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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034997 ID=TCONS_00034997|Name=TCONS_00034997|organism=Clytia hemisphaerica|type=transcript|length=1847bp
ataaaaaaaaaaaaaattgaactaacataattttaaagaaaatgacAAAA
CGGCAGGGCAGATTGGAATATATCCTTGCTTGTAGAATATTGGGGATAAA
ATGACTTTCGGACATATGCAATATTCATACTATGTAAAAATAATGATAAT
AATAACAACAAAATAAAATAGACAAGAATCGATTTACTACTGTCAGCTCA
TATTTACGGATTGTTAGCAAATAAATATTGAAAACATTTGATATTTTTTT
ATAAGATTGATATCTGAAAGATTTGAACCAGAACTATGACTTGTTATTTA
ACTTAATGACTAAATGACGCATAAATTGATCTTCAGATTAATAACTAAGC
AATAAAAATGTAACCCCATGTTGAATCTTCGACAATAATTCATATAACCC
TGTTAAAAGTTTGTCTTGGAGATGGCTAAGTGCAAATTTCGAGGTAGATC
TTGTACATAATTCCTTAATCTGTTTTCACCGATGTTTGCGAtctgttgtc
attgtcattTTTGTGAATCTCGGAGTGTGGACATTTTATTGGCAAAAACT
ATATATTTCTAGCCAAACACTGATATACAAAGAAAACTAATAATTTTCAT
TGAGAATTATAGAGTACCTCTTAAGTGGGATTTGGCACTGCTTCCCAGTA
TTCGTCAGACGAAAGGCTTACGCGCGAGTCATTACATATAACAGGAGTAA
ATCATAAAATTATATGGTATCATTTGAAAAACGATTAGATGGAACGAAAT
CAAGGATCTAAGTAGATGCTTACGTCAAATAAGTAGAACGACAAAATGCG
TTCCAGATAGAACGATTACTGTATTAAAGATATAATGAATTTCAGGCAAT
TCAATTTCTCAATGTTATTCAATTTATGTtgctttaaagaaaatatacGA
AAATAAATTTAGATAACATGTAATGCGCACCAAAGTACAGTAACGGTGAA
TTCAATAAAATGAAATAGTAGTGTTGATTTATTTGATAacggaaaattat
ttaaaacagaaaaacatttcacatcttaaagctatttcaaatgCAAATAC
TCTTGAAAGAGGCAGGAAGGGTAGAAGTCGAGGGCAGAGATGAAGAAGGG
GCAAAAGTCGAGGGCAGGGATGAAGAAGGGGCAGAAGTCGAGGACAGGGA
TGAACAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGGCAGAAGTTG
AGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGATAGGGATGAAGAAGGG
GCAGAAGTTGAGGACAGGGATGAACAAGGNGACAGAAGTCGAGGGTAGGG
ATGAAGAAGGGGCAGAAGTCGAGGGTAGGGATGAAGAAGCGGCAGAAGTC
GAGGACAGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGG
GGTAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGACAGGG
ATGAAGAAGGGGTAGAAGTTGAGGACAGGGATGAAGAAGGGGCAGAAGTT
GAGGACAGGGATGAAGAAGGGGCAGAAGTCGAGGGCAGGGATGAAGAAGG
GGCAGAAGTCGAGGACAGGGATGAACAAGGGGTAGTAGTTGAGGACAGGG
ATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGGTAGAAGTT
GAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGATAGGGACGAAGAAGG
GGCAGAAGTTGAGGACAGGGATGAACAAGGGGCAGAAGTCGAGGGCGGAA
GAAGAAGGAGTAGGGGTCGGCGTCAGAAGGAAGAGGAGATAGAAGTAGGT
TACTGTCATAGATACAGCTTAAAGCCAACATTCAGCCCATCTCTCGC Run BLAST on NCBI protein sequence of TCONS_00034997-protein >TCONS_00034997-protein ID=TCONS_00034997-protein|Name=TCONS_00034997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MKKGQKSRAGMKKGQKSRTGMNKGQKLRTGMKKGQKLRIGMKKGQKLRIG
MKKGQKLRTGMNKXTEVEGRDEEGAEVEGRDEEAAEVEDRDEQGAEVEDR
DEEGVEVEDRDEEGAEVEDRDEEGVEVEDRDEEGAEVEDRDEEGAEVEGR
DEEGAEVEDRDEQGVVVEDRDEEGAEVEDRDEEGVEVEDRDEEGAEVEDR
DEEGAEVEDRDEQGAEVEGGRRRSRGRRQKEEEIEVGYCHRYSLKPTFSP
SL Run BLAST on NCBI transcript from alignment at sc0001239:18428..20419+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034997 ID=TCONS_00034997|Name=TCONS_00034997|organism=Clytia hemisphaerica|type=transcript|length=1992bp|location=Sequence derived from alignment at sc0001239:18428..20419+ (Clytia hemisphaerica)
ataaaaaaaaaaaaaattgaactaacataattttaaagaaaatgacAAAA
CGGCAGGGCAGATTGGAATATATCCTTGCTTGTAGAATATTGGGGATAAA
ATGACTTTCGGACATATGCAATATTCATACTATGTAAAAATAATGATAAT
AATAACAACAAAATAAAATAGACAAGAATCGATTTACTACTGTCAGCTCA
TATTTACGGATTGTTAGCAAATAAATATTGAAAACATTTGATATTTTTTT
ATAAGATTGATATCTGAAAGATTTGAACCAGAACTATGACTTGTTATTTA
ACTTAATGACTAAATGACGCATAAATTGATCTTCAGATTAATAACTAAGC
AATAAAAATGTAACCCCATGTTGAATCTTCGACAATAATTCATATAACCC
TGTTAAAAGTTTGTCTTGGAGATGGCTAAGTGCAAATTTCGAGGTAGATC
TTGTACATAATTCCTTAATCTGTTTTCACCGATGTTTGCGAtctgttgtc
attgtcattTTTGTGAATCTCGGAGTGTGGACATTTTATTGGCAAAAACT
ATATATTTCTAGCCAAACACTGATATACAAAGAAAACTAATAATTTTCAT
TGAGAATTATAGAGTACCTCTTAAGTGGGATTTGGCACTGCTTCCCAGTA
TTCGTCAGACGAAAGGCTTACGCGCGAGTCATTACATATAACAGGAGTAA
ATCATAAAATTATATGGTATCATTTGAAAAACGATTAGATGGAACGAAAT
CAAGGATCTAAGTAGATGCTTACGTCAAATAAGTAGAACGACAAAATGCG
TTCCAGATAGAACGATTACTGTATTAAAGATATAATGAATTTCAGGCAAT
TCAATTTCTCAATGTTATTCAATTTATGTtgctttaaagaaaatatacGA
AAATAAATTTAGATAACATGTAATGCGCACCAAAGTACAGTAACGGTGAA
TTCAATAAAATGAAATAGTAGTGTTGATTTATTTGATAacggaaaattat
ttaaaacagaaaaacatttcacatcttaaagctatttcaaatgCAAATAC
TCTTGAAAGAGGCANCAATGCGCACCAAAGTACAGTAACGGTGAATTCAA
TAAAATGAAATAGTAGCGTTGATTTATTTGATAacggaaaattatttaaa
acagaaaaacatttcacatcttaaagctatttcaaatgCAAATACTCTTG
AAAGAGGCAGGAAGGGTAGAAGTCGAGGGCAGAGATGAAGAAGGGGCAAA
AGTCGAGGGCAGGGATGAAGAAGGGGCAGAAGTCGAGGACAGGGATGAAC
AAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGGCAGAAGTTGAGGAT
AGGGATGAAGAAGGGGCAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGA
AGTTGAGGACAGGGATGAACAAGGNGACAGAAGTCGAGGGTAGGGATGAA
GAAGGGGCAGAAGTCGAGGGTAGGGATGAAGAAGCGGCAGAAGTCGAGGA
CAGGGATGAACAAGGGGCAGAAGTCGAGGACAGGGATGAAGAAGGGGTAG
AAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAA
GAAGGGGTAGAAGTTGAGGACAGGGATGAAGAAGGGGCAGAAGTTGAGGA
CAGGGATGAAGAAGGGGCAGAAGTCGAGGGCAGGGATGAAGAAGGGGCAG
AAGTCGAGGACAGGGATGAACAAGGGGTAGTAGTTGAGGACAGGGATGAA
GAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGGGGTAGAAGTTGAGGA
TAGGGATGAAGAAGGGGCAGAAGTTGAGGATAGGGACGAAGAAGGGGCAG
AAGTTGAGGACAGGGATGAACAAGGGGCAGAAGTCGAGGGCGGAAGAAGA
AGGAGTAGGGGTCGGCGTCAGAAGGAAGAGGAGATAGAAGTAGGTTACTG
TCATAGATACAGCTTAAAGCCAACATTCAGCCCATCTCTCGC Coding sequence (CDS) from alignment at sc0001239:18428..20419+ >TCONS_00034997 ID=TCONS_00034997|Name=TCONS_00034997|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0001239:18428..20419+ (Clytia hemisphaerica)
ATGAAGAAGGGGCAAAAGTCGAGGGCAGGGATGAAGAAGGGGCAGAAGTC
GAGGACAGGGATGAACAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAGG
GGCAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGATAGGG
ATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAACAAGGNGACAGAAGT
CGAGGGTAGGGATGAAGAAGGGGCAGAAGTCGAGGGTAGGGATGAAGAAG
CGGCAGAAGTCGAGGACAGGGATGAACAAGGGGCAGAAGTCGAGGACAGG
GATGAAGAAGGGGTAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGT
TGAGGACAGGGATGAAGAAGGGGTAGAAGTTGAGGACAGGGATGAAGAAG
GGGCAGAAGTTGAGGACAGGGATGAAGAAGGGGCAGAAGTCGAGGGCAGG
GATGAAGAAGGGGCAGAAGTCGAGGACAGGGATGAACAAGGGGTAGTAGT
TGAGGACAGGGATGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAAGAAG
GGGTAGAAGTTGAGGATAGGGATGAAGAAGGGGCAGAAGTTGAGGATAGG
GACGAAGAAGGGGCAGAAGTTGAGGACAGGGATGAACAAGGGGCAGAAGT
CGAGGGCGGAAGAAGAAGGAGTAGGGGTCGGCGTCAGAAGGAAGAGGAGA
TAGAAGTAGGTTACTGTCATAGATACAGCTTAAAGCCAACATTCAGCCCA
TCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034997-exon-sc0001239-1491911889:18428..19488 | TCONS_00034997-exon-sc0001239-1491911889:18428..19488 | Clytia hemisphaerica | exon |
| TCONS_00034997-exon-sc0001239-1510915933:18428..19488 | TCONS_00034997-exon-sc0001239-1510915933:18428..19488 | Clytia hemisphaerica | exon |
| TCONS_00034997-exon-sc0001239-1575043694:18428..19488 | TCONS_00034997-exon-sc0001239-1575043694:18428..19488 | Clytia hemisphaerica | exon |
| TCONS_00034997-exon-sc0001239-1491911889:19634..20419 | TCONS_00034997-exon-sc0001239-1491911889:19634..20419 | Clytia hemisphaerica | exon |
| TCONS_00034997-exon-sc0001239-1510915933:19634..20419 | TCONS_00034997-exon-sc0001239-1510915933:19634..20419 | Clytia hemisphaerica | exon |
| TCONS_00034997-exon-sc0001239-1575043694:19634..20419 | TCONS_00034997-exon-sc0001239-1575043694:19634..20419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001239 | supercontig | sc0001239:18428..20419 + |
Blast
The following BLAST results are available for this feature:
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