TCONS_00035189-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035189-protein
Unique Name	TCONS_00035189-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	584

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035189-protein ID=TCONS_00035189-protein|Name=TCONS_00035189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp
MQRHYFKLTTPVRPEDENPTHEPLFPTLDQENDVISAKAMFGDLDAKWFA
NYYGMVRTLNATAATLLSLVKNNPMKTYADYKYIYHAFMGTIQKIQQLGP
EQFSLPSQTPYFTDIIENGRWQEDKYFVQRRLAGQCPYFIRRVTKNEEKD
IGFSLDKLKSMLSENFDWNFHLKQKYGNEMNKLVKEKRVFVLYHEHYDEL
SHTKDILDTNPHDNIKLEQTTSPIVLFVLTDEKELEVVAIQMDSTKKDSP
VFTPKSSPLEWSKAKGHVEIVEMATCQLIGHLLETHATQEIICNLFPRHL
GSLHPLHQLMTPHCQGTSPVGGLGLAALLDVERYMHRLFSIGYVGSRQYV
NKYYEEQDYLNADFNHQLKRNGLADEDLIRYHPYRDDGKLIWNEIKTFAK
KYVKLYYKSNEDVIYDNELQGLVNELSADGTAQNGGGKYKGFPGKFTTTK
DLETFLTRFIWLAVKHAINSYPLIPYGAFVPSAPTKLYENPQATHYAHSL
PNALVVLTQEVLTFTLASFRVNRLFDYSKLMLDKKARCLVKSTYNKLNLC
VQKELEARNKARYERGDLTYQFMEPKWLPNSVHS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020526	XLOC_020526	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035189	TCONS_00035189	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C
IPR020834	LipOase_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 93..487 e-value: 4.5E-39 score: 134.4
IPR013819	Lipoxygenase, C-terminal	PROSITE	PS51393	LIPOXYGENASE_3	coord: 1..584 score: 58.618
IPR013819	Lipoxygenase, C-terminal	SUPERFAMILY	48484	Lipoxigenase	coord: 71..582
None	No IPR available	GENE3D	1.20.245.10		coord: 274..584 e-value: 2.5E-55 score: 187.5
None	No IPR available	GENE3D	3.10.450.60		coord: 148..272 e-value: 3.0E-13 score: 49.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR020834	Lipoxygenase, conserved site	PROSITE	PS00081	LIPOXYGENASE_2	coord: 303..313

Blast

[Close]

BLAST of TCONS_00035189-protein vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.747e-36
Identity = 123/473 (26.00%), Postives = 205/473 (43.34%), Query Frame = 0

Query:  121 WQEDKYFVQRRLAGQCPYFIRRVTKNEEKDIGFSLDKLKSMLSENFDWNFHLKQKYGNEMNKLVKEKRVFVLYHEHYDELSHTKDILDTNPHDNIKLEQTTSPIVLFVLTDEKELEVVAIQMDSTKKD-SPVFTPKSSPLEWSKAKGHVEIVEMATCQLIGHLLETHATQEIICNLFPRHLGSLHPLHQLMTPHCQGTSPVGGLGLAALLDVERYMHRLFSIGYVGSRQYVNKYYEEQDYLNADFNHQLKRNGLADEDLIRYHPYRDDGKLIWNEIKTFAKKYVKLYYKSNEDVIYDNELQGLVNELSADGTAQNGGGKYKGFPGKFTTTKDLETFLTRFIWLA-VKHAINSYPLIPYGAFVPSAPTKLYENPQAT-------HYAHSLPNALVVLTQEVLTFTLASFRVNRLF--DYSKLMLDKKARCLVKSTYNKLNLCVQKELEARNKARYERGDLTYQFMEPKWLPNSV 582
            WQED  F  + L G  P  IRR T+  EK     L     M+  + +    L+Q+        V++  +F++  E  D +       D N  D   L+   +PI L       ++  +AIQ++    D +P+F P  +  +W  AK  V   +    Q I HLL TH   E+      R L ++HP+ +L+  H + T  +       L+       +  + G  G  Q V +  ++  Y +  F   +K  G+  ++ I Y+ YRDDG L+W  I+TF  + V +YY+ ++ V  D ELQ  VN++   G     G K  GFP    + + L  +LT  I+ A  +HA  ++    + +++P+AP  +   P              +LP+           + L+ F+ N LF   Y +    +K      + + K    +   +  RNK +     L Y ++ P  +PNSV
Sbjct:  227 WQEDLMFGYQFLNGCNPVLIRRCTELPEK-----LPVTTEMVECSLERQLSLEQE--------VQQGNIFIVDFELLDGI-------DANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMR---GRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLPDRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKK----QLPYYYLSPDRIPNSV 672

The following BLAST results are available for this feature:

BLAST of TCONS_00035189-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035189-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LOX5	1.747e-36	26.00	Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO...	[more]

You are here

TCONS_00035189-protein (polypeptide) - C. hemisphaerica