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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035291 ID=TCONS_00035291|Name=TCONS_00035291|organism=Clytia hemisphaerica|type=transcript|length=2224bpRun BLAST on NCBI protein sequence of TCONS_00035291-protein >TCONS_00035291-protein ID=TCONS_00035291-protein|Name=TCONS_00035291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp MMSDQTNQQIINEKTTIPSTQSSGQTPVFATPSPSALPVTVSLNTSSCSMRun BLAST on NCBI transcript from alignment at sc0001287:14949..35020+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035291 ID=TCONS_00035291|Name=TCONS_00035291|organism=Clytia hemisphaerica|type=transcript|length=20072bp|location=Sequence derived from alignment at sc0001287:14949..35020+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001287:14949..35020+ >TCONS_00035291 ID=TCONS_00035291|Name=TCONS_00035291|organism=Clytia hemisphaerica|type=CDS|length=20007bp|location=Sequence derived from alignment at sc0001287:14949..35020+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035291 vs. Swiss-Prot (Human)
Match: MCRS1 (Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 2.485e-86 Identity = 147/323 (45.51%), Postives = 206/323 (63.78%), Query Frame = 2
Query: 626 VPVDFGRWRPTDDLALIVAVSQTCDLQSVFLGIRFSCHFTLKEVQDRWFALLYDPLVSKLAQQSIKALPAEVVEKVTVKSALWSKDEDQLLADISQEDNYDLNDFQTLLDENPTTFHRSRTAAILEDHWKLLRHYHLLSSQLAKNI--NSTVCTLQDMENRLVDDQINRSEDDELNQELSFTDRAHKREIRRLEQEIPQWEVMLEKSGYIEDLEVSTFPEDTLAVLKGRILKFHIVKETTYIGRRNLDFDIDVDLSVEGPALKISRRQGVLKLV-NGRFHLENCGRRPFYINGQPLASGASTTLMNNSVIEIYCTKLLFNVNQ 1585
V D GRW+P DDL LI AV QT DL SV LG++FSC FTL+EVQ+RW+ALLYDP++SKLA Q+++ L E + + K AL+SK E+QLL+ + L FQ LL +P F+ +RTA L+ HW+L++ Y+LL Q + + V D E+ + D ++ D+ L EL DR KREIR+LEQE+ +W+V+++ I + F TLAVL+GR++++ + +GR D IDVDLS+EGPA KISR+QGV+KL NG F + N GRRP YI+G+P+ G+ L NNSV+EI + +F +NQ
Sbjct: 128 VTKDLGRWKPADDLLLINAVLQTNDLTSVHLGVKFSCRFTLREVQERWYALLYDPVISKLACQAMRQLHPEAIAAIQSK-ALFSKAEEQLLSKVGSTSQPTLETFQDLLHRHPDAFYLARTAKALQAHWQLMKQYYLLEDQTVQPLPKGDQVLNFSDAEDLIDDSKLKDMRDEVLEHELMVADRRQKREIRQLEQELHKWQVLVDS---ITGMSSPDFDNQTLAVLRGRMVRYLMRSREITLGRATKDNQIDVDLSLEGPAWKISRKQGVIKLKNNGDFFIANEGRRPIYIDGRPVLCGSKWRLSNNSVVEIASLRFVFLINQ 446 The following BLAST results are available for this feature:
BLAST of TCONS_00035291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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