TCONS_00035222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035222
Unique NameTCONS_00035222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035222 ID=TCONS_00035222|Name=TCONS_00035222|organism=Clytia hemisphaerica|type=transcript|length=611bp
cttttttgcacaaaccccacgtaactatgggcgagcacctcGTCGCTTaa
atgttggcttgaaatcgaaaatgaaaccactcaaaacgaaagtaaaattg
gcccgtactcgaaatcctgtaatcttgatatacgagtttcAGTCTATACT
GTCTATGGGATTTTAAGCTTCCTGGGAAAGCACCACCATACTATGTCCAG
TGGGATCAGCAAACTTTGTACGGTAGTGAAAATAGGTTAACTTGAAATCC
ACCGTACATCCCAGCGTACACCCACTGTACATCAATGTTGAATGTACTGC
GGTGTCCAGGGTGTGTCGTAGCCAAttagctgtgttttaaacattccatt
ttatttgaaatctctactgatttttctatttatatTTGGTTGAGTCACGG
GAAGCTTTGAGGCCCATTtttgcaactatagacgctttcaatcaGCGCCC
GTCAGCCCCTTGAGCTGACTACCCAATTTCCCTCATATGGCATGGGTTAA
CCAGGgcaaaggttcattcacttgccaagtgaaccgctgcaagTGGGAAT
CGACCTCAGTCGCCTGTACAGCAACGAGTCAGGGCCTCCTTGGTCTTtta
taacattagtt
Run BLAST on NCBI

transcript from alignment at sc0001275:29210..29820

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035222 ID=TCONS_00035222|Name=TCONS_00035222|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at sc0001275:29210..29820 (Clytia hemisphaerica)
aactaatgttataaAAGACCAAGGAGGCCCTGACTCGTTGCTGTACAGGC
GACTGAGGTCGATTCCCActtgcagcggttcacttggcaagtgaatgaac
ctttgcCCTGGTTAACCCATGCCATATGAGGGAAATTGGGTAGTCAGCTC
AAGGGGCTGACGGGCGCtgattgaaagcgtctatagttgcaaaAATGGGC
CTCAAAGCTTCCCGTGACTCAACCAAatataaatagaaaaatcagtagag
atttcaaataaaatggaatgtttaaaacacagctaaTTGGCTACGACACA
CCCTGGACACCGCAGTACATTCAACATTGATGTACAGTGGGTGTACGCTG
GGATGTACGGTGGATTTCAAGTTAACCTATTTTCACTACCGTACAAAGTT
TGCTGATCCCACTGGACATAGTATGGTGGTGCTTTCCCAGGAAGCTTAAA
ATCCCATAGACAGTATAGACTgaaactcgtatatcaagattacaggattt
cgagtacgggccaattttactttcgttttgagtggtttcattttcgattt
caagccaacatttAAGCGACgaggtgctcgcccatagttacgtggggttt
gtgcaaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020548XLOC_020548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035222-exon-sc0001275-1491911889:29210..29820TCONS_00035222-exon-sc0001275-1491911889:29210..29820Clytia hemisphaericaexon
TCONS_00035222-exon-sc0001275-1510915933:29210..29820TCONS_00035222-exon-sc0001275-1510915933:29210..29820Clytia hemisphaericaexon
TCONS_00035222-exon-sc0001275-1575043694:29210..29820TCONS_00035222-exon-sc0001275-1575043694:29210..29820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001275supercontigsc0001275:29210..29820 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1252	0.609663	1.22256	2.00268	1.09712	1.06619	1.61582	0.849784	1.11291	0.903602	1.16236	1.27941	1.60103	1.56728	0.638333	0.650354	0.990304	1.34612	0.0951605	0.61588	0.718576	1.242	0	0.0919957	4.18523	3.33407	0.242025	0.774887	0.403575	1.29973
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top