TCONS_00035195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035195
Unique NameTCONS_00035195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035195 ID=TCONS_00035195|Name=TCONS_00035195|organism=Clytia hemisphaerica|type=transcript|length=843bp
GGGAAAGCAAAAAGCAAGTGCCAAAAATCgatccaaaagttaaaaacGAG
TTGCAACAAATCCTAAAAAGAATATCTCTAAGAAGCAAAAAGTTGTTAAG
AGTTCTGAATCACTATCACCAATAATATCTGTTCCTTCTGATTTGATTGG
AAAAATTGTAAATCATAACACTGAAAGAGATGGGGAACTTCGGTGGCATA
AGGGTGTAGTTATTCGGCAAGAAGGGCGAGGAGTTAAAAACCCTAAATTT
CCCATTCAATATCATTCTAGTGACTCAGAAGGAAATGATATATGTATTTC
AAACCTTTATGAGGACTTTGTAAGTGGTGACTTGATTCTCATAAGTATTG
TTCCCTCAGATTTCATTGATTCTAAAATACAAGTCCTTTATGAGGAAGAC
AACATTGATAAATGGTGGGAATATGAAGTTGCTGATATTGATTTGGAAAG
TAAAAATTCTGCAAACCCTGATTTCTTTGTGTATTATGAACTGAATGAGG
AGAGTGAAGATGAGATTGCAGAGAAAGAATACTTTTTAGAGCCTTTGGTA
GAACTATATTTAAGTGGACGTGTGAGGTTTTTAGAATGTGTTGTAGGACT
GAGTGAAGAAATTACTGACTGACTCTAGATCAGATTTTCTCCTTGGACTT
TCAAAGAAATATCAAATGATTTGAGTCATATTCAACCATAAAACAATGGC
TATAAATTCACCTAAAAGCCCACTTTGAGAGAagacaatattttgcaaag
caAAAACTCTAAGTTAAGGAAGTGGTAAGCAAAGTCATCTAAATACAGGG
CCAAAAGATGAATGTTAGGTAAAAACTGACAATATTTCCATCT
Run BLAST on NCBI

transcript from alignment at sc0001271:6997..7839

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035195 ID=TCONS_00035195|Name=TCONS_00035195|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at sc0001271:6997..7839 (Clytia hemisphaerica)
AGATGGAAATATTGTCAGTTTTTACCTAACATTCATCTTTTGGCCCTGTA
TTTAGATGACTTTGCTTACCACTTCCTTAACTTAGAGTTTTtgctttgca
aaatattgtctTCTCTCAAAGTGGGCTTTTAGGTGAATTTATAGCCATTG
TTTTATGGTTGAATATGACTCAAATCATTTGATATTTCTTTGAAAGTCCA
AGGAGAAAATCTGATCTAGAGTCAGTCAGTAATTTCTTCACTCAGTCCTA
CAACACATTCTAAAAACCTCACACGTCCACTTAAATATAGTTCTACCAAA
GGCTCTAAAAAGTATTCTTTCTCTGCAATCTCATCTTCACTCTCCTCATT
CAGTTCATAATACACAAAGAAATCAGGGTTTGCAGAATTTTTACTTTCCA
AATCAATATCAGCAACTTCATATTCCCACCATTTATCAATGTTGTCTTCC
TCATAAAGGACTTGTATTTTAGAATCAATGAAATCTGAGGGAACAATACT
TATGAGAATCAAGTCACCACTTACAAAGTCCTCATAAAGGTTTGAAATAC
ATATATCATTTCCTTCTGAGTCACTAGAATGATATTGAATGGGAAATTTA
GGGTTTTTAACTCCTCGCCCTTCTTGCCGAATAACTACACCCTTATGCCA
CCGAAGTTCCCCATCTCTTTCAGTGTTATGATTTACAATTTTTCCAATCA
AATCAGAAGGAACAGATATTATTGGTGATAGTGATTCAGAACTCTTAACA
ACTTTTTGCTTCTTAGAGATATTCTTTTTAGGATTTGTTGCAACTCgttt
ttaacttttggatcGATTTTTGGCACTTGCTTTTTGCTTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020530XLOC_020530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035195-exon-sc0001271-1491911889:6997..7839TCONS_00035195-exon-sc0001271-1491911889:6997..7839Clytia hemisphaericaexon
TCONS_00035195-exon-sc0001271-1510915933:6997..7839TCONS_00035195-exon-sc0001271-1510915933:6997..7839Clytia hemisphaericaexon
TCONS_00035195-exon-sc0001271-1575043694:6997..7839TCONS_00035195-exon-sc0001271-1575043694:6997..7839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001271supercontigsc0001271:6997..7839 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.839379	0.763958	0.380155	0.0619871	0.981023	0.775217	0.79138	1.07764	0.518707	0.116819	0.510242	0.111804	0.186081	0.386495	0.571952	0.750191	0.672126	0.430567	0	0.248988	1.13618	1.02921	0.513288	0.34999	0	0	1.07422	0.491332	0.496877	0.506239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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