TCONS_00035290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035290
Unique NameTCONS_00035290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035290 ID=TCONS_00035290|Name=TCONS_00035290|organism=Clytia hemisphaerica|type=transcript|length=1351bp
GACCTTTAATAAATCTTtgggaaaattttattttccatttctcTAGATGC
CCCTATTGCCTTATTCATTATttcattcttaactttttttgtagaaagca
caataaaaaaaaagtttttttaaaccaacaataaataaaaaacatctaTC
AACAATGGATTTGAGTAAAACACCAGATGCAGAGAAAGTGAGACTTTCAA
GAATATACTTCCGTGGTGGTTTTGCATTTTTACCGTTTTTATGGTTTATC
AATACAATTTGGTTTTTCAAAGTGGCTTTTTTTAATGAGCAATTTGAAGG
ACAAAATGAGATCAAGAAGAACGTTATACGGTCTGGAATAGGTGCACTAG
TATGGATAATTGGCATTGCTGTCTGGGTTGTGATTTATCGTACCAACAGA
GCTTCATGGGGAGCAACTggagatgctatatcttttttAATACCTCTTGG
AGAGCCTTAAATAATAATTAAATGAATGTTCTATGTTATTTTGTACATAG
TCGATAATTTCTATATTATTCGATTTGTAAATTTAAGATTAGAAGCCTTT
ATTTTGTAAGTTTTAACAAAGTTCAATAGTCTCAATACTTCGTTAAAGAT
AGGTGTATTTTGATTATCATACTGCTCACATATTAAATGGTCTAGAGGGT
ACCTTAACCCTAACAATTTTCACATTCTTTTTGTGCACAAAACCTGACCA
AAAATTTAAGACGTGTAAAAAAGGCATATTTTCACACACTTGACTGTGTC
AAATTTAAATGGTGCGTCAATTATTGATCATCATAACGTGGGAATATCAT
AATAGTGTCCCCTTTAAAGAAACATGTCTTTTTTGCCCTCTTTACCTAAA
TTCATCAAAACATATCCTAGAAATTACAAGAtacacaaaaataaaatatt
atattccccaaaaattgcccaaaaatttaaggcacaaaaattaatttttg
taaataaaaggcaTGGGAAAGTTAAGGTATTAAGGTATGTTAGATTTTCC
AATTATTTTGGAAAATGAGTCTGTTGTATTTCATTAgcttttgtttatat
tttgtttttataattcTATTTTGATGCAATCTACACAAATCTACCGAAAT
AGAAATGATATAATTTATCGTAAATTTAAGATGTATCAAAGTATCCAAAG
ATTATGTTCATTATTAAGAGCCAGTGATTGATCATTTTATGCAGTTAGcc
tgattgaagtttttcatgcagttagcctgattgaagtttttcatgcTCAG
CTATTCTATTGACTAAAtcatctttaaaaattttctgaaatttctagtTC
CTTTAAAAACTAtatccaaaaataaaatttggatgaaaaatatTGTTCAA
G
Run BLAST on NCBI

protein sequence of TCONS_00035290-protein

>TCONS_00035290-protein ID=TCONS_00035290-protein|Name=TCONS_00035290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MDLSKTPDAEKVRLSRIYFRGGFAFLPFLWFINTIWFFKVAFFNEQFEGQ
NEIKKNVIRSGIGALVWIIGIAVWVVIYRTNRASWGATGDAISFLIPLGE
P
Run BLAST on NCBI

transcript from alignment at sc0001287:10247..11805+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035290 ID=TCONS_00035290|Name=TCONS_00035290|organism=Clytia hemisphaerica|type=transcript|length=1559bp|location=Sequence derived from alignment at sc0001287:10247..11805+ (Clytia hemisphaerica)
GACCTTTAATAAATCTTtgggaaaattttattttccatttctcTAGATGC
CCCTATTGCCTTATTCATTATttcattcttaactttttttgtagaaagca
caataaaaaaaaagtttttttaaaccaacaataaataaaaaacatctaTC
AACAATGGATTTGAGTAAAACACCAGATGCAGAGAAAGTGAGACTTTCAA
GAATATACTTCCGTGGTGGTTTTGCATTTTTACCGTTTTTATGGTTTATC
AATACAATTTGGTTTTTCAAAGTGGCTTTTTTTAATGAGCAATTTGAAGG
ACAAAATGAGATCAAGAAGAACGTTATACGGTCTGGAATAGGTGCACTAG
TATGGATAATTGGCATTGCTGTCTGGGTTGTGATTTATCGTACCAACAGA
GCTTCATGGGGAGCAACTggagatgctatatcttttttAATACCTCTTGG
AGAGCCTTAAATAATAATTAAATGAATGTTCTATGTTATTTTGTACATAG
TCGATAATTTCTATATTATTCGATTTGTAAATTTAAGAttacaggcccgg
cggaagcggggaggcTGGGGAGGCTGAAGCCCctccacttttgagcaaaa
tagACTTTTTTCTCCAATTCATGGCAAATTCTACCTCATTAGATCCTTTA
GCCCCTCCGCTTTtatggttgttccgccgggcctgNTTCTATGTTATTTT
GTACATAGTCGATAATTTCTATATTATTCGATTTGTAAATTTAAGATTAG
AAGCCTTTATTTTGTAAGTTTTAACAAAGTTCAATAGTCTCAATACTTCG
TTAAAGATAGGTGTATTTTGATTATCATACTGCTCACATATTAAATGGTC
TAGAGGGTACCTTAACCCTAACAATTTTCACATTCTTTTTGTGCACAAAA
CCTGACCAAAAATTTAAGACGTGTAAAAAAGGCATATTTTCACACACTTG
ACTGTGTCAAATTTAAATGGTGCGTCAATTATTGATCATCATAACGTGGG
AATATCATAATAGTGTCCCCTTTAAAGAAACATGTCTTTTTTGCCCTCTT
TACCTAAATTCATCAAAACATATCCTAGAAATTACAAGAtacacaaaaat
aaaatattatattccccaaaaattgcccaaaaatttaaggcacaaaaatt
aatttttgtaaataaaaggcaTGGGAAAGTTAAGGTATTAAGGTATGTTA
GATTTTCCAATTATTTTGGAAAATGAGTCTGTTGTATTTCATTAgctttt
gtttatattttgtttttataattcTATTTTGATGCAATCTACACAAATCT
ACCGAAATAGAAATGATATAATTTATCGTAAATTTAAGATGTATCAAAGT
ATCCAAAGATTATGTTCATTATTAAGAGCCAGTGATTGATCATTTTATGC
AGTTAGcctgattgaagtttttcatgcagttagcctgattgaagtttttc
atgcTCAGCTATTCTATTGACTAAAtcatctttaaaaattttctgaaatt
tctagtTCCTTTAAAAACTAtatccaaaaataaaatttggatgaaaaata
tTGTTCAAG

Coding sequence (CDS) from alignment at sc0001287:10247..11805+

>TCONS_00035290 ID=TCONS_00035290|Name=TCONS_00035290|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0001287:10247..11805+ (Clytia hemisphaerica)
ATGGATTTGAGTAAAACACCAGATGCAGAGAAAGTGAGACTTTCAAGAAT
ATACTTCCGTGGTGGTTTTGCATTTTTACCGTTTTTATGGTTTATCAATA
CAATTTGGTTTTTCAAAGTGGCTTTTTTTAATGAGCAATTTGAAGGACAA
AATGAGATCAAGAAGAACGTTATACGGTCTGGAATAGGTGCACTAGTATG
GATAATTGGCATTGCTGTCTGGGTTGTGATTTATCGTACCAACAGAGCTT
CATGGGGAGCAACTggagatgctatatcttttttAATACCTCTTGGAGAG
CCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020601XLOC_020601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035290-proteinTCONS_00035290-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035290-exon-sc0001287-1491911889:10247..10742TCONS_00035290-exon-sc0001287-1491911889:10247..10742Clytia hemisphaericaexon
TCONS_00035290-exon-sc0001287-1510915933:10247..10742TCONS_00035290-exon-sc0001287-1510915933:10247..10742Clytia hemisphaericaexon
TCONS_00035290-exon-sc0001287-1575043694:10247..10742TCONS_00035290-exon-sc0001287-1575043694:10247..10742Clytia hemisphaericaexon
TCONS_00035290-exon-sc0001287-1491911889:10951..11805TCONS_00035290-exon-sc0001287-1491911889:10951..11805Clytia hemisphaericaexon
TCONS_00035290-exon-sc0001287-1510915933:10951..11805TCONS_00035290-exon-sc0001287-1510915933:10951..11805Clytia hemisphaericaexon
TCONS_00035290-exon-sc0001287-1575043694:10951..11805TCONS_00035290-exon-sc0001287-1575043694:10951..11805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001287supercontigsc0001287:10247..11805 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
44.986	45.5264	21.586	20.0061	12.5082	8.38729	14.4129	14.2361	13.7381	12.0781	9.16936	8.44945	8.82275	7.38142	12.9459	12.979	17.6288	15.9268	11.5079	11.9564	17.6462	15.266	25.886	27.7809	7.75249	9.52342	15.5139	13.7802	20.3668	20.34
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019379Gamma_Secretase_Asp_P_PEN2
Blast
[Close]
BLAST of TCONS_00035290 vs. Swiss-Prot (Human)
Match: PEN2 (Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=PSENEN PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.937e-22
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 2 
Query:  155 MDLSKTPDAEKVRLSRIYFRGGFAFLPFLWFINTIWFFKVAFFNEQFEGQNEIKKNVIRSGIGALXXXXXXXXXXXXYRTNRASWGATGDAISFLIPLGEP 457
            M+L +  + EK+ L R Y+ GGFAFLPFLW +N  WFF+ AF    +  Q++IK  V RS +G L W+I +  W+ I++  R  WGA GD +SF IPLG P
Sbjct:    1 MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRSAVGFLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLGTP 101
The following BLAST results are available for this feature:
BLAST of TCONS_00035290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEN27.937e-2247.52Gamma-secretase subunit PEN-2 OS=Homo sapiens GN=P... [more]
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