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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035149 ID=TCONS_00035149|Name=TCONS_00035149|organism=Clytia hemisphaerica|type=transcript|length=1700bp
TGATTTTATAGATTTTCGAAAAGCAGGTGGTGTTTCTGATAACACTTTAC
GTTTATTCACCGTAGTTGAAGTATATCTAAGGAGAGCAACTGAAAacctt
cgaaaaagaaaaaatttagaatgcaATCGTAATCTTGACCTGGAAACCCT
TATTGCCAGAAATAGTTGGGCAACATTAGAAGAAATGGAGGAAGTCATTC
CATTCCACATGAAACAGTTTAAAACGGTCATTCAAAAGTGCTCATCGAGT
GAAAAATCAAGATTTCTAACAAAAGGAGAGTTAGTTTTCTCCATTCGATT
TATAACTACGTTGCTTTTTCTTCGAGTGAAATGCTCAAGACCTATGACTT
TCCAATTCCTCACCGTCGATATGGTCAACAAAGCAAGAACAAATGGTGGA
TTTGTAGATCAAAAGGAGTTTAAAACTGCTTCAAGATATATCTTTGATAC
ACTGATACTAACGGATGACACAATCGAAATAATTGACTTGTACTTGGAAT
ACATACGACCTCGCCTTAATCCACAATGTGACTTCTTACTCCTTTCTACG
AACGGAACTCAGTTTCAATCGTTGACTTCCGCCATGACAATACTTGTTCA
CCAGGCGATTGGTAAACACATCAACCCAACAAGATATAGGCAAATTGTAG
AGACTGAAAGTAGTGAGAGGTTAAATCATGAAGAACTGCATTTCATCACT
GAAGACCAAAAACACAGTTCAACAGTGGCAAAGGTACACTACAAAAAGAC
ACAGTCTAGAATCGTTGCAGTCGAGGGACGAAAATGCatggaaaaaatga
caaaagaagcAAGAGGTAACAAAAGTTTAGTGGAACTATTCAATAATGTT
TCTGGttcttttgatgaaaaagttttATTCCAAAGTCAAAGAATAATTGA
TGACCAAAGCACATCTTCCAGCTCCGGAAACGTACAACCAATGAACGACG
ACCCGTTCCAACCAACGAACGACGACCCGTTCCAACCAACAAACGACGAC
CCGTATCAACCAATGAACGAATCGCTGAATGAATCGACCGACTTGGCAGT
TACAAAAGTTCGGCATACTGATAATACTATAACCGGGACTACCGCCTCTA
AAGTAAAAACGACTGAGATGCCTAATGACGATATCACTTTCAAGAGAGAA
ATTGCTACACAACAGGCCACCAAGAGAACAACGAAAAATGTAAAGTTTAC
TAGTGAAGAAGATCGTTACTTAAAGCAAGGCATCCAGAAATACGGACCAA
AGTCCTGGGCTCTTATTTTGAAAGACACTTCTTTGAAGTTTCATTCAACA
AGAACAAGAGACTCTTTAAGAGTCAGAGCTGACAGTGCTTGTTTCAGgaa
actttttttatcaaaatagttgaatatttttaatgaaTTATCTATGTGTC
TCTATAAGTTATgcaaaatttatatttcatcatttctttttttaagccaa
atgaaaaatgtcaaaaaaacctATCAATAACTATACCGCCGCAAAAAGAC
TTTACTTTGAATTCGCCCTAATGTCCTCCTCGGACGATTCTGACTTTGAC
TTTGAAGCTTTCAATTCAGGCcagaaaaagaaggaaaagaaacCGACAGA
ACCATTGTTAAAACGTTCAAAAAGAGAGGGGATGTGCTTATGTTCGGGCG
ACGATAGTAAATCGGAGAGCTCTCAGACTGAAAAGAtaccaaaatctgaa Run BLAST on NCBI protein sequence of TCONS_00035149-protein >TCONS_00035149-protein ID=TCONS_00035149-protein|Name=TCONS_00035149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
DFIDFRKAGGVSDNTLRLFTVVEVYLRRATENLRKRKNLECNRNLDLETL
IARNSWATLEEMEEVIPFHMKQFKTVIQKCSSSEKSRFLTKGELVFSIRF
ITTLLFLRVKCSRPMTFQFLTVDMVNKARTNGGFVDQKEFKTASRYIFDT
LILTDDTIEIIDLYLEYIRPRLNPQCDFLLLSTNGTQFQSLTSAMTILVH
QAIGKHINPTRYRQIVETESSERLNHEELHFITEDQKHSSTVAKVHYKKT
QSRIVAVEGRKCMEKMTKEARGNKSLVELFNNVSGSFDEKVLFQSQRIID
DQSTSSSSGNVQPMNDDPFQPTNDDPFQPTNDDPYQPMNESLNESTDLAV
TKVRHTDNTITGTTASKVKTTEMPNDDITFKREIATQQATKRTTKNVKFT
SEEDRYLKQGIQKYGPKSWALILKDTSLKFHSTRTRDSLRVRADSACFRK
LFLSK Run BLAST on NCBI transcript from alignment at sc0001262:46175..48108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035149 ID=TCONS_00035149|Name=TCONS_00035149|organism=Clytia hemisphaerica|type=transcript|length=1934bp|location=Sequence derived from alignment at sc0001262:46175..48108- (Clytia hemisphaerica)
TGATTTTATAGATTTTCGAAAAGCAGGTGGTGTTTCTGATAACACTTTAC
GTTTATTCACCGTAGTTGAAGTATATCTAAGGAGAGCAACTGAAAACCTT
CGAAAAAGAAAAAATTTAGAATGCAATCGTAATCTTGACCTGGAAACCCT
TATTGCCAGAAATAGTTGGGCAACATTAGAAGAAATGGAGGAAGTCATTC
CATTCCACATGAAACAGTTTAAAACGGTCATTCAAAAGTGCTCATCGAGT
GAAAAATCAAGATTTCTAACAAAAGGAGAGTTAGTTTTCTCCATTCGATT
TATAACTACGTTGCTTTTTCTTCGAGTGAAATGCTCAAGACCTATGACTT
TCCAATTCCTCACCGTCGATATGGTCAACAAAGCAAGAACAAATGGTGGA
TTTGTAGATCAAAAGGAGTTTAAAACTGCTTCAAGGTAATTGCTTTACAA
AGCTACTGTTCGAAAACTTTTCAAAGATTTATCTTTCGCTGCCTTTCTTT
TTATTTCTCTCTTAGTCCCAAGTCTTAGTCTCAACAATCATTCATATCAA
ATGTATGCAATACCCTTTTAAAATGTAAAATTATTTCAGGAGATTATAAT
TCTGATTTTCAGATATATCTTTGATACACTGATACTAACGGATGACACNT
TATAATTCTGATTTTTCAGATATATCTTTGATACACTGATACTAACGGAT
GACACAATCGAAATAATTGACTTGTACTTGGAATACATACGACCTCGCCT
TAATCCACAATGTGACTTCTTACTCCTTTCTACGAACGGAACTCAGTTTC
AATCGTTGACTTCCGCCATGACAATACTTGTTCACCAGGCGATTGGTAAA
CACATCAACCCAACAAGATATAGGCAAATTGTAGAGACTGAAAGTAGTGA
GAGGTTAAATCATGAAGAACTGCATTTCATCACTGAAGACCAAAAACACA
GTTCAACAGTGGCAAAGGTACACTACAAAAAGACACAGTCTAGAATCGTT
GCAGTCGAGGGACGAAAATGCATGGAAAAAATGACAAAAGAAGCAAGAGG
TAACAAAAGTTTAGTGGAACTATTCAATAATGTTTCTGGTTCTTTTGATG
AAAAAGTTTTATTCCAAAGTCAAAGAATAATTGATGACCAAAGCACATCT
TCCAGCTCCGGAAACGTACAACCAATGAACGACGACCCGTTCCAACCAAC
GAACGACGACCCGTTCCAACCAACAAACGACGACCCGTATCAACCAATGA
ACGAATCGCTGAATGAATCGACCGACTTGGCAGTTACAAAAGTTCGGCAT
ACTGATAATACTATAACCGGGACTACCGCCTCTAAAGTAAAAACGACTGA
GATGCCTAATGACGATATCACTTTCAAGAGAGAAATTGCTACACAACAGG
CCACCAAGAGAACAACGAAAAATGTAAAGTTTACTAGTGAAGAAGATCGT
TACTTAAAGCAAGGCATCCAGAAATACGGACCAAAGTCCTGGGCTCTTAT
TTTGAAAGACACTTCTTTGAAGTTTCATTCAACAAGAACAAGAGACTCTT
TAAGAGTCAGAGCTGACAGTGCTTGTTTCAGGAAACTTTTTTTATCAAAA
TAGTTGAATATTTTTAATGAATTATCTATGTGTCTCTATAAGTTATGCAA
AATTTATATTTCATCATTTCTTTTTTTAAGCCAAATGAAAAATGTCAAAA
AAACCTATCAATAACTATACCGCCGCAAAAAGACTTTACTTTGAATTCGC
CCTAATGTCCTCCTCGGACGATTCTGACTTTGACTTTGAAGCTTTCAATT
CAGGCCAGAAAAAGAAGGAAAAGAAACCGACAGAACCATTGTTAAAACGT
TCAAAAAGAGAGGGGATGTGCTTATGTTCGGGCGACGATAGTAAATCGGA
GAGCTCTCAGACTGAAAAGATACCAAAATCTGAA Coding sequence (CDS) from alignment at sc0001262:46175..48108- >TCONS_00035149 ID=TCONS_00035149|Name=TCONS_00035149|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0001262:46175..48108- (Clytia hemisphaerica)
ATATATCTTTGATACACTGATACTAACGGATGACACAATCGAAATAATTG
ACTTGTACTTGGAATACATACGACCTCGCCTTAATCCACAATGTGACTTC
TTACTCCTTTCTACGAACGGAACTCAGTTTCAATCGTTGACTTCCGCCAT
GACAATACTTGTTCACCAGGCGATTGGTAAACACATCAACCCAACAAGAT
ATAGGCAAATTGTAGAGACTGAAAGTAGTGAGAGGTTAAATCATGAAGAA
CTGCATTTCATCACTGAAGACCAAAAACACAGTTCAACAGTGGCAAAGGT
ACACTACAAAAAGACACAGTCTAGAATCGTTGCAGTCGAGGGACGAAAAT
GCATGGAAAAAATGACAAAAGAAGCAAGAGGTAACAAAAGTTTAGTGGAA
CTATTCAATAATGTTTCTGGTTCTTTTGATGAAAAAGTTTTATTCCAAAG
TCAAAGAATAATTGATGACCAAAGCACATCTTCCAGCTCCGGAAACGTAC
AACCAATGAACGACGACCCGTTCCAACCAACGAACGACGACCCGTTCCAA
CCAACAAACGACGACCCGTATCAACCAATGAACGAATCGCTGAATGAATC
GACCGACTTGGCAGTTACAAAAGTTCGGCATACTGATAATACTATAACCG
GGACTACCGCCTCTAAAGTAAAAACGACTGAGATGCCTAATGACGATATC
ACTTTCAAGAGAGAAATTGCTACACAACAGGCCACCAAGAGAACAACGAA
AAATGTAAAGTTTACTAGTGAAGAAGATCGTTACTTAAAGCAAGGCATCC
AGAAATACGGACCAAAGTCCTGGGCTCTTATTTTGAAAGACACTTCTTTG
AAGTTTCATTCAACAAGAACAAGAGACTCTTTAAGAGTCAGAGCTGACAG
TGCTTGTTTCAGGAAACTTTTTTTATCAAAATAGGATTTTATAGATTTTC
GAAAAGCAGGTGGTGTTTCTGATAACACTTTACGTTTATTCACCGTAGTT
GAAGTATATCTAAGGAGAGCAACTGAAAACCTTCGAAAAAGAAAAAATTT
AGAATGCAATCGTAATCTTGACCTGGAAACCCTTATTGCCAGAAATAGTT
GGGCAACATTAGAAGAAATGGAGGAAGTCATTCCATTCCACATGAAACAG
TTTAAAACGGTCATTCAAAAGTGCTCATCGAGTGAAAAATCAAGATTTCT
AACAAAAGGAGAGTTAGTTTTCTCCATTCGATTTATAACTACGTTGCTTT
TTCTTCGAGTGAAATGCTCAAGACCTATGACTTTCCAATTCCTCACCGTC
GATATGGTCAACAAAGCAAGAACAAATGGTGGATTTGTAGATCAAAAGGA
GTTTAAAACTGCTTCAAGATATATCTTTGATACACTGATACTAACGGATG
ACACAATCGAAATAATTGACTTGTACTTGGAATACATACGACCTCGCCTT
AATCCACAATGTGACTTCTTACTCCTTTCTACGAACGGAACTCAGTTTCA
ATCGTTGACTTCCGCCATGACAATACTTGTTCACCAGGCGATTGGTAAAC
ACATCAACCCAACAAGATATAGGCAAATTGTAGAGACTGAAAGTAGTGAG
AGGTTAAATCATGAAGAACTGCATTTCATCACTGAAGACCAAAAACACAG
TTCAACAGTGGCAAAGGTACACTACAAAAAGACACAGTCTAGAATCGTTG
CAGTCGAGGGACGAAAATGCATGGAAAAAATGACAAAAGAAGCAAGAGGT
AACAAAAGTTTAGTGGAACTATTCAATAATGTTTCTGGTTCTTTTGATGA
AAAAGTTTTATTCCAAAGTCAAAGAATAATTGATGACCAAAGCACATCTT
CCAGCTCCGGAAACGTACAACCAATGAACGACGACCCGTTCCAACCAACG
AACGACGACCCGTTCCAACCAACAAACGACGACCCGTATCAACCAATGAA
CGAATCGCTGAATGAATCGACCGACTTGGCAGTTACAAAAGTTCGGCATA
CTGATAATACTATAACCGGGACTACCGCCTCTAAAGTAAAAACGACTGAG
ATGCCTAATGACGATATCACTTTCAAGAGAGAAATTGCTACACAACAGGC
CACCAAGAGAACAACGAAAAATGTAAAGTTTACTAGTGAAGAAGATCGTT
ACTTAAAGCAAGGCATCCAGAAATACGGACCAAAGTCCTGGGCTCTTATT
TTGAAAGACACTTCTTTGAAGTTTCATTCAACAAGAACAAGAGACTCTTT
AAGAGTCAGAGCTGACAGTGCTTGTTTCAGGAAACTTTTTTTATCAAAAT
AGGATTTTATAGATTTTCGAAAAGCAGGTGGTGTTTCTGATAACACTTTA
CGTTTATTCACCGTAGTTGAAGTATATCTAAGGAGAGCAACTGAAAACCT
TCGAAAAAGAAAAAATTTAGAATGCAATCGTAATCTTGACCTGGAAACCC
TTATTGCCAGAAATAGTTGGGCAACATTAGAAGAAATGGAGGAAGTCATT
CCATTCCACATGAAACAGTTTAAAACGGTCATTCAAAAGTGCTCATCGAG
TGAAAAATCAAGATTTCTAACAAAAGGAGAGTTAGTTTTCTCCATTCGAT
TTATAACTACGTTGCTTTTTCTTCGAGTGAAATGCTCAAGACCTATGACT
TTCCAATTCCTCACCGTCGATATGGTCAACAAAGCAAGAACAAATGGTGG
ATTTGTAGATCAAAAGGAGTTTAAAACTGCTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035149-exon-sc0001262-1575043694:47674..48108 | TCONS_00035149-exon-sc0001262-1575043694:47674..48108 | Clytia hemisphaerica | exon |
| TCONS_00035149-exon-sc0001262-1575043694:46175..47439 | TCONS_00035149-exon-sc0001262-1575043694:46175..47439 | Clytia hemisphaerica | exon |
| TCONS_00035149-exon-sc0001262-1510915933:47674..48108 | TCONS_00035149-exon-sc0001262-1510915933:47674..48108 | Clytia hemisphaerica | exon |
| TCONS_00035149-exon-sc0001262-1510915933:46175..47439 | TCONS_00035149-exon-sc0001262-1510915933:46175..47439 | Clytia hemisphaerica | exon |
| TCONS_00035149-exon-sc0001262-1491911889:47674..48108 | TCONS_00035149-exon-sc0001262-1491911889:47674..48108 | Clytia hemisphaerica | exon |
| TCONS_00035149-exon-sc0001262-1491911889:46175..47439 | TCONS_00035149-exon-sc0001262-1491911889:46175..47439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001262 | supercontig | sc0001262:46175..48108 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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