TCONS_00035229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035229
Unique NameTCONS_00035229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035229 ID=TCONS_00035229|Name=TCONS_00035229|organism=Clytia hemisphaerica|type=transcript|length=1684bp
TCACTCTTCAAAGTTTCACGGTTTACAACACCCCTCCGAGAAAACTCACT
TCAAAGATACCACCAGTCATTACCACGCTCTCCGCAGTTGTCTCTAGAAC
TGATCTTTCTAGCAGGTAACCTAGAGCTCTCTCAGCAGGTTTACGGTTTG
TAAGACCTCTTGTGGTAATTCCATCTCAAAGTACCACTGTATTTATCAAT
AGATAATTACCATGGTTTCCTAACCTCCTCGAAAGGATTCATCCTCAAAA
TACGATTACATTTCTCAATGAATTATAACCAGTTATCTTAACAGTTCCAC
AGTTTCCCACATCGCCCACATCTCTTCTAGAATATTCAGTCCGAAGATCC
CACTGAATTCTATCAATAAATAATGATCACATTCTCCAAAGATTCATGCT
TTGCCAACCTCTGCTATAAAACTCACTGTGAGAATACCACCGGTTCTCTC
AGTTAATAACTACCATGCTCACCAAATTCTATCGGTTTGCTACACGtcgc
ctagaaaatttagtcTCAAATACAACTGGGTTTTCTCAGTAAATTTCTAC
CATTATCTCCGAAGTTCCACGGTTTGCACAGCCTTTCCAGAGTATGCCTT
TTCAGAATATCCCTTTCCGAGATGGCATTTCTATGGAATCCATTTTAAAA
ACTCCACCAATTTCAAGTTAACTACTACCACATACTCTCCAAAATTCTCT
GTTTGTTACACCTCCTCAAAGATTTCGCTGCCAAAATACCATTGTATTTC
TAAATGAAATATTCCCCCCACTTCTCCCCACAGTTGTATGGCTTGCCACA
CCTAGATAATTCAGTTTCAAAATACCACTGGATTTTCTCAATGAATAATG
ACCACGTTTCAAAGTTTCACGGTTTGCAAACCCTCTCCTAGAAAACTCAC
TTCGAAAATACCACCACTTTCTTCAGTTAGCTATCTACCACGCTTTTCAA
AGTTCTCTGTTTGTCTCCTCAAAAGTTCATCCTCTCCAAAGTTTCATCCT
AGAAAACCCATTTTAAGTACCACCAGTTTCCTCAGTTAATCACCACAGAT
TTACTATTTTATTTGTCACTCCTTcccaaaaagttcaaaataccACTGGA
TTTTCTGAATGAACAATTGTCAAGTTCTCCAAACTCTCATGGGCTGCCAC
AcctctcataaaaaaattcactacaAAAACACCACCAGTTTTCTCAGTAT
TTTACCAACCCTCCACAGTTTCTTCTATGAATTCAGCCATACCACCAGTT
TTTCCTAGTAAATTTATGATCATCTCTCTTCAGTGCCACGGTTTGCTAAT
TTCCTCTCAAAGTTTCAGCCATAAGATACCAACTCTCTTCTCAATATTTT
AAAGTTACACTAGAATCTCAGGTTTCATGGCTCACATTTCCGATCCAAGC
AAATTCCAATTCTCAAAATACCATTAACCTTCCAATGAAAAATATCTAAA
CAGTTCTACAGCTCACCACTCAGTACCTCTTATTTCTTTATAAATCAGTC
TCAAAATATATCTCTAAAGCTTCAAGATTGGCTCACCTCTCCTTAAAAAA
TCCAGTCTCCAATAATCAACTTCGCCACACCTCATTTCAGTCAATACCAT
TTCAACAACTCTCCTCCAAAAGTCCAGTCTTCAAATACCACTGGTACCGG
TACCACCattttctctctttctctctccCACTTT
Run BLAST on NCBI

transcript from alignment at sc0001277:19911..21649-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035229 ID=TCONS_00035229|Name=TCONS_00035229|organism=Clytia hemisphaerica|type=transcript|length=1739bp|location=Sequence derived from alignment at sc0001277:19911..21649- (Clytia hemisphaerica)
TCACTCTTCAAAGTTTCACGGTTTACAACACCCCTCCGAGAAAACTCACT
TCAAAGATACCACCAGTCATTACCACGCTCTCCGCAGTTGTCTCTAGAAC
TGATCTTTCTAGCAGGTAACCTAGAGCTCTCTCAGCAGGTTTACGGTTTG
TAAGACCTCTTGTGGTAATTCCATCTCAAAGTACCACTGTATTTATCAAT
AGATAATTACCATGGTTTCCTAACCTCCTCGAAAGGATTCATCCTCAAAA
TACGATTACATTTCTCAATGAATTATAACCAGTTATCTTAACAGTTCCAC
AGTTTCCCACATCGCCCACATCTCTTCTAGAATATTCAGTCCGAAGATCC
CACTGAATTCTATCAATAAATAATGATCACATTCTCCAAAGATTCATGCT
TTGCCAACCTCTGCTATAAAACTCACTGTGAGAATACCACCGGTTCTCTC
AGTTAATAACTACCATGCTCACCAAATTCTATCGGTTTGCTACACGTCGC
CTAGAAAATTTAGTCTCAAATACAACTGGGTTTTCTCAGTAAATTTCTAC
CATTATCTCCGAAGTTCCACGGTTTGCACAGCCTTTCCAGAGTATGCCTT
TTCAGAATATCCCTTTCCGAGATGGCATTTCTATGGAATCCATTTTAAAA
ACTCCACCAATTTCAAGTTAACTACTACCACATACTCTCCAAAATTCTCT
GTTTGTTACACCTCCTCAAAGATTTCGCTGCCAAAATACCATTGTATTTC
TAAATGAAATATTCCCCCCACTTCTCCCCACAGTTGTATGGCTTGCCACA
CCTAGATAATTCAGTTTCAAAATACCACTGGATTTTCTCAATGAATAATG
ACCACGTTTCAAAGTTTCACGGTTTGCAAACCCTCTCCTAGAAAACTCAC
TTCGAAAATACCACCACTTTCTTCAGTTAGCTATCTACCACGCTTTTCAA
AGTTCTCTGTTTGTCTCCTCAAAAGTTCATCCTCTCCAAAGTTTCATCCT
AGAAAACCCATTTTAAGTACCACCAGTTTCCTCAGTTAATCACCACAGAT
TTACTATTTTATTTGTCACTCCTTCCCAAAAAGTTCAAAATACCACTGGA
TTTTCTGAATGAACAATTGTCAAGTTCTCCAAACTCTCATGGGCTGCCAC
ACCTCTCATAAAAAAATTCACTACAAAAACACCACCAGTTTTCTCAGTAT
TTTACCAACCCTCCACAGTTTCTTCTATGAATTCAGCCATACCACCAGTT
TTTCCTAGTAAATTTATGATCATCTCTCTTCAGTGCCACGGTTTGCTAAT
TTCCTCTCAAAGTTTCAGCCATAAGATACCAACTCTCTTCTCAATATTTT
AAAGTTACACTAGAATCTCAGGTTTTATGGCTCACATTTNTCTTCTCAAT
ATTTTAAAGTTACACTAGAATCTCAGGTTTCATGGCTCACATTTCCGATC
CAAGCAAATTCCAATTCTCAAAATACCATTAACCTTCCAATGAAAAATAT
CTAAACAGTTCTACAGCTCACCACTCAGTACCTCTTATTTCTTTATAAAT
CAGTCTCAAAATATATCTCTAAAGCTTCAAGATTGGCTCACCTCTCCTTA
AAAAATCCAGTCTCCAATAATCAACTTCGCCACACCTCATTTCAGTCAAT
ACCATTTCAACAACTCTCCTCCAAAAGTCCAGTCTTCAAATACCACTGGT
ACCGGTACCACCATTTTCTCTCTTTCTCTCTCCCACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020553XLOC_020553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035229-exon-sc0001277-1575043694:20279..21649TCONS_00035229-exon-sc0001277-1575043694:20279..21649Clytia hemisphaericaexon
TCONS_00035229-exon-sc0001277-1575043694:19911..20223TCONS_00035229-exon-sc0001277-1575043694:19911..20223Clytia hemisphaericaexon
TCONS_00035229-exon-sc0001277-1510915933:20279..21649TCONS_00035229-exon-sc0001277-1510915933:20279..21649Clytia hemisphaericaexon
TCONS_00035229-exon-sc0001277-1510915933:19911..20223TCONS_00035229-exon-sc0001277-1510915933:19911..20223Clytia hemisphaericaexon
TCONS_00035229-exon-sc0001277-1491911889:20279..21649TCONS_00035229-exon-sc0001277-1491911889:20279..21649Clytia hemisphaericaexon
TCONS_00035229-exon-sc0001277-1491911889:19911..20223TCONS_00035229-exon-sc0001277-1491911889:19911..20223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001277supercontigsc0001277:19911..21649 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.51804	1.3437	0.368859	0.0799318	0	0.377622	0.742165	0.789849	0.304031	0.510069	0.637938	0.258414	0.207957	0.18274	0.0682896	0.175885	0.198619	0.366268	0.109185	0.0535113	0.325577	0.204178	0.303362	0.384065	0.077473	0.589723	1.80496	0.985551	0.243479	0.205832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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