TCONS_00035163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035163
Unique NameTCONS_00035163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035163 ID=TCONS_00035163|Name=TCONS_00035163|organism=Clytia hemisphaerica|type=transcript|length=546bp
ggagcgcgagatcaaaaaacgtaggcggcaaacgctatttcacatctctc
aaaccggtgaaattgcatattttagtcacgtgactctggtaagAAAttct
tccaaagatgagcttcactttttgataaaagccgcaaatctagcccttcg
ggctttacagatatctgtgatcGGATCCAGCTTTCCTTCAAATCCACCGA
AAAACAGCAGCGGACCTCCCTCTCATCACTTAGCATTATGTTTTGATAAG
TATTTGATATCAACTTATCCTGATTAGATGATTGGAGAAATCATTCTCTT
GACATTGGCTTGCCCAACCCCATCTCTGTGACCCGGTAATTATTTCTGTC
TACGCATACCTTACTGATCCGGCGAGAGTTTCCGGTTAACCTTGTTACAG
TGACACACTGATTATGTCGGTGTATCCTTTCCTTCTCTTGTCATTAACAC
GCTGATTTTTTTGATATCTGTACACGCCTGTCTCAATGACCATTCGAACA
TTTCCCCTATCATTTTTACTTGATGAAAGTTTTTGGACTCGATTGT
Run BLAST on NCBI

transcript from alignment at sc0001265:56228..56773

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035163 ID=TCONS_00035163|Name=TCONS_00035163|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at sc0001265:56228..56773 (Clytia hemisphaerica)
ACAATCGAGTCCAAAAACTTTCATCAAGTAAAAATGATAGGGGAAATGTT
CGAATGGTCATTGAGACAGGCGTGTACAGATATCAAAAAAATCAGCGTGT
TAATGACAAGAGAAGGAAAGGATACACCGACATAATCAGTGTGTCACTGT
AACAAGGTTAACCGGAAACTCTCGCCGGATCAGTAAGGTATGCGTAGACA
GAAATAATTACCGGGTCACAGAGATGGGGTTGGGCAAGCCAATGTCAAGA
GAATGATTTCTCCAATCATCTAATCAGGATAAGTTGATATCAAATACTTA
TCAAAACATAATGCTAAGTGATGAGAGGGAGGTCCGCTGCTGTTTTTCGG
TGGATTTGAAGGAAAGCTGGATCCgatcacagatatctgtaaagcccgaa
gggctagatttgcggcttttatcaaaaagtgaagctcatctttggaagaa
TTTcttaccagagtcacgtgactaaaatatgcaatttcaccggtttgaga
gatgtgaaatagcgtttgccgcctacgttttttgatctcgcgctcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020507XLOC_020507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035163-exon-sc0001265-1491911889:56228..56773TCONS_00035163-exon-sc0001265-1491911889:56228..56773Clytia hemisphaericaexon
TCONS_00035163-exon-sc0001265-1510915933:56228..56773TCONS_00035163-exon-sc0001265-1510915933:56228..56773Clytia hemisphaericaexon
TCONS_00035163-exon-sc0001265-1575043694:56228..56773TCONS_00035163-exon-sc0001265-1575043694:56228..56773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001265supercontigsc0001265:56228..56773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2985	0.948078	0.976201	0.770257	1.16886	1.53688	1.36831	0.272232	0.737613	1.3479	1.40633	1.12972	1.08798	1.03398	0.515622	1.36428	0.451901	0.315179	0.790316	0.409428	0.170527	1.26142	1.44794	1.44817	0.406794	0.64917	0	0.485413	0.34496	0.735145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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