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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035255 ID=TCONS_00035255|Name=TCONS_00035255|organism=Clytia hemisphaerica|type=transcript|length=1558bp
TTGAAAAGAATCTCTGTCCAATCCTCATATATTAGGAGATAAataattta
aatacaaactatTGATCAAATACCGGGTGTTTTCCAATATTCTAATATCC
AATTTATTTGGTATTCATTTTTGCATTAATTAATTAATGTTTGCTATTGA
TCATTTattaatgattgtttttaagGGATACTGTTTCAGTCAGTGCGATG
CCCTTTgctttatattttgtaaattttacagGTATAAGTTTTTCAGAAGT
AAGCCGAGACAAACTTATTATCTATACTGGCGGAGATTTTGAGAAGTGTA
CACATTTCAAAATTGCTTTGAGCTGAGCCAAGTTGACTTCATCGTGTATT
TTTTTACAGAATATATTGAAGAAGGACTTTATAGTACTTACCGGGTAAAA
CCGTAAGAAAAGTCTGTAAATATTGTAAAGTTGAAGTATCACAATAAACT
TGTACAACCCAAAAAGTGGAAAATTATTTAACCGGAacattttaaatcac
gtgatGGCGAATAGAGGACTGAACCGAAATCGTTATTACGTCATCGCTTT
TGTTTGTACCGCAATTGCTTTTCGCCTTGGGATTGAAATCGGACGACGAT
GGCCGGATTTTCCATGCTCGGCACCGACAACCCCCGAACCGTACAAAGTC
GTTTATCCAATCGCAAAGCCGACTTCATATCAGAATCACAACAAAgctat
tgtttttcaaaaagaagTTGTATCCCCTCAAAAAGACAGAGAAGATATCG
ACCCAGACTTGAGGTTGATTCGTAATAACATCTCACGAACAAACCTTAAA
GTTACGCCCCCGCCAACGACGCCCGATTATGTACAAATCAAGCAGGCGGA
TTCAATGGGGGCGGGTGATTTTTTATGCGGTGGAAGTGTCATCGAAAATT
CATGTGCATTCTACGTCGATAATCTTTTAGCCGCCAAAGAGGTATGTGAC
TCTTTCAGTGGACACTGCAAAGGATTTGTCTTCAATGCTATGCCGCCCTC
GGCTGACAAGAAAATTCAATATAtggttttcataaaaaagagAGTGGATA
AAATGACAGAAAGTATTTTAatggatttttttgttaaatccAAATACATG
TCAGAAATTGGGTGGAAATTTGACTGATTGGAACTATTTCGGTTAGCTCA
GTCCGAATGATCACCTCGGATGTTTTTGACCAATCAGATGGACAGAGATG
AAAATCACAGAAAACCTTGATGACTTATACTTGGGAAGTGAGATAAAACC
CTATCGTGACTTACGGAACTCGGAAATTCGTCAGAAGCTTGTCGTGCTTT
GgtgtttttttgaagatttttatttCGCCTTTGTCATTAAGAAATTTTTc
cataaaaatatatttcttaaaaattcattaaataacaaaattttatcGAA
TTTAGTTTCCCTACAAAGAACTTGAGGCAATCTGTACTCAGAGCCACTTA
CACCActgtttgattttactgatggacatAATACAATCGTGAGCGATATA
TAGAATCATAAATAAACGAACTAAGGGAATGGGTTCGAGTCTTCTTGAGA
AGTATTTA Run BLAST on NCBI protein sequence of TCONS_00035255-protein >TCONS_00035255-protein ID=TCONS_00035255-protein|Name=TCONS_00035255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MANRGLNRNRYYVIAFVCTAIAFRLGIEIGRRWPDFPCSAPTTPEPYKVV
YPIAKPTSYQNHNKAIVFQKEVVSPQKDREDIDPDLRLIRNNISRTNLKV
TPPPTTPDYVQIKQADSMGAGDFLCGGSVIENSCAFYVDNLLAAKEVCDS
FSGHCKGFVFNAMPPSADKKIQYMVFIKKRVDKMTESILMDFFVKSKYMS
EIGWKFD Run BLAST on NCBI transcript from alignment at sc0001278:6901..8458 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035255 ID=TCONS_00035255|Name=TCONS_00035255|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at sc0001278:6901..8458 (Clytia hemisphaerica)
TAAATACTTCTCAAGAAGACTCGAACCCATTCCCTTAGTTCGTTTATTTA
TGATTCTATATATCGCTCACGATTGTATTatgtccatcagtaaaatcaaa
cagTGGTGTAAGTGGCTCTGAGTACAGATTGCCTCAAGTTCTTTGTAGGG
AAACTAAATTCgataaaattttgttatttaatgaatttttaagaaatata
tttttatggAAAAATTTCTTAATGACAAAGGCGaaataaaaatcttcaaa
aaaacacCAAAGCACGACAAGCTTCTGACGAATTTCCGAGTTCCGTAAGT
CACGATAGGGTTTTATCTCACTTCCCAAGTATAAGTCATCAAGGTTTTCT
GTGATTTTCATCTCTGTCCATCTGATTGGTCAAAAACATCCGAGGTGATC
ATTCGGACTGAGCTAACCGAAATAGTTCCAATCAGTCAAATTTCCACCCA
ATTTCTGACATGTATTTggatttaacaaaaaaatccatTAAAATACTTTC
TGTCATTTTATCCACTctcttttttatgaaaaccaTATATTGAATTTTCT
TGTCAGCCGAGGGCGGCATAGCATTGAAGACAAATCCTTTGCAGTGTCCA
CTGAAAGAGTCACATACCTCTTTGGCGGCTAAAAGATTATCGACGTAGAA
TGCACATGAATTTTCGATGACACTTCCACCGCATAAAAAATCACCCGCCC
CCATTGAATCCGCCTGCTTGATTTGTACATAATCGGGCGTCGTTGGCGGG
GGCGTAACTTTAAGGTTTGTTCGTGAGATGTTATTACGAATCAACCTCAA
GTCTGGGTCGATATCTTCTCTGTCTTTTTGAGGGGATACAActtcttttt
gaaaaacaatagcTTTGTTGTGATTCTGATATGAAGTCGGCTTTGCGATT
GGATAAACGACTTTGTACGGTTCGGGGGTTGTCGGTGCCGAGCATGGAAA
ATCCGGCCATCGTCGTCCGATTTCAATCCCAAGGCGAAAAGCAATTGCGG
TACAAACAAAAGCGATGACGTAATAACGATTTCGGTTCAGTCCTCTATTC
GCCatcacgtgatttaaaatgtTCCGGTTAAATAATTTTCCACTTTTTGG
GTTGTACAAGTTTATTGTGATACTTCAACTTTACAATATTTACAGACTTT
TCTTACGGTTTTACCCGGTAAGTACTATAAAGTCCTTCTTCAATATATTC
TGTAAAAAAATACACGATGAAGTCAACTTGGCTCAGCTCAAAGCAATTTT
GAAATGTGTACACTTCTCAAAATCTCCGCCAGTATAGATAATAAGTTTGT
CTCGGCTTACTTCTGAAAAACTTATACctgtaaaatttacaaaatataaa
gcAAAGGGCATCGCACTGACTGAAACAGTATCCcttaaaaacaatcatta
atAAATGATCAATAGCAAACATTAATTAATTAATGCAAAAATGAATACCA
AATAAATTGGATATTAGAATATTGGAAAACACCCGGTATTTGATCAatag
tttgtatttaaattatTTATCTCCTAATATATGAGGATTGGACAGAGATT
CTTTTCAA Coding sequence (CDS) from alignment at sc0001278:6901..8458 >TCONS_00035255 ID=TCONS_00035255|Name=TCONS_00035255|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0001278:6901..8458 (Clytia hemisphaerica)
TCAGTCAAATTTCCACCCAATTTCTGACATGTATTTggatttaacaaaaa
aatccatTAAAATACTTTCTGTCATTTTATCCACTctcttttttatgaaa
accaTATATTGAATTTTCTTGTCAGCCGAGGGCGGCATAGCATTGAAGAC
AAATCCTTTGCAGTGTCCACTGAAAGAGTCACATACCTCTTTGGCGGCTA
AAAGATTATCGACGTAGAATGCACATGAATTTTCGATGACACTTCCACCG
CATAAAAAATCACCCGCCCCCATTGAATCCGCCTGCTTGATTTGTACATA
ATCGGGCGTCGTTGGCGGGGGCGTAACTTTAAGGTTTGTTCGTGAGATGT
TATTACGAATCAACCTCAAGTCTGGGTCGATATCTTCTCTGTCTTTTTGA
GGGGATACAActtctttttgaaaaacaatagcTTTGTTGTGATTCTGATA
TGAAGTCGGCTTTGCGATTGGATAAACGACTTTGTACGGTTCGGGGGTTG
TCGGTGCCGAGCATGGAAAATCCGGCCATCGTCGTCCGATTTCAATCCCA
AGGCGAAAAGCAATTGCGGTACAAACAAAAGCGATGACGTAATAACGATT
TCGGTTCAGTCCTCTATTCGCCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035255-exon-sc0001278-1491911889:6901..8458 | TCONS_00035255-exon-sc0001278-1491911889:6901..8458 | Clytia hemisphaerica | exon |
| TCONS_00035255-exon-sc0001278-1510915933:6901..8458 | TCONS_00035255-exon-sc0001278-1510915933:6901..8458 | Clytia hemisphaerica | exon |
| TCONS_00035255-exon-sc0001278-1575043694:6901..8458 | TCONS_00035255-exon-sc0001278-1575043694:6901..8458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001278 | supercontig | sc0001278:6901..8458 . |
Blast
The following BLAST results are available for this feature:
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