TCONS_00035259-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035259-protein
Unique Name	TCONS_00035259-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	273

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035259-protein ID=TCONS_00035259-protein|Name=TCONS_00035259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MKKVILFIQILLVLGSTSSTDVANEDAALDTKSSPKKTLAQSSPSTCQPC
RKGRDGRDGLNGLPGRDGEDGCQGQAGRDGLPGARGPEGVQGIQGRPGSN
GTKGDQGVPGKDGNNGINGVPGVNGTKGEQGPPGKDGSIGGRHFKECAWR
FTSSTDTGLLKDCKLNKSKTDSYLMVSISSNIYQGKAQACSRWFVTFDGK
ECSPHPIEHAYYRGTTSNANGDHIPFTMNGVCKINKSGVVSVGFNVGKCS
GFDSLGDAYTGFNTVTRIVVEEL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020578	XLOC_020578	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035259	TCONS_00035259	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008160	Collagen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008160	Collagen triple helix repeat	PFAM	PF01391	Collagen	coord: 53..107 e-value: 4.0E-9 score: 36.0 coord: 77..135 e-value: 8.3E-10 score: 38.2
None	No IPR available	GENE3D	2.160.20.50		coord: 37..116 e-value: 6.2E-5 score: 22.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..140

Blast

[Close]

BLAST of TCONS_00035259-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.652e-25
Identity = 66/193 (34.20%), Postives = 102/193 (52.85%), Query Frame = 0

Query:   90 VQGIQGRPGSNGTKGDQGVPGKDGNNGINGVPGVNGTKGEQGPPGKDG--SIGGRHFKECAW-RFTSSTDTGLLKDCKLNKSKTDSYLMVSISSNI-YQGKAQACSRWFVTFDGKECS-PHPIEHAYYRGTTSNANGD----HIPFTMNGVCKINKSGVVSVGFNVGKCSGFDSLGDAYTGFNTVTRIVVEEL 273
            +QG  G PG +G+ G  G+PG        G+PG +G KGE+G   ++        ++K+C+W       D G + +C   K +++S L V  S ++  + +   C RW+ TF+G ECS P PIE   Y    S         H   ++ G+C+   +G+V V   VG CS +   GDA TG+N+V+RI++EEL
Sbjct:   56 LQGPAGVPGRDGSPGANGIPGTP------GIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPK-GDASTGWNSVSRIIIEEL 241

The following BLAST results are available for this feature:

BLAST of TCONS_00035259-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035259-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CTHR1	1.652e-25	34.20	Collagen triple helix repeat-containing protein 1 ...	[more]

You are here

TCONS_00035259-protein (polypeptide) - C. hemisphaerica