342-exon-sc0001298-1575043694:17861..18489	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1575043694:16341..17797	TCONS_00035342-exon-sc0001298-1575043694:16341..17797	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1575043694:13038..13701	TCONS_00035342-exon-sc0001298-1575043694:13038..13701	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1510915933:17861..18489	TCONS_00035342-exon-sc0001298-1510915933:17861..18489	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1510915933:16341..17797	TCONS_00035342-exon-sc0001298-1510915933:16341..17797	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1510915933:13038..13701	TCONS_00035342-exon-sc0001298-1510915933:13038..13701	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1491911889:17861..18489	TCONS_00035342-exon-sc0001298-1491911889:17861..18489	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1491911889:16341..17797	TCONS_00035342-exon-sc0001298-1491911889:16341..17797	Clytia hemisphaerica	exon
TCONS_00035342-exon-sc0001298-1491911889:13038..13701	TCONS_00035342-exon-sc0001298-1491911889:13038..13701	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001298	supercontig	sc0001298:13038..18489 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138866	0.109942	0.122947	0.0429768	1.28652	1.83104	0.944124	2.57756	5.82492	5.17986	3.30963	2.81751	1.28142	2.2799	2.14425	0.886173	5.51956	6.27086	1.59564	3.71377	0.14631	0.0896836	0.118088	0.133835	0.223155	0.261418	0.0756979	0	0.109833	0.0406288

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00035342 vs. Swiss-Prot (Human)

BLAST of TCONS_00035342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00035342 (transcript) - C. hemisphaerica