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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035323 ID=TCONS_00035323|Name=TCONS_00035323|organism=Clytia hemisphaerica|type=transcript|length=1863bp
tccctatatatttcattttttcaataattttttttaacaaaaattgaaTA
GACTTGTTCGTCGGTTTCGTTTTTAATCCACGTTGtacaaaaatagattt
taatcaaattttgtgTATATACTGTAATATAATAGTAATATAACACTGGG
AAAATTACCAAGaagaaataactttttcatacacaataaattgaaaatta
aaattaaaaggggaaaaatactaaaaatatattaaaacaTCGGTAAGGTT
TCAAAATCCGCCTTctgatatgaaaaaaaaaaattctttccagatttttg
ttttctattttgcaTAGAATGCTGAAAACAttgatttcttcttttaaaat
ttatcttatATTCTATTCCTATTATTTTCCCTAAAAAGTAACTATAGGTC
TTATTTTCTTAAATAGCAGGGAAACAGAGGAAAATCAATCATGTTATTTT
GTGATCAATTACCATCTGGTTTTCTTGAAATCTCAGTCACTAACCCTTAT
TTAATTTTCCGgttaaaaatctgcaaaatcagCATTTTCCTCTTCTTTGA
TTCCTTCGTGATGACTTTGCGatgattcataaaaaaatcttttatataat
aaagcgagagagagagagagagtaaaATTAGGTTTCTAGTCTTCATCATC
GACTTCGTCATTTTATTCTCtattttccaaataaaaaaaaacatgcgtAA
CTAATTGTATACATATAGAAAAGTTGTCTAAAATACAAAAGAactaaaag
aaattaaaatgtaaaaacaaatcatctaaaaattatattataagTCAATA
TCATCTTTAAGTGCCGTAACAGCTTTTCTGAATTTCTTCCTTAATACCTG
CCAGCTCGAAGTCTTTGGTACTTTATAAGTGTGTACATCTACTAAGTCTG
TAGCCCATCTAACCTTTTTATCATACGAGTTCAAGAGTTCAGTTGTTGTG
TTCAGAGTCTTCAGTAAGATTTTATCTGTAAAGCTGGTAccattttttgg
taaaatatgtTTAACCAAAGATCGTTGAGTGTCAATGACAAACTGTTGAT
GATGCTGTTGATGTTGGTGATGATATTGTTGccgttgttgttgctgttgc
tgAAAATTGTGTTGATTGTGATAATTTTGATGCCTTGAAGTTGATCTTCG
TGGATAAGTATAGTTTTCATGTTGATAATAATCGGAAAAGTTTTCTTGAT
ATTCTATATCATCTTCGTTGTAATGATATTGCTGATGCAGATGATTTGGA
CTTGTTTCGTATATGTATTTGTGATGATGTTGTCGAGGATGACGATGCAA
ATCTGTAAGGCTCATTTTCTCGCTCTTTATTTCTGTActaatgttttgaa
attgttctCTTTGTTATATTTGTGTGCTGTGAGATAAATTCTTCTTTCTT
CAGACTCTTCCTTTTTGGATATTCTTGGTCCTCTACTTCGTTCTTTGTTT
TGGAGTTGGTATCAAGATTTCACAAGCTCAAAACGCTCTCACGTTTTTAA
AGTAGAGAATCTTTGATGTTAACGTTACTAACCAATCAAGTTTTATATAC
ACAAATAAGCGGTAAACGAAGCATGAAATTGATTACAATCTTTTATCTTC
CTCCTCTTCTTCTGTGTCTTCGTTGCCCACACACTCTTGACGTTGTTGTC
TTCACTcaaactttcgttgacgtcttCGCACCAAAGATTTTGTGTATTCA
AAAATCTGAGAGCGTTTTAATTTTTATACTAGTAGAGAGAATTACGAATG
GTCGAATGACTGGTCTCCATTCGAGCGAAAAATAAGTGATTTCTTTCCCT
CTGGCTTCTCTTTataactctctctctctctctatctCGCGTCATTGATT
ATATATGTCTTTT Run BLAST on NCBI protein sequence of TCONS_00035323-protein >TCONS_00035323-protein ID=TCONS_00035323-protein|Name=TCONS_00035323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MSLTDLHRHPRQHHHKYIYETSPNHLHQQYHYNEDDIEYQENFSDYYQHE
NYTYPRRSTSRHQNYHNQHNFQQQQQQRQQYHHQHQQHHQQFVIDTQRSL
VKHILPKNGTSFTDKILLKTLNTTTELLNSYDKKVRWATDLVDVHTYKVP
KTSSWQVLRKKFRKAVTALKDDIDL Run BLAST on NCBI transcript from alignment at sc0001297:26597..28459 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035323 ID=TCONS_00035323|Name=TCONS_00035323|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at sc0001297:26597..28459 (Clytia hemisphaerica)
AAAAGACATATATAATCAATGACGCGagatagagagagagagagagttat
AAAGAGAAGCCAGAGGGAAAGAAATCACTTATTTTTCGCTCGAATGGAGA
CCAGTCATTCGACCATTCGTAATTCTCTCTACTAGTATAAAAATTAAAAC
GCTCTCAGATTTTTGAATACACAAAATCTTTGGTGCGaagacgtcaacga
aagtttgAGTGAAGACAACAACGTCAAGAGTGTGTGGGCAACGAAGACAC
AGAAGAAGAGGAGGAAGATAAAAGATTGTAATCAATTTCATGCTTCGTTT
ACCGCTTATTTGTGTATATAAAACTTGATTGGTTAGTAACGTTAACATCA
AAGATTCTCTACTTTAAAAACGTGAGAGCGTTTTGAGCTTGTGAAATCTT
GATACCAACTCCAAAACAAAGAACGAAGTAGAGGACCAAGAATATCCAAA
AAGGAAGAGTCTGAAGAAAGAAGAATTTATCTCACAGCACACAAATATAA
CAAAGagaacaatttcaaaacattagTACAGAAATAAAGAGCGAGAAAAT
GAGCCTTACAGATTTGCATCGTCATCCTCGACAACATCATCACAAATACA
TATACGAAACAAGTCCAAATCATCTGCATCAGCAATATCATTACAACGAA
GATGATATAGAATATCAAGAAAACTTTTCCGATTATTATCAACATGAAAA
CTATACTTATCCACGAAGATCAACTTCAAGGCATCAAAATTATCACAATC
AACACAATTTTcagcaacagcaacaacaacggCAACAATATCATCACCAA
CATCAACAGCATCATCAACAGTTTGTCATTGACACTCAACGATCTTTGGT
TAAacatattttaccaaaaaatggTACCAGCTTTACAGATAAAATCTTAC
TGAAGACTCTGAACACAACAACTGAACTCTTGAACTCGTATGATAAAAAG
GTTAGATGGGCTACAGACTTAGTAGATGTACACACTTATAAAGTACCAAA
GACTTCGAGCTGGCAGGTATTAAGGAAGAAATTCAGAAAAGCTGTTACGG
CACTTAAAGATGATATTGActtataatataatttttagatgatttgtttt
tacattttaatttcttttagtTCTTTTGTATTTTAGACAACTTTTCTATA
TGTATACAATTAGTTacgcatgtttttttttatttggaaaataGAGAATA
AAATGACGAAGTCGATGATGAAGACTAGAAACCTAATtttactctctctc
tctctctcgctttattatataaaagatttttttatgaatcatCGCAAAGT
CATCACGAAGGAATCAAAGAAGAGGAAAATGctgattttgcagattttta
acCGGAAAATTAAATAAGGGTTAGTGACTGAGATTTCAAGAAAACCAGAT
GGTAATTGATCACAAAATAACATGATTGATTTTCCTCTGTTTCCCTGCTA
TTTAAGAAAATAAGACCTATAGTTACTTTTTAGGGAAAATAATAGGAATA
GAATataagataaattttaaaagaagaaatcaaTGTTTTCAGCATTCTAt
gcaaaatagaaaacaaaaatctggaaagaatttttttttttcatatcagA
AGGCGGATTTTGAAACCTTACCGAtgttttaatatatttttagtattttt
ccccttttaattttaattttcaatttattgtgtatgaaaaagttatttct
tCTTGGTAATTTTCCCAGTGTTATATTACTATTATATTACAGTATATAca
caaaatttgattaaaatctatttttgtaCAACGTGGATTAAAAACGAAAC
CGACGAACAAGTCTAttcaatttttgttaaaaaaaattattgaaaaaatg
aaatatataggga Coding sequence (CDS) from alignment at sc0001297:26597..28459 >TCONS_00035323 ID=TCONS_00035323|Name=TCONS_00035323|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0001297:26597..28459 (Clytia hemisphaerica)
ATGAGCCTTACAGATTTGCATCGTCATCCTCGACAACATCATCACAAATA
CATATACGAAACAAGTCCAAATCATCTGCATCAGCAATATCATTACAACG
AAGATGATATAGAATATCAAGAAAACTTTTCCGATTATTATCAACATGAA
AACTATACTTATCCACGAAGATCAACTTCAAGGCATCAAAATTATCACAA
TCAACACAATTTTcagcaacagcaacaacaacggCAACAATATCATCACC
AACATCAACAGCATCATCAACAGTTTGTCATTGACACTCAACGATCTTTG
GTTAAacatattttaccaaaaaatggTACCAGCTTTACAGATAAAATCTT
ACTGAAGACTCTGAACACAACAACTGAACTCTTGAACTCGTATGATAAAA
AGGTTAGATGGGCTACAGACTTAGTAGATGTACACACTTATAAAGTACCA
AAGACTTCGAGCTGGCAGGTATTAAGGAAGAAATTCAGAAAAGCTGTTAC
GGCACTTAAAGATGATATTGActtataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035323-exon-sc0001297-1491911889:26597..28459 | TCONS_00035323-exon-sc0001297-1491911889:26597..28459 | Clytia hemisphaerica | exon |
| TCONS_00035323-exon-sc0001297-1510915933:26597..28459 | TCONS_00035323-exon-sc0001297-1510915933:26597..28459 | Clytia hemisphaerica | exon |
| TCONS_00035323-exon-sc0001297-1575043694:26597..28459 | TCONS_00035323-exon-sc0001297-1575043694:26597..28459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001297 | supercontig | sc0001297:26597..28459 . |
Blast
The following BLAST results are available for this feature:
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