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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035253 ID=TCONS_00035253|Name=TCONS_00035253|organism=Clytia hemisphaerica|type=transcript|length=1341bp
ccgaaacatgttggaaatttctagcatctaatggtatttttgtctcgatc
ctccgtccgatatatttacaatttcatattgaaaacaattttacaaTAAA
CGTGTCAAAGATGAGCAACTATCGCTCAAAAGTTTTTTACATTGCCTCAA
GATTCATAAACCAAGGCGTTGTATGTTCTATACTCTATACCCTCATAATA
CTGTATTAAAACTACAGATTGCATAGTTATAGTTATGTCCGGCAGAATTT
GAGGTTTAACATACATCTACAAATGTTGCTAAGTAAGTGTTTTGTCTTTT
TGAGGTGTCTGAAAAGCGAACCCTTATTCCTTCTTTCAAAAGATCACTGG
AGTTTTCGTCCAGAACCAACCAATCTTCAAATTgtaagaaatgaaaattt
tctttgaggGCAATGACATGTTATTATTCTTTGATATGCTCGAAGAATAA
TTGACCAGTCGGTATCCAATTCAACCAGCCCAGAAACTCCAAGAAAGAGA
CGTTCCCATTATGGTCTTTATCTAATTGCTGTAACGCAATCTCAATATTT
TCTGCATTTCCTCCAGAGTTGATCAAAACTGtcttcaattcttctttatc
TAAAGAGAAATTATGATCTCTGTCGTAAGATTGAAATAAGTCTAAAGCTT
GACGAATCAATTTGTAACGCACTTGATCAGTGACATTTTGTAGGCGTTCT
TTACTTCTCATCCAGAAAAGAAATTCTTCCCATGAGACAGTACCATCATC
ATCTTGGTCTAGGATGTATAAATAGACTTCACTCTGTTCGTCCGTTAAAC
CCAAATCTTCTTTAAACAAGACTTGTATCTCGTCCCGGCTTAATTGGCCA
TCCCGGTTCACATCATATTTACGGAACAAGCTTTTCAAAGCAACATCTGG
GCAACCATCATCAAAAAATGAGCCGGTACGTTTACGTCTTTCAGGACCTG
TGTGATTCcgatttttagccaatttttcttCAATGACTTTGATTGTTTCG
ATTGACATTTTAAAAGGTTCCCTTTGCGAAGGTATTCCTAGTGTCGAATG
TTGTGTTTTATTTGAATCGATTTGCATTTTGTAGCTTTTTcttatacttt
tttctttagcctGTAAAACAAATACCAAACATATCAAATTTAAGTATTAA
GTCTACATTGTAACCTGATACACGTTTTCCATTTTACCCGCGTGTCATCA
TAATACTACTTGGAGGAGAACACTTGCCTTCAGGTAAGAACTCTGATCGA
CCAAATTAACACTCCGTTCGAGATATATTTCTATAACTATAATGCATAAT
CTTGAAAATGTTAGCCTTCAAGAAACGTATGATATAATCTT Run BLAST on NCBI protein sequence of TCONS_00035253-protein >TCONS_00035253-protein ID=TCONS_00035253-protein|Name=TCONS_00035253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MQIDSNKTQHSTLGIPSQREPFKMSIETIKVIEEKLAKNRNHTGPERRKR
TGSFFDDGCPDVALKSLFRKYDVNRDGQLSRDEIQVLFKEDLGLTDEQSE
VYLYILDQDDDGTVSWEEFLFWMRSKERLQNVTDQVRYKLIRQALDLFQS
YDRDHNFSLDKEELKTVLINSGGNAENIEIALQQLDKDHNGNVSFLEFLG
WLNWIPTGQLFFEHIKE Run BLAST on NCBI transcript from alignment at sc0001278:1064..2404 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035253 ID=TCONS_00035253|Name=TCONS_00035253|organism=Clytia hemisphaerica|type=transcript|length=1341bp|location=Sequence derived from alignment at sc0001278:1064..2404 (Clytia hemisphaerica)
AAGATTATATCATACGTTTCTTGAAGGCTAACATTTTCAAGATTATGCAT
TATAGTTATAGAAATATATCTCGAACGGAGTGTTAATTTGGTCGATCAGA
GTTCTTACCTGAAGGCAAGTGTTCTCCTCCAAGTAGTATTATGATGACAC
GCGGGTAAAATGGAAAACGTGTATCAGGTTACAATGTAGACTTAATACTT
AAATTTGATATGTTTGGTATTTGTTTTACaggctaaagaaaaaagtataa
gAAAAAGCTACAAAATGCAAATCGATTCAAATAAAACACAACATTCGACA
CTAGGAATACCTTCGCAAAGGGAACCTTTTAAAATGTCAATCGAAACAAT
CAAAGTCATTGaagaaaaattggctaaaaatcgGAATCACACAGGTCCTG
AAAGACGTAAACGTACCGGCTCATTTTTTGATGATGGTTGCCCAGATGTT
GCTTTGAAAAGCTTGTTCCGTAAATATGATGTGAACCGGGATGGCCAATT
AAGCCGGGACGAGATACAAGTCTTGTTTAAAGAAGATTTGGGTTTAACGG
ACGAACAGAGTGAAGTCTATTTATACATCCTAGACCAAGATGATGATGGT
ACTGTCTCATGGGAAGAATTTCTTTTCTGGATGAGAAGTAAAGAACGCCT
ACAAAATGTCACTGATCAAGTGCGTTACAAATTGATTCGTCAAGCTTTAG
ACTTATTTCAATCTTACGACAGAGATCATAATTTCTCTTTAgataaagaa
gaattgaagaCAGTTTTGATCAACTCTGGAGGAAATGCAGAAAATATTGA
GATTGCGTTACAGCAATTAGATAAAGACCATAATGGGAACGTCTCTTTCT
TGGAGTTTCTGGGCTGGTTGAATTGGATACCGACTGGTCAATTATTCTTC
GAGCATATCAAAGAATAATAACATGTCATTGCcctcaaagaaaattttca
tttcttacAATTTGAAGATTGGTTGGTTCTGGACGAAAACTCCAGTGATC
TTTTGAAAGAAGGAATAAGGGTTCGCTTTTCAGACACCTCAAAAAGACAA
AACACTTACTTAGCAACATTTGTAGATGTATGTTAAACCTCAAATTCTGC
CGGACATAACTATAACTATGCAATCTGTAGTTTTAATACAGTATTATGAG
GGTATAGAGTATAGAACATACAACGCCTTGGTTTATGAATCTTGAGGCAA
TGTAAAAAACTTTTGAGCGATAGTTGCTCATCTTTGACACGTTTAttgta
aaattgttttcaatatgaaattgtaaatatatcggacggaggatcgagac
aaaaataccattagatgctagaaatttccaacatgtttcgg Coding sequence (CDS) from alignment at sc0001278:1064..2404 >TCONS_00035253 ID=TCONS_00035253|Name=TCONS_00035253|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0001278:1064..2404 (Clytia hemisphaerica)
ATGCAAATCGATTCAAATAAAACACAACATTCGACACTAGGAATACCTTC
GCAAAGGGAACCTTTTAAAATGTCAATCGAAACAATCAAAGTCATTGaag
aaaaattggctaaaaatcgGAATCACACAGGTCCTGAAAGACGTAAACGT
ACCGGCTCATTTTTTGATGATGGTTGCCCAGATGTTGCTTTGAAAAGCTT
GTTCCGTAAATATGATGTGAACCGGGATGGCCAATTAAGCCGGGACGAGA
TACAAGTCTTGTTTAAAGAAGATTTGGGTTTAACGGACGAACAGAGTGAA
GTCTATTTATACATCCTAGACCAAGATGATGATGGTACTGTCTCATGGGA
AGAATTTCTTTTCTGGATGAGAAGTAAAGAACGCCTACAAAATGTCACTG
ATCAAGTGCGTTACAAATTGATTCGTCAAGCTTTAGACTTATTTCAATCT
TACGACAGAGATCATAATTTCTCTTTAgataaagaagaattgaagaCAGT
TTTGATCAACTCTGGAGGAAATGCAGAAAATATTGAGATTGCGTTACAGC
AATTAGATAAAGACCATAATGGGAACGTCTCTTTCTTGGAGTTTCTGGGC
TGGTTGAATTGGATACCGACTGGTCAATTATTCTTCGAGCATATCAAAGA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035253-exon-sc0001278-1491911889:1064..2404 | TCONS_00035253-exon-sc0001278-1491911889:1064..2404 | Clytia hemisphaerica | exon |
| TCONS_00035253-exon-sc0001278-1510915933:1064..2404 | TCONS_00035253-exon-sc0001278-1510915933:1064..2404 | Clytia hemisphaerica | exon |
| TCONS_00035253-exon-sc0001278-1575043694:1064..2404 | TCONS_00035253-exon-sc0001278-1575043694:1064..2404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001278 | supercontig | sc0001278:1064..2404 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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