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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035189 ID=TCONS_00035189|Name=TCONS_00035189|organism=Clytia hemisphaerica|type=transcript|length=4208bpRun BLAST on NCBI protein sequence of TCONS_00035189-protein >TCONS_00035189-protein ID=TCONS_00035189-protein|Name=TCONS_00035189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp MQRHYFKLTTPVRPEDENPTHEPLFPTLDQENDVISAKAMFGDLDAKWFARun BLAST on NCBI transcript from alignment at sc0001271:34511..51987- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035189 ID=TCONS_00035189|Name=TCONS_00035189|organism=Clytia hemisphaerica|type=transcript|length=17477bp|location=Sequence derived from alignment at sc0001271:34511..51987- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001271:34511..51987- >TCONS_00035189 ID=TCONS_00035189|Name=TCONS_00035189|organism=Clytia hemisphaerica|type=CDS|length=17550bp|location=Sequence derived from alignment at sc0001271:34511..51987- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035189 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 9.998e-30 Identity = 122/473 (25.79%), Postives = 204/473 (43.13%), Query Frame = 3
Query: 1521 WQEDKYFVQRRLAGQCPYFIRRVTKNEEKDIGFSLDKLKSMLSENFDWNFHLKQKYGNEMNKLVKEKRVFVLYHEHYDELSHTKDILDTNPHDNIKLEQTTSPIVLFVLTDEKELEVVAIQMDSTKKD-SPVFTPKSSPLEWSKAKGHVEIVEMATCQLIGHLLETHATQEIICNLFPRHLGSLHPLHQLMTPHCQGTSPVXXXXXXXXXDVERYMHRLFSIGYVGSRQYVNKYYEEQDYLNADFNHQLKRNGLADEDLIRYHPYRDDGKLIWNEIKTFAKKYVKLYYKSNEDVIYDNELQGLVNELSADGTAQNXXXXXXXXXXXXXXXXDLETFLTRFIWLA-VKHAINSYPLIPYGAFVPSAPTKLYENPQAT-------HYAHSLPNALVVLTQEVLTFTLASFRVNRLF--DYSKLMLDKKARCLVKSTYNKLNLCVQKELEARNKARYERGDLTYQFMEPKWLPNSV 2906
WQED F + L G P IRR T+ EK L M+ + + L+Q+ V++ +F++ E D + D N D L+ +PI L ++ +AIQ++ D +P+F P + +W AK V + Q I HLL TH E+ R L ++HP+ +L+ H + T + L+ + + G G Q V + ++ Y + F +K G+ ++ I Y+ YRDDG L+W I+TF + V +YY+ ++ V D ELQ VN++ G K GFP + + L +LT I+ A +HA ++ + +++P+AP + P +LP+ + L+ F+ N LF Y + +K + + K + + RNK + L Y ++ P +PNSV
Sbjct: 227 WQEDLMFGYQFLNGCNPVLIRRCTELPEK-----LPVTTEMVECSLERQLSLEQE--------VQQGNIFIVDFELLDGI-------DANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGR---KSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKK----QLPYYYLSPDRIPNSV 672 The following BLAST results are available for this feature:
BLAST of TCONS_00035189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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