TCONS_00035259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035259
Unique NameTCONS_00035259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035259 ID=TCONS_00035259|Name=TCONS_00035259|organism=Clytia hemisphaerica|type=transcript|length=1003bp
CATTATCAACATTATGATTATGATTATgCAATCGACGACACAAACGAAAG
AGATAGAAAAGAGCACGCAAAAAGCTGAAGAAATCTGCTAAACCATCAAA
CATGAAAAAAGTAAtacttttcattcaaattttgctgGTACTTGGCTCAA
CCAGTTCAACCGATGTCGCAAATGAAGATGCAGCTTTAGACACGAAAAGC
AGTCCAAAAAAAACCCTCGCTCAATCGTCCCCTTCTACTTGTCAGCCTTG
TCGAAAGGGTCGAGACGGTCGTGATGGCTTGAACGGGCTACCTGGACGAG
ATGGGGAAGATGGATGCCAGGGACAAGCCGGCAGAGATGGACTACCTGGC
GCCAGAGGGCCAGAAGGTGTTCAAGGTATACAAGGCCGTCCTGGGTCAAA
TGGAACCAAAGGAGACCAAGGTGTTCCTGGAAAAGATGGCAATAACGGTA
TCAATGGAGTTCCTGGGGTAAATGGAACAAAGGGCGAGCAAGGCCCACCT
GGAAAAGatggTTCAATTGGTGGCAGACACTTTAAAGAATGTGCCTGGAG
ATTTACATCAAGTACAGATACTGGCTTGCTTAAGGATTGCaagctcaata
aatcaaagACCGACTCGTACTTAATGGTGTCAATCTCTTCAAATATATAT
CAAGGAAAGGCTCAAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAA
AGAATGTTCTCCTCACCCAATAGAACATGCGTATTACAGAGGCACTACGA
GTAATGCGAATGGTGATCACATCCCGTTCACAATGAACGGTGTTTGCAAA
ATCAACAAATCAGGCGTTGTGAGCGTTGGATTCAACGTTGGGAAATGTTC
AGGTTTTGATTCGCTCGGTGATGCTTACACAGGATTCAATACAGTGACAC
GTATCGTTGTTGAAGAGCTGTAaacacaaaatatttaattcaaTTTCTTA
AATTAGAGACGTATAATGCATAATGTAGAAAATGGctgaaataatatttt
tac
Run BLAST on NCBI

protein sequence of TCONS_00035259-protein

>TCONS_00035259-protein ID=TCONS_00035259-protein|Name=TCONS_00035259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MKKVILFIQILLVLGSTSSTDVANEDAALDTKSSPKKTLAQSSPSTCQPC
RKGRDGRDGLNGLPGRDGEDGCQGQAGRDGLPGARGPEGVQGIQGRPGSN
GTKGDQGVPGKDGNNGINGVPGVNGTKGEQGPPGKDGSIGGRHFKECAWR
FTSSTDTGLLKDCKLNKSKTDSYLMVSISSNIYQGKAQACSRWFVTFDGK
ECSPHPIEHAYYRGTTSNANGDHIPFTMNGVCKINKSGVVSVGFNVGKCS
GFDSLGDAYTGFNTVTRIVVEEL
Run BLAST on NCBI

transcript from alignment at sc0001279:1580..13701+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035259 ID=TCONS_00035259|Name=TCONS_00035259|organism=Clytia hemisphaerica|type=transcript|length=12122bp|location=Sequence derived from alignment at sc0001279:1580..13701+ (Clytia hemisphaerica)
CATTATCAACATTATGATTATGATTATgtaagttagtttttttcataatt
ttacggtcgtaattattcgtagttccattAGTTACTCATTTCtcttttgt
tgcataaatttaccgtggtaaacaaaagcgagaaaagattatgcaattgt
tttagaattatgttatataatttaagttttatgataattattaggaataa
tcagcatactttatgcatggatcgcgcattGTGAATCGTAAAttgttaga
tcgtgcatcttaaaattacaccaaccccttttttgattgcatgaatgtaT
GAAAGCTAGTAGTAAATTTATAAATtagtgatatttttgtaaaaattgat
tttattctttACCAATTTTAGTTATGACATCCTAAGCTATCAAAAAGTCC
ATATTACAATGtcacatttactgtaatattttaaaactacAGAATCGAAA
TAAATGGCGAGAAAGACTACATTATTACTAAAACTACACAtcaatgtgtt
attgttttaatgacttcatgattgaaatagggtcttttttcacaggataa
gtttgttgaaaaattctagaaggatcttttaaaactcatcaaattatttt
cagtttaaaagctCTGTATGAAATACTCTGTGTTCAGAAGCAGCCAgcag
agattttttttttaaatatgtgTTCTtgtcttctaggagaccaaatgtta
tgaccttttcaattttttatgcaaatgatgtgttctggtttctaggaaac
ctttatcgcactatttgtcttCCCTAAACTTGTCACTACATcatggtttg
atgtgttctcAAATATAGGAAAAACAGTTGGCAAGATAAACTNNNNNNNN
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ctggcatcattaggcatttgacaaaccgaacaattgcgcggaacaataga
attcaaaagaatactgcaagcaattacaaatgccaggctgatctaaacgc
agccattaatgtctagcagactgtatcagtatgcagtttattATTTACCc
cctatttacgaattccccagaaacctctaAGTATAAtttaaatgagttta
tttcaaaagaatttttttacatgattcccaaatgtataacagtagtTACT
AGCCTTTTAGTTATGGAAATattactttaattgaatcgaaataatagaca
tccTTTATGTTGTGATTCTCTATCactaaatctttttaaaaaagcattta
tgACATTCTCGgattgtgttttcaacgacgggaataaaaatataaacatt
gaaCTTCATCcgagatcttggatggtcgtcatggttacttttgtctgcgt
tgattgcgcgctgaatagaatctggattggtcggcacagcgtcgatatat
gatttcgacctgtgcttttcacggtagctATATTCTCCAATCTTTAAAAA
GATCTTACGTGGACGAAATCTCTAAAATGAGCTTGTCTTGCTGACAATAG
TTCGATATTGAAGAAAGTCGATTTGAAATGCAACTTTTTTGCAATGCAAC
TTTAATGACATAGAGTTAACAGTCCATTTAATTTCTATTACGTCCAACAT
TGCATTTTGATTCACAACATGAGGAATATTGTCGTGCGCTCAACGTACGA
GCTCTATATTtgatcatagaggtataaagaaacaagAAATGTATGCTATT
ATAACCAAGCTTGCagtacgattaaaaaagttacgacgattcattgtttc
tgacatcagtgtaagaaaatatttcgactaaaaaaaggcctgtaaacttg
ccaattcttcatcaaatgataagatttttcgatcagtgttttcttcaagg
tgaactctattgcttgatactttcctccaaaattctccagcaactttatg
tctacaaattgagtctgaaatcgtgtgtgctgaTAAAgagcttttcattt
tctggcttgagaaaatatattttcaaaacaaaatctatTGGATAACGAAA
ttgaacataaacttgtttcgtggacgaagttttatttaattttcgtatat
tagaaggctagaaatcttcaatattgatagtaagaatgttcagagacATC
TTGGGCTCTACTAAAAAGTTGTATTTTGTCGGGCGAGCTTAGTATTTTCT
TTTAGtatatttcataaaagaaactaaaagattttaacgaccaattaccg
acaaattcaactcctgtttttctttataattataCTTCCAAATGATTTGA
TTAGGACTTTATTCTTATGCAAACGTAACCATGTGATTAGTTTGCATTAG
AATTTTACAAATTCTTAGAATTTTACAAATTCGGTACTTGTTCAAACATG
ACCATGGGAATTAAGCATACATTGAGCTTCTCCCAAATGTCGTTGTTTAC
CATTTCGAATCGACACGTAAGNtagatgtgttctgaagctatAGCACGTT
AGATAAatttgattatacccctgtctcgtcagaacacatcctTTTTTTTA
GCTAATTAATTTTCGAAgttctgatcagaacagatcaaaatttctagctg
agatatgctctcagaacacatcggaaaaaaaggtcgcctcgccggctgct
tgcGATATTAGCTCTATAACGTATTTGTTtcattcttttgaaattctcaC
TCTCTTTTTTCTCTGTTCAAAATTTAAGATTATTTGTCTGTTGAAACNtt
taaattttttttcgttagcCATATTTGGAATTAGACTTATTATCATGCAA
ATGAGGAGCATTATTCCTCTCTTGCATAGAATTTTCATTATAAATActga
attttaatttaaaagtaGTTATAACTCTCTAGCAAGCATCGTATTTGGTA
TGTAAACTTTGTTATTTTAAAGTCTTGAAGATATATAAAAAGCTGCTGTT
TTATTTATTGTTTGAGCTTCGTTTTGGCGGATCACATAAGAGGTTTTGAA
CCTAGGATTTAAAGTTAAGATAAGTTAAGTTATCGGTTATCTCAAAAATA
CTGACTCGCGACAACGTTGACAATTTGAGAGCAACTTTTAGTTCCAATTC
AAcctcaaaaattacaaaaaggaTCTGGGAActatattattttctttaaa
ttctgaaaattttaggCAATCGACGACACAAACGAAAGAGATAGAAAAGA
GCACGCAAAAAGCTGAAGAAATCTGCTAAACCATCAAACATGAAAAAAGT
AAtacttttcattcaaattttgctgGTACTTGGCTCAACCAGTTCAACCG
ATGTCGCAAATGAAGATGCAGCTTTAGACACGAAAAGCAGTCCAAAAGTA
AGTTCTTGAGTTTTACCACTTCCATTGtatctttaaccctttaactgggG
TTgatctaaaaagcagggtagctaATTTGGATAGGTTGTGGGGTAGCCGT
GTATTTCACAGACCAgagtaaaaagataaaaactttTCCGATGATAATCC
TCATTGGAGCCAGgaggtaaaattttgaaaaaatttctatatattcatag
ccgtagtctgtatgtctgtatgtctgttttttgttttcagtgtgacactt
tcattttcgcaagcaatgtttttgttctcgataagtttgttttgattgat
agattggatagagcctggtttagactttattcagtctttgttttgaaatc
taaggcccatctacatttagtaatttcaatttctgtcTGCCTAGGGCTGC
CCATCCCTTTgtttttctcgtttttttatttgaaatgttttcgaatgtat
ttttactatcgtatttattaatgacattcaaatttttttcaaaacaaagc
aagtttcttttataaaaagaacatttcaaatgtaaatcaaaacataaaaa
tctaaaagtttgtcaaacaacaacagcattcaaagggcgataaaaaaACA
AGAGAAAGAATTAGTCCACCACCccttataaaaacattaaattttttaat
ttttctgcacacttttttaatttcgagctgcgcagttttgtaattaCACC
CTTTTGcacttttgaaatttcagaaaaaaatctaccatcttttattcaat
attttttccggATTCATCCTTGACCTTTGTCAAGGATCGTTGCAAAgctt
tttaattaaaatataCTTTACTTTATTTTCATATGATTCATTGATCACAG
TACTGATTTGTTTATTTGGCTTCCTAGCACTGGCTGAAATGTTAAATTTA
GTTGAGAAATCTAATAATAAAACCCGAAAACGTAATGCCGAGTTATAACT
CTTATAACTcggaattttgaaatgaattattttaagggctctgaccagaG
TGAATATTGATATTtgtcatgtacaaaatataaatttctgcctgatgcag
ctatatattttctgttaggccaattatccttgagtctgaaaattcaAGAA
TCGCAAAGAAaagatttgatgaagaagaacatGAAGACTTTTTCCGAAAT
ACtcttttcaactttgaagagcttattttcggcgaagaaaaacattttga
aattcttttttcagtaatggtgtatcttttaccaaactaaaaaagatttt
cgggaaatttttctaaaagcttacttgtctcaaaatcttaaaaatagtgc
tttttgactaatttttcatctcaatttttcatggaaaaacaaccataact
tttgatgcattaatttagaaaaattttccgaagaatttaaaacagttcaa
ttctttgcggacagtttgaaaaaacttcgaaacaaaaaggttaattaccc
atcaAAACTTAGCACTATTTTATTCCATACCTTGAATATCATAGAGGTGG
AGAACATTTTAACCTCTGATACCAATAATAGAAGTTTTATCGCGCAtttg
tcaatctaatcactgtagaaaaaatcaaagatgaagagaaaatattacca
tattagtttagcagactgtatcagtatgcagtttactatttacgaattcc
ccagaaacctctcTAAGTgtataattgaaatgagtttctttcaaaggaaa
tcttttacatgatccccaaatgtataacagcaatgtaatcgtcagccgtg
caaaattactcgaatctgattggttaagaggagtgcgattaatcgttaat
tgcactattaccactttttgcactcttcggcggggggacacttttgtccc
cttattcttttctctcccaagtcctgtNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNgaatgtttacaaaaatataaaagttag
aaaaagattctttttcaaaactatttactgacgattacctcggaatcgta
tgttttgtcgtgcaattaacgattaaccactcgtaacaaaggagaaaata
ccgtaatttgcactcgtcctcCGGACTCGTCAATTActcaaattactatt
ttctcctttgttactcgtgattaatcgttaattgcactccaaaccatacg
attactagtactaattacTAATAAACTGTTAATTAtagaaatgtcacttt
aattgaatcgaaataatagacagacctTTTTTGATGACTCTCTGtcactg
actctttttgaaaagcatttatgatatttttgagttgtgttttcaatgac
gggaataaaaatatcaactttgaacttcatccaagatcttggatggtggT
TATGGGTACTTTTcttgaatagaatctggattggtcagCACAGGTCGATA
TAAGCTTTCGGCCTGTGCTTGTCATGGCATTTAACTGCCGTTCGTGTTTT
TAagggttcgacctatttgccagatgtcggAACATCCCGACATCAGCGAC
CACAGAGTTAACCATCGCATTTAgcttttattttctgaaaaataccAGAA
ATATAAGTGATATGTGTTaactttgagttgaaaaatgtataattatgaaa
aacatttttgagatatattttaattattcaacagttCTATTTAATGCAAT
CTAGTTCAATATCGAACTATCAATGCACTTAGAAAACCTATGGCAAATAG
GTCGAGACCTCTCTTATCGGCAAATGCCGATACTGAcaacaaaaatcgaa
aatatgcTCTTGTCGGCACATGCCAACAGTGGCACGGAATGCTATTCAAT
GTTACATTAGACAAAGGattaaattttggcggaaagaaaattttactgat
tTTATGGAATTTTCCCGCCAAATCAATTTATTTTATGCAATTTCCTAATT
CGTGTCCTGTCATTTCATCATTTTGCTTATTTGATAAAagttattttcca
aaaatatcctgTAATATTCCAAATATTTGCCATTAATTGAATTTCCCCCT
GATAGAACTTTTCGGCaatccgctaaattaaattcccgcctaAATTCATT
CTTTAAGGAAAAATCTTTGAATGAATTACTTCGAAATTGTTTTCGAAGAC
TTGTGAGTCGCCTGCTCTGTGCTAGACATGCATATACACTAAACTTTAAT
GACTTTCATGCTCACACCCTTAAAAATAAATAGATGATCGTCAAAAGGAG
CAAAGATATTTTTATTGGGTCTTGGAACACACTAAAACACATATCAATCT
TTCCTAGCAATCTTCTATTCTTTTCATTAGAAAACCCTCGCTCAATCGTC
CCCTTCTACTTGTCAGCCTTGTCGAAAGGGTCGAGACGGTCGTGATGGCT
TGAACGGGCTACCTGGACGAGATGGGGAAGATGGATGCCAGGGACAAGCC
GGCAGAGATGGACTACCTGGCGCCAGAGGGCCAGAAGGTGTTCAAGGTAT
ACAAGGCCGTCCTGGGTCAAATGGAACCAAAGGAGACCAAGGTGTTCCTG
GAAAAGGTAAATGTGAAAGATTAAAGAGCAAAAGCATGTATGTAATTAAT
TTTAAAGTGATCAGTAAAAAGTAAGCTGCGGGCATTCTCTCAATTATGTA
CGTACTTTTTTGAATGGTCCTAAACGCATAAACGGGGGGACTCTCGAACG
GGAATTTTACATACgttatcaaaacatatcagaggatATCTTTTTGACTT
ACTCGCTCTCTTTTTATAACACATAGAAGATTTCGTTATACTGAAAgtaa
tcaaataaatttcattatTAGATGGCAATAACGGTATCAATGGAGTTCCT
GGGGTAAATGGAACAAAGGGCGAGCAAGGCCCACCTGGAAAAGGTTAGTA
AAGATTTCCTTTAATTTCTTTTACATGTATAGcatttataagcaaaaaaa
ggttcttgatcagatataaaaaaaacttagaaataaaatttttcttatgt
ATATAGCCTGATAAAGTAGAAGACTaaactagacgatgctatcgatACCA
TTGGAAAAATAAACGCAGGGAAATATGCATGCGTCTAGTTATAACGCTCA
TTACGGCGGTTTACGGAAAAAAGCGGCAGTAGAATTTAGCCCTGTGTAAA
TGACAGGATTGTCTAAGTATAGACTTTCGCAAATCGTGGTAcccatgaaa
atgaaatattaacGCTAATCAGCATAAAAAGTGACAAACAACTTCTATTA
AAAAAACCCATTGGTTGGAGGGTTTTCGCGGCGAGTTATGgcatgaattt
ttgaaaaatatggcGTAATGGCGTGCAAATCAAATAGCAGCGTGTTCATG
TAATGGAGATCTTTAAGGTGTTAATTCTGAGGCCAATAgctgttttctat
tttttttatttcagatggTTCAATTGGTGGCAGACACTTTAAAGAATGTG
CCTGGAGATTTACATCAAGTACAGATACTGGCTTGCTTAAGGTATGGCTT
TtttcaatgttaaaaaatttGATGTATTGATAATAACCATAGCAGAGCAT
TTACTGGTATATCATATTAATGTTGTGAATCCTCTGAAAATACCAAGCTT
CAAAGGATAGAGTGCAGCTTGCAGCTGATAGATTAAGGGCTCTGAGCACc
gtcaaaaatttgattttagtatttgaacatgaaagttatgttttaggttc
tttaacacttttaacaattAATTGCcgttataaattgctttttagtcGAA
TCCCTTGAAAGTAATtgagaatttaattgcaaaaatgacgccatgaactt
taaaaagaggttAAAAGTATGTTGCATTACcgtcttttataaaaagtgat
aaGTTTTAATGGAtgattaacctttttgtttcgaagttattccaaactgt
ccgcaaagtaTTGAACAGTTTTtaaaattaatgcatcaaaagttattagc
tgttttttctatcaaaaaaaaagtttgaatggaaaattggtgaaaaagcA
CTATTTACAAGGTTTTGTAACAAATAAGCTTTAcgaaaaatgttccaaaa
atatattttaagatCAGTAAAATATACATCATCTACCTGAAAAATAAtgt
ttcttcgccgaaaataagttgttcaaaattgaaatactcttcctcgcaaa
agtcttcattttcttcttcatcaaactttttcactgcgatttttcaattt
tcaaactcaaggataattggcctaacagaaaatgtaaaaCATGCAacagt
tttgtgggctacatcaagtaggaatttatattttgtacgtggcaaatata
aattcactatggtcagagcccttaaggccCTCCTTAAGCATATTATTATA
GTGGgatcaaaaaagaagaagaatttttcGGAAAGAAATTATTGTCTGTA
TTTTGAAGGGATATTTACTGTATgactttttattcaatctttcaaATGAA
CAGGATTGCaagctcaataaatcaaagACCGACTCGTACTTAATGGTGTC
AATCTCTTCAAATATATATCAAGGAAAGGCTCAAGCATGCAGTCGATGGT
TTGTCACCTTTGATGGAAAAGAATGTTCTCCTCACCCAATAGAACATGCG
TATTACAGAGGCACTACGAGTAATGCGAATGGTGATCACATCCCGTTCAC
AATGAACGGTGTTTGCAAAATCAACAAATCAGGCGTTGTGAGCGTTGGAT
TCAACGTTGGGAAATGTTCAGGTTTTGATTCGCTCGGTGATGCTTACACA
GGATTCAATACAGTGACACGTATCGTTGTTGAAGAGCTGTAaacacaaaa
tatttaattcaaTTTCTTAAATTAGAGACGTATAATGCATAATGTAGAAA
ATGGctgaaataatatttttac

Coding sequence (CDS) from alignment at sc0001279:1580..13701+

>TCONS_00035259 ID=TCONS_00035259|Name=TCONS_00035259|organism=Clytia hemisphaerica|type=CDS|length=4110bp|location=Sequence derived from alignment at sc0001279:1580..13701+ (Clytia hemisphaerica)
ATGAAAAAAGTAAtacttttcattcaaattttgctgGTACTTGGCTCAAC
CAGTTCAACCGATGTCGCAAATGAAGATGCAGCTTTAGACACGAAAAGCA
GTCCAAAAAAAACCCTCGCTCAATCGTCCCCTTCTACTTGTCAGCCTTGT
CGAAAGGGTCGAGACGGTCGTGATGGCTTGAACGGGCTACCTGGACGAGA
TGGGGAAGATGGATGCCAGGGACAAGCCGGCAGAGATGGACTACCTGGCG
CCAGAGGGCCAGAAGGTGTTCAAGGTATACAAGGCCGTCCTGGGTCAAAT
GGAACCAAAGGAGACCAAGGTGTTCCTGGAAAAGATGGCAATAACGGTAT
CAATGGAGTTCCTGGGGTAAATGGAACAAAGGGCGAGCAAGGCCCACCTG
GAAAAGatggTTCAATTGGTGGCAGACACTTTAAAGAATGTGCCTGGAGA
TTTACATCAAGTACAGATACTGGCTTGCTTAAGGATTGCaagctcaataa
atcaaagACCGACTCGTACTTAATGGTGTCAATCTCTTCAAATATATATC
AAGGAAAGGCTCAAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAA
GAATGTTCTCCTCACCCAATAGAACATGCGTATTACAGAGGCACTACGAG
TAATGCGAATGGTGATCACATCCCGTTCACAATGAACGGTGTTTGCAAAA
TCAACAAATCAGGCGTTGTGAGCGTTGGATTCAACGTTGGGAAATGTTCA
GGTTTTGATTCGCTCGGTGATGCTTACACAGGATTCAATACAGTGACACG
TATCGTTGTTGAAGAGCTGTAaATGAAAAAAGTAAtacttttcattcaaa
ttttgctgGTACTTGGCTCAACCAGTTCAACCGATGTCGCAAATGAAGAT
GCAGCTTTAGACACGAAAAGCAGTCCAAAAAAAACCCTCGCTCAATCGTC
CCCTTCTACTTGTCAGCCTTGTCGAAAGGGTCGAGACGGTCGTGATGGCT
TGAACGGGCTACCTGGACGAGATGGGGAAGATGGATGCCAGGGACAAGCC
GGCAGAGATGGACTACCTGGCGCCAGAGGGCCAGAAGGTGTTCAAGGTAT
ACAAGGCCGTCCTGGGTCAAATGGAACCAAAGGAGACCAAGGTGTTCCTG
GAAAAGATGGCAATAACGGTATCAATGGAGTTCCTGGGGTAAATGGAACA
AAGGGCGAGCAAGGCCCACCTGGAAAAGatggTTCAATTGGTGGCAGACA
CTTTAAAGAATGTGCCTGGAGATTTACATCAAGTACAGATACTGGCTTGC
TTAAGGATTGCaagctcaataaatcaaagACCGACTCGTACTTAATGGTG
TCAATCTCTTCAAATATATATCAAGGAAAGGCTCAAGCATGCAGTCGATG
GTTTGTCACCTTTGATGGAAAAGAATGTTCTCCTCACCCAATAGAACATG
CGTATTACAGAGGCACTACGAGTAATGCGAATGGTGATCACATCCCGTTC
ACAATGAACGGTGTTTGCAAAATCAACAAATCAGGCGTTGTGAGCGTTGG
ATTCAACGTTGGGAAATGTTCAGGTTTTGATTCGCTCGGTGATGCTTACA
CAGGATTCAATACAGTGACACGTATCGTTGTTGAAGAGCTGTAaATGAAA
AAAGTAAtacttttcattcaaattttgctgGTACTTGGCTCAACCAGTTC
AACCGATGTCGCAAATGAAGATGCAGCTTTAGACACGAAAAGCAGTCCAA
AAAAAACCCTCGCTCAATCGTCCCCTTCTACTTGTCAGCCTTGTCGAAAG
GGTCGAGACGGTCGTGATGGCTTGAACGGGCTACCTGGACGAGATGGGGA
AGATGGATGCCAGGGACAAGCCGGCAGAGATGGACTACCTGGCGCCAGAG
GGCCAGAAGGTGTTCAAGGTATACAAGGCCGTCCTGGGTCAAATGGAACC
AAAGGAGACCAAGGTGTTCCTGGAAAAGATGGCAATAACGGTATCAATGG
AGTTCCTGGGGTAAATGGAACAAAGGGCGAGCAAGGCCCACCTGGAAAAG
atggTTCAATTGGTGGCAGACACTTTAAAGAATGTGCCTGGAGATTTACA
TCAAGTACAGATACTGGCTTGCTTAAGGATTGCaagctcaataaatcaaa
gACCGACTCGTACTTAATGGTGTCAATCTCTTCAAATATATATCAAGGAA
AGGCTCAAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGT
TCTCCTCACCCAATAGAACATGCGTATTACAGAGGCACTACGAGTAATGC
GAATGGTGATCACATCCCGTTCACAATGAACGGTGTTTGCAAAATCAACA
AATCAGGCGTTGTGAGCGTTGGATTCAACGTTGGGAAATGTTCAGGTTTT
GATTCGCTCGGTGATGCTTACACAGGATTCAATACAGTGACACGTATCGT
TGTTGAAGAGCTGTAaATGAAAAAAGTAAtacttttcattcaaattttgc
tgGTACTTGGCTCAACCAGTTCAACCGATGTCGCAAATGAAGATGCAGCT
TTAGACACGAAAAGCAGTCCAAAAAAAACCCTCGCTCAATCGTCCCCTTC
TACTTGTCAGCCTTGTCGAAAGGGTCGAGACGGTCGTGATGGCTTGAACG
GGCTACCTGGACGAGATGGGGAAGATGGATGCCAGGGACAAGCCGGCAGA
GATGGACTACCTGGCGCCAGAGGGCCAGAAGGTGTTCAAGGTATACAAGG
CCGTCCTGGGTCAAATGGAACCAAAGGAGACCAAGGTGTTCCTGGAAAAG
ATGGCAATAACGGTATCAATGGAGTTCCTGGGGTAAATGGAACAAAGGGC
GAGCAAGGCCCACCTGGAAAAGatggTTCAATTGGTGGCAGACACTTTAA
AGAATGTGCCTGGAGATTTACATCAAGTACAGATACTGGCTTGCTTAAGG
ATTGCaagctcaataaatcaaagACCGACTCGTACTTAATGGTGTCAATC
TCTTCAAATATATATCAAGGAAAGGCTCAAGCATGCAGTCGATGGTTTGT
CACCTTTGATGGAAAAGAATGTTCTCCTCACCCAATAGAACATGCGTATT
ACAGAGGCACTACGAGTAATGCGAATGGTGATCACATCCCGTTCACAATG
AACGGTGTTTGCAAAATCAACAAATCAGGCGTTGTGAGCGTTGGATTCAA
CGTTGGGAAATGTTCAGGTTTTGATTCGCTCGGTGATGCTTACACAGGAT
TCAATACAGTGACACGTATCGTTGTTGAAGAGCTGTAaATGAAAAAAGTA
AtacttttcattcaaattttgctgGTACTTGGCTCAACCAGTTCAACCGA
TGTCGCAAATGAAGATGCAGCTTTAGACACGAAAAGCAGTCCAAAAAAAA
CCCTCGCTCAATCGTCCCCTTCTACTTGTCAGCCTTGTCGAAAGGGTCGA
GACGGTCGTGATGGCTTGAACGGGCTACCTGGACGAGATGGGGAAGATGG
ATGCCAGGGACAAGCCGGCAGAGATGGACTACCTGGCGCCAGAGGGCCAG
AAGGTGTTCAAGGTATACAAGGCCGTCCTGGGTCAAATGGAACCAAAGGA
GACCAAGGTGTTCCTGGAAAAGATGGCAATAACGGTATCAATGGAGTTCC
TGGGGTAAATGGAACAAAGGGCGAGCAAGGCCCACCTGGAAAAGatggTT
CAATTGGTGGCAGACACTTTAAAGAATGTGCCTGGAGATTTACATCAAGT
ACAGATACTGGCTTGCTTAAGGATTGCaagctcaataaatcaaagACCGA
CTCGTACTTAATGGTGTCAATCTCTTCAAATATATATCAAGGAAAGGCTC
AAGCATGCAGTCGATGGTTTGTCACCTTTGATGGAAAAGAATGTTCTCCT
CACCCAATAGAACATGCGTATTACAGAGGCACTACGAGTAATGCGAATGG
TGATCACATCCCGTTCACAATGAACGGTGTTTGCAAAATCAACAAATCAG
GCGTTGTGAGCGTTGGATTCAACGTTGGGAAATGTTCAGGTTTTGATTCG
CTCGGTGATGCTTACACAGGATTCAATACAGTGACACGTATCGTTGTTGA
AGAGCTGTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020578XLOC_020578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035259-exon-sc0001279-1491911889:1580..1606TCONS_00035259-exon-sc0001279-1491911889:1580..1606Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1510915933:1580..1606TCONS_00035259-exon-sc0001279-1510915933:1580..1606Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1575043694:1580..1606TCONS_00035259-exon-sc0001279-1575043694:1580..1606Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1491911889:6945..7126TCONS_00035259-exon-sc0001279-1491911889:6945..7126Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1510915933:6945..7126TCONS_00035259-exon-sc0001279-1510915933:6945..7126Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1575043694:6945..7126TCONS_00035259-exon-sc0001279-1575043694:6945..7126Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1491911889:11160..11385TCONS_00035259-exon-sc0001279-1491911889:11160..11385Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1510915933:11160..11385TCONS_00035259-exon-sc0001279-1510915933:11160..11385Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1575043694:11160..11385TCONS_00035259-exon-sc0001279-1575043694:11160..11385Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1491911889:11651..11722TCONS_00035259-exon-sc0001279-1491911889:11651..11722Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1510915933:11651..11722TCONS_00035259-exon-sc0001279-1510915933:11651..11722Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1575043694:11651..11722TCONS_00035259-exon-sc0001279-1575043694:11651..11722Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1491911889:12244..12320TCONS_00035259-exon-sc0001279-1491911889:12244..12320Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1510915933:12244..12320TCONS_00035259-exon-sc0001279-1510915933:12244..12320Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1575043694:12244..12320TCONS_00035259-exon-sc0001279-1575043694:12244..12320Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1491911889:13283..13701TCONS_00035259-exon-sc0001279-1491911889:13283..13701Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1510915933:13283..13701TCONS_00035259-exon-sc0001279-1510915933:13283..13701Clytia hemisphaericaexon
TCONS_00035259-exon-sc0001279-1575043694:13283..13701TCONS_00035259-exon-sc0001279-1575043694:13283..13701Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035259-proteinTCONS_00035259-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001279supercontigsc0001279:1580..13701 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0952311	0.473257	0.351657	15.8208	6.93224	13.5391	13.0965	8.07881	7.98607	20.6531	20.3175	2.55597	1.51412	1.22911	1.08801	0.885358	1.09589	0.777652	0.472317	9.1748	12.4178	0.084116	0.139433	2.17987	2.84859
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
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BLAST of TCONS_00035259 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.475e-24
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 3 
Query:  354 RGPEGVQGIQGRPGSNGTKGDQGVPGKDXXXXXXXXXXXXXTKGEQGPPGKDG--SIGGRHFKECAW-RFTSSTDTGLLKDCKLNKSKTDSYLMVSISSNI-YQGKAQACSRWFVTFDGKECS-PHPIEHAYYRGTTSNANGD----HIPFTMNGVCKINKSGVVSVGFNVGKCSGFDSLGDAYTGFNTVTRIVVEEL 920
            +GP GV G  G PG+NG  G  G+PG+DG             KGE+G   ++        ++K+C+W       D G + +C   K +++S L V  S ++  + +   C RW+ TF+G ECS P PIE   Y    S         H   ++ G+C+   +G+V V   VG CS +   GDA TG+N+V+RI++EEL
Sbjct:   57 QGPAGVPGRDGSPGANGIPGTPGIPGRDGF------------KGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK-GDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00035259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR13.475e-2434.34Collagen triple helix repeat-containing protein 1 ... [more]
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