TCONS_00034979 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00034979
Unique Name	TCONS_00034979
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2310

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001237:67171..71529+
coding sequence from alignment at sc0001237:67171..71529+

transcript sequence

>TCONS_00034979 ID=TCONS_00034979|Name=TCONS_00034979|organism=Clytia hemisphaerica|type=transcript|length=2310bp
TCTTTGGATTCTTGGGACTTACCTTTTGCTTATTTTGGAGATGATTGTGC
TAGGTATTGAAGACTTAAATTAAGAATTTCTGCAGGTGTTATCCATGGTT
TAAGTTTGTATCTAACTTTGTTTTGCACAATAATATTTATTTGTATTATA
CATACATTATACAGTTTTGTTTCCTGCAACTCCAGAAGAACTCATTTTTG
GGCTTTTCAGGAAGCTCTAAAAACCCTACcctatcaattttcttgtttAC
TCTTCATATAAAATCAAATTGTCACTAATTTTAGAttgataattaaataa
aaacattttctttggaaatgGTAATTGATAATTTGTTGTCATCATGGATA
AGTATGTATTTGGAATGTATGGCAATGAAGATCAACTAGATAATCATGAC
AGACTTTATAACAAGTTTCTCGATATATTTGTGCTTAACCCAAGAACACA
CATCAAAAGAAGAAGAGCATTGTATACTGACTATGAAGTTCATGTCAAGA
CAAACCATCCAGAATTTGCAATCAAAGATTCTCAAGTACGAAGAAGATAC
TCTGAATTTGCGTGGTTGAAAGCCCGATTGGGAATGAATGACATCATGAT
GACAACTGCACCAAGCCTACCTGGCAAGAAATATGTTGGCCGATTCAAAG
ACCCCTTTCTTATGAAACGCCAGATGGGACTGCAGCATTTCATGAATAAG
GTTGTAGAAGTGAATCCATTTTTGTCTGACCCTGCGCTTCATTTGTTTTT
GCAAACTGAGCTATCAATATCACAAATGGAAAGTTATCTCAAGCACAGTG
TATTGCTAAGTAATATTAGAGACCGTGTAATAGCTGAACAAAAGCTGAGA
GAGCAGAGGAAGAAGAACAATGAAGATAACATGAACGAACTTGCATGTTC
TGATCAAAATTGCCTTTTAACTCGTTCATTATCATTGGACACTATTTTAT
CTCTCCGTAAGGATGAGAAGACAAGTGAGAAAGCTCCTGGGCGTGGCTGG
TCTAATTTTATTGGAGAAAGGNCCTCCGTAAGGATGAGAAAACAAATGAG
AAAGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAGGGGCCAGAG
GAATCAGGTGTTTGCGGATAGAGATGTCATTGATTTTCATCgttttggaT
CTTCAGAGACTTACCATAAAGAATCCAAAAAGACAGCTTGTGTTTTACCA
GGTGGTCAACTACAGCTTGCTGATACTGACGACTCTTGCGACcgagttga
tggttttgaacCGTCAAAACACAGGCGTTCGGCAAGTTGGCATGGAAAAA
CATTAGATATGATTGATTTCTTACTAGACAGTTATGACGTGATTGATATC
GATAAAGCTAGCACTATAGACTCATTTTCAGTATCACAATATTCGAACCC
AAACTCGAACAGCTCTGGCACTCTTGATGATAATGATTCATATAGTGATG
ATGGAATTGAAATTGACATTGATTCACGTTTATCTGAATATACCATCATA
TCTCCTCTTACGTCACCGAATAAGAACGAAATGCCTTATGGGCGTCAATT
ATTAGAAGCTGTTGAAGAATCGTTGAACAATGGACATGATATGGTGCTAA
AATCTCCTACTCCAAGTCTGCGATCTAATGCACCTAAAGTTATCCAACAA
ACTTCAGAGAacacctttgcttcattggatacTGAAGGCTTTCATCATAG
TGATAGTGATAGTTTTAGTTCTTAACAAATTTAtaatacattctttttca
atttttagaaagtttatAATAATTATAGTAATTTAGTATTAAAAAACACC
ATGTCTTTTTTATACAGAGTAAAACACCAGGTATTTTATATTGAATTAAT
TTATTAgttttaaaaaatgcaaaatttttttttttgaaaccatttttaaa
cctttttcaagTCCTCTACAATTCAAAACATACTTTCTAAAAAATAAGTA
ACTTTTTCACCCTTAAAAGTTTTTGATCAGTTATTATGAATTTGCCACGA
GCCTTTGAGTCTGTTTGAGTAAGGATTCACAAGTAACAACATTAGAatct
cttaaaatgtttttcctcaaatatttattatagtatagaattttcaaatt
atttttttaactttcattaATTTCTTACCTACATTTGACATTTTTATAGA
TGCATCAGATTTGGGGGGGCTAACTTTAGTTACATGTAGATTAGAGTTAG
TATAAAAAAGGAAATTAAAGCTTTGCTTGTGTGAGTTTTATACTGAAAAC
AcacttaaaatttcttttttatgtaCATTATTTAAGAATTTTACGTTCAT
GAAATAAAAC

Run BLAST on NCBI

protein sequence of TCONS_00034979-protein

>TCONS_00034979-protein ID=TCONS_00034979-protein|Name=TCONS_00034979-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MDKYVFGMYGNEDQLDNHDRLYNKFLDIFVLNPRTHIKRRRALYTDYEVH
VKTNHPEFAIKDSQVRRRYSEFAWLKARLGMNDIMMTTAPSLPGKKYVGR
FKDPFLMKRQMGLQHFMNKVVEVNPFLSDPALHLFLQTELSISQMESYLK
HSVLLSNIRDRVIAEQKLREQRKKNNEDNMNELACSDQNCLLTRSLSLDT
ILSLRKDEKTSEKAPGRGWSNFIGERXSVRMRKQMRKLLGVAGLILLEKG
ARGIRCLRIEMSLIFIVLDLQRLTIKNPKRQLVFYQVVNYSLLILTTLAT
ELMVLNRQNTGVRQVGMEKH

Run BLAST on NCBI

transcript from alignment at sc0001237:67171..71529+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00034979 ID=TCONS_00034979|Name=TCONS_00034979|organism=Clytia hemisphaerica|type=transcript|length=4359bp|location=Sequence derived from alignment at sc0001237:67171..71529+ (Clytia hemisphaerica)
TCTTTGGATTCTTGGGACTTACCTTTTGCTTATTTTGGAGATGATTGTGC
TAGGTATTGAAGACTTAAATTAAGAATTTCTGCAGGTGTTATCCATGGTT
TAAGTTTGTATCTAACTTTGTTTTGCACAATAATATTTATTTGTATTATA
CATACATTATACAGTTTTGTTTCCTGCAACTCCAGAAGAACTCATTTTTG
GGCTTTTCAGGAAGCTCTAAAAACCCTACcctatcaattttcttgtttAC
TCTTCATATAAAATCAAATTGTCACTAATTTTAGAttgataattaaataa
aaacattttctttggaaatgGTAATTGATAATTTGTTGTCATCATGGATA
AGTATGTATTTGGAATGTATGGCAATGAAGATCAACTAGATAATCATGAC
AGACTTTATAACAAGGTAAAGTAATATAATATCGGATTTATTTTCTTGCA
ACATTGATTGATTCTAACTGAACATTTTAACTGAACATTCAAAAAGACAA
AGAGAATGGTCTAGGGCTAGTAATGTATAATACTTCAAATCATTTCCACT
CTATTCTTACTTTAGTTTCTCGATATATTTGTGCTTAACCCAAGAACACA
CATCAAAAGAAGAAGAGCATTGTATACTGACTATGAAGTTCATGTCAAGG
TGAAATTGAAAGTTTCCTGTTTATACTATTTTGAATACATAGCGTCAGCC
TATGTTTAgatcccaggcaaaaattagccCGCCTGAGTTTTCAGTCCCCC
AAATATTCATGGATTTTTTTGTAGCCCCCAGGCTTTTTACCCTCAacact
ttcaaaaatttgttcTACCAAAAAAGTGTTATTCAATGTAAATTATGTTG
CAGTTCTAAGCTTAAGATAAGATATTTTGCTCATTTTATATGAAAATATT
GCGCCACAGGCAAAAGTTTTCAGCTTCACAAGCTTTGATTTGAGTAATTG
ACGCCAACCATTAAGCTGAAGTAATCAAAGTAATCAAGTAAAGTAGTAGA
CTTTTGGAGCGTAACTTCCCCCCGCCACTTTCCAGGGGGGAGTGATGGTC
AGGAATATTCTCTAAAAAGACGAATGATTCTCATTTAATTACAGTTTATA
GAAATTaaagcgatttttaaatacttttctttttacaaTTAGTGCTTCAA
CTTTTTATTTACCATTCAAGTTTATTATTATATTTATCGTGACTACAGTA
ACTCTGGTTCTTAGGCCGATAAAACTGGTAGCaatatatttcaaattatt
gaataacatgtttttttaatagACAAACCATCCAGAATTTGCAATCAAAG
ATTCTCAAGTACGAAGAAGATACTCTGAATTTGCGTGGTTGAAAGCCCGA
TTGGGAATGAATGACATCATGATGACGTAAGTATTGGAGAATTTTAAGAT
AATAGTATGAATTTTAACAGTGCTTTTAGGATCCCAAATATGTATTACAT
AGACGTAGAATTGTTGATAAAAATAGACCAATTTCAGTGTAGTTTATTTG
TTGAAATTGCCCAGCTATACCTTTTgtcacaaaactttttttataatatc
tttccttactgcaaaatattttgatgacaTCAACAAACAACTCCTTCAAA
ACATTGGCCTagaaaaaaattgctataaGCAGACATGAATTTTGAGGCCG
ATTTCATatcttataacaaaacaaatcaaagcAGATCAAAGGGAGTACTA
CTCACGTAATGCCAAATGTCCCATCGTTCAAAGACAATTCTTTCTCGGCT
ACCGTTTATTCAATATCAATCTTTCACCAATGAGTCTTTAACCTATTTTG
TATATTATCTTTATTtcacattttagatttttaatctAATAATAAGGATT
CTTTGTTTCAAAAAGAAGctattttttagatttctacATTTTCATTCTAT
AGAACTGCACCAAGCCTACCTGGCAAGAAATATGTTGGCCGATTCAAAGA
CCCCTTTCTTATGAAACGCCAGATGGGACTGCAGCATTTCATGAATAAGT
TTGTTTGTTTCTATATTTAATTTGTATTTAATGTATTGTCAGGTTAGCAG
AATGACatttgaaaaaatctcaaatactATATCTTCCGTCCAGGGTTATG
GGTGAATTGTGTCTTTTTTAATCCATGTTTGGGCTTGTCATGCTTCTCAC
ATCTCGTCTTCCTAATCTAATCTTCCTAATGTGTCTCATTTAAGTTAACA
GGTTACAGTATATTAATTCTTTATCCTACACAATAACAATATTTTAttac
tttcatttcattttccaGGGTTGTAGAAGTGAATCCATTTTTGTCTGACC
CTGCGCTTCATTTGTTTTTGCAAACTGAGCTATCAATATCACAAATGGAA
AGTTATCTCAAGCACAGTGTATTGCTAAGTAATATTAGAGACCGTGTAAT
AGCTGAACAAAAGCTGAGAGAGCAGAGGAAGAAGAACAATGAAGATAACA
TGAACGAACTTGCATGTTCTGATCAAAATTGCCTTTTAACTCGTTCATTA
TCATTGGACACTATTTTATCTCTCCGTAAGGATGAGAAGACAAGTGAGAA
AGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAGGNCCTCCGTAA
GGATGAGAAAACAAATGAGAAAGCTCCTGGGCGTGGCTGGTCTAATTTTA
TTGGAGAAAGGGGCCAGAGGAATCAGGTGTTTGCGGATAGAGATGTCATT
GATTTTCATCGTAAGTTTTCACACTCATATTTTTCACGCACTACGTAATT
TTCTTCATACAtttattaccttaagggaacttattttggcgggaactaat
tttggcgggcagcaaatatcctaaaatcttttaattttggcgggaacttc
ttttggcgaatagtgaatttttttaattttggcgggaactaatccgccaa
atccaccaaaattagttcctgccaaaataagttcccttaaggtatattaA
GATTGCTTTTAGGAATCCCCCCTGTTGTTTTACTTTGGAAATGTCGATGA
ACTCAAATTTCTCTTTTGAATGTtacaggaaaaaagaaaaagattagaCA
GTGTTGCATGGCTAGGCATCTATTTTCGTgattttctgcaaaaaaaattc
ggTAAATTTATTATTCTATTATTGAATCTACAATACAATAAAGGGCTGGA
TGTGATCGTTGCAtgtaatttattgtttttattttcaaaggttttggaTC
TTCAGAGACTTACCATAAAGAATCCAAAAAGACAGCTTGTGTTTTACCAG
GTGGTCAACTACAGCTTGCTGATACTGACGACTCTTGCGACcgagttgat
ggttttgaacCGTCAAAACACAGGCGTTCGGCAAGTTGGCATGGAAAAAC
ATTAGATATGATTGATTTCTTACTAGACAGTTATGACGTGATTGATATCG
ATAAAGCTAGCACTATAGACTCATTTTCAGTATCACAATATTCGAACCCA
AACTCGAACAGCTCTGGCACTCTTGATGATAATGATTCATATAGTGATGA
TGGAATTGAAATTGACATTGATTCACGTTTATCTGAATATACCATCATAT
CTCCTCTTACGTCACCGAATAAGAACGAAATGCCTTATGGGCGTCAATTA
TTAGAAGCTGTTGAAGAATCGTTGAACAATGGACATGATATGGTGCTAAA
ATCTCCTACTCCAAGTCTGCGATCTAATGCACCTAAAGTTATCCAACAAA
CTTCAGAGAacacctttgcttcattggatacTGAAGGCTTTCATCATAGT
GATAGTGATAGTTTTAGTTCTTAACAAATTTAtaatacattctttttcaa
tttttagaaagtttatAATAATTATAGTAATTTAGTATTAAAAAACACCA
TGTCTTTTTTATACAGAGTAAAACACCAGGTATTTTATATTGAATTAATT
TATTAgttttaaaaaatgcaaaatttttttttttgaaaccatttttaaac
ctttttcaagTCCTCTACAATTCAAAACATACTTTCTAAAAAATAAGTAA
CTTTTTCACCCTTAAAAGTTTTTGATCAGTTATTATGAATTTGCCACGAG
CCTTTGAGTCTGTTTGAGTAAGGATTCACAAGTAACAACATTAGAatctc
ttaaaatgtttttcctcaaatatttattatagtatagaattttcaaatta
tttttttaactttcattaATTTCTTACCTACATTTGACATTTTTATAGAT
GCATCAGATTTGGGGGGGCTAACTTTAGTTACATGTAGATTAGAGTTAGT
ATAAAAAAGGAAATTAAAGCTTTGCTTGTGTGAGTTTTATACTGAAAACA
cacttaaaatttcttttttatgtaCATTATTTAAGAATTTTACGTTCATG
AAATAAAAC

Coding sequence (CDS) from alignment at sc0001237:67171..71529+

>TCONS_00034979 ID=TCONS_00034979|Name=TCONS_00034979|organism=Clytia hemisphaerica|type=CDS|length=5778bp|location=Sequence derived from alignment at sc0001237:67171..71529+ (Clytia hemisphaerica)
ATGGATAAGTATGTATTTGGAATGTATGGCAATGAAGATCAACTAGATAA
TCATGACAGACTTTATAACAAGTTTCTCGATATATTTGTGCTTAACCCAA
GAACACACATCAAAAGAAGAAGAGCATTGTATACTGACTATGAAGTTCAT
GTCAAGACAAACCATCCAGAATTTGCAATCAAAGATTCTCAAGTACGAAG
AAGATACTCTGAATTTGCGTGGTTGAAAGCCCGATTGGGAATGAATGACA
TCATGATGACAACTGCACCAAGCCTACCTGGCAAGAAATATGTTGGCCGA
TTCAAAGACCCCTTTCTTATGAAACGCCAGATGGGACTGCAGCATTTCAT
GAATAAGGTTGTAGAAGTGAATCCATTTTTGTCTGACCCTGCGCTTCATT
TGTTTTTGCAAACTGAGCTATCAATATCACAAATGGAAAGTTATCTCAAG
CACAGTGTATTGCTAAGTAATATTAGAGACCGTGTAATAGCTGAACAAAA
GCTGAGAGAGCAGAGGAAGAAGAACAATGAAGATAACATGAACGAACTTG
CATGTTCTGATCAAAATTGCCTTTTAACTCGTTCATTATCATTGGACACT
ATTTTATCTCTCCGTAAGGATGAGAAGACAAGTGAGAAAGCTCCTGGGCG
TGGCTGGTCTAATTTTATTGGAGAAAGGNCCTCCGTAAGGATGAGAAAAC
AAATGAGAAAGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAGGG
GCCAGAGGAATCAGGTGTTTGCGGATAGAGATGTCATTGATTTTCATCgt
tttggaTCTTCAGAGACTTACCATAAAGAATCCAAAAAGACAGCTTGTGT
TTTACCAGGTGGTCAACTACAGCTTGCTGATACTGACGACTCTTGCGACc
gagttgatggttttgaacCGTCAAAACACAGGCGTTCGGCAAGTTGGCAT
GGAAAAACATTAGATGGATAAGTATGTATTTGGAATGTATGGCAATGAAG
ATCAACTAGATAATCATGACAGACTTTATAACAAGTTTCTCGATATATTT
GTGCTTAACCCAAGAACACACATCAAAAGAAGAAGAGCATTGTATACTGA
CTATGAAGTTCATGTCAAGACAAACCATCCAGAATTTGCAATCAAAGATT
CTCAAGTACGAAGAAGATACTCTGAATTTGCGTGGTTGAAAGCCCGATTG
GGAATGAATGACATCATGATGACAACTGCACCAAGCCTACCTGGCAAGAA
ATATGTTGGCCGATTCAAAGACCCCTTTCTTATGAAACGCCAGATGGGAC
TGCAGCATTTCATGAATAAGGTTGTAGAAGTGAATCCATTTTTGTCTGAC
CCTGCGCTTCATTTGTTTTTGCAAACTGAGCTATCAATATCACAAATGGA
AAGTTATCTCAAGCACAGTGTATTGCTAAGTAATATTAGAGACCGTGTAA
TAGCTGAACAAAAGCTGAGAGAGCAGAGGAAGAAGAACAATGAAGATAAC
ATGAACGAACTTGCATGTTCTGATCAAAATTGCCTTTTAACTCGTTCATT
ATCATTGGACACTATTTTATCTCTCCGTAAGGATGAGAAGACAAGTGAGA
AAGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAGGNCCTCCGTA
AGGATGAGAAAACAAATGAGAAAGCTCCTGGGCGTGGCTGGTCTAATTTT
ATTGGAGAAAGGGGCCAGAGGAATCAGGTGTTTGCGGATAGAGATGTCAT
TGATTTTCATCgttttggaTCTTCAGAGACTTACCATAAAGAATCCAAAA
AGACAGCTTGTGTTTTACCAGGTGGTCAACTACAGCTTGCTGATACTGAC
GACTCTTGCGACcgagttgatggttttgaacCGTCAAAACACAGGCGTTC
GGCAAGTTGGCATGGAAAAACATTAGATGGATAAGTATGTATTTGGAATG
TATGGCAATGAAGATCAACTAGATAATCATGACAGACTTTATAACAAGTT
TCTCGATATATTTGTGCTTAACCCAAGAACACACATCAAAAGAAGAAGAG
CATTGTATACTGACTATGAAGTTCATGTCAAGACAAACCATCCAGAATTT
GCAATCAAAGATTCTCAAGTACGAAGAAGATACTCTGAATTTGCGTGGTT
GAAAGCCCGATTGGGAATGAATGACATCATGATGACAACTGCACCAAGCC
TACCTGGCAAGAAATATGTTGGCCGATTCAAAGACCCCTTTCTTATGAAA
CGCCAGATGGGACTGCAGCATTTCATGAATAAGGTTGTAGAAGTGAATCC
ATTTTTGTCTGACCCTGCGCTTCATTTGTTTTTGCAAACTGAGCTATCAA
TATCACAAATGGAAAGTTATCTCAAGCACAGTGTATTGCTAAGTAATATT
AGAGACCGTGTAATAGCTGAACAAAAGCTGAGAGAGCAGAGGAAGAAGAA
CAATGAAGATAACATGAACGAACTTGCATGTTCTGATCAAAATTGCCTTT
TAACTCGTTCATTATCATTGGACACTATTTTATCTCTCCGTAAGGATGAG
AAGACAAGTGAGAAAGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGA
AAGGNCCTCCGTAAGGATGAGAAAACAAATGAGAAAGCTCCTGGGCGTGG
CTGGTCTAATTTTATTGGAGAAAGGGGCCAGAGGAATCAGGTGTTTGCGG
ATAGAGATGTCATTGATTTTCATCgttttggaTCTTCAGAGACTTACCAT
AAAGAATCCAAAAAGACAGCTTGTGTTTTACCAGGTGGTCAACTACAGCT
TGCTGATACTGACGACTCTTGCGACcgagttgatggttttgaacCGTCAA
AACACAGGCGTTCGGCAAGTTGGCATGGAAAAACATTAGATGGATAAGTA
TGTATTTGGAATGTATGGCAATGAAGATCAACTAGATAATCATGACAGAC
TTTATAACAAGTTTCTCGATATATTTGTGCTTAACCCAAGAACACACATC
AAAAGAAGAAGAGCATTGTATACTGACTATGAAGTTCATGTCAAGACAAA
CCATCCAGAATTTGCAATCAAAGATTCTCAAGTACGAAGAAGATACTCTG
AATTTGCGTGGTTGAAAGCCCGATTGGGAATGAATGACATCATGATGACA
ACTGCACCAAGCCTACCTGGCAAGAAATATGTTGGCCGATTCAAAGACCC
CTTTCTTATGAAACGCCAGATGGGACTGCAGCATTTCATGAATAAGGTTG
TAGAAGTGAATCCATTTTTGTCTGACCCTGCGCTTCATTTGTTTTTGCAA
ACTGAGCTATCAATATCACAAATGGAAAGTTATCTCAAGCACAGTGTATT
GCTAAGTAATATTAGAGACCGTGTAATAGCTGAACAAAAGCTGAGAGAGC
AGAGGAAGAAGAACAATGAAGATAACATGAACGAACTTGCATGTTCTGAT
CAAAATTGCCTTTTAACTCGTTCATTATCATTGGACACTATTTTATCTCT
CCGTAAGGATGAGAAGACAAGTGAGAAAGCTCCTGGGCGTGGCTGGTCTA
ATTTTATTGGAGAAAGGNCCTCCGTAAGGATGAGAAAACAAATGAGAAAG
CTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAGGGGCCAGAGGAAT
CAGGTGTTTGCGGATAGAGATGTCATTGATTTTCATCgttttggaTCTTC
AGAGACTTACCATAAAGAATCCAAAAAGACAGCTTGTGTTTTACCAGGTG
GTCAACTACAGCTTGCTGATACTGACGACTCTTGCGACcgagttgatggt
tttgaacCGTCAAAACACAGGCGTTCGGCAAGTTGGCATGGAAAAACATT
AGATGGATAAGTATGTATTTGGAATGTATGGCAATGAAGATCAACTAGAT
AATCATGACAGACTTTATAACAAGTTTCTCGATATATTTGTGCTTAACCC
AAGAACACACATCAAAAGAAGAAGAGCATTGTATACTGACTATGAAGTTC
ATGTCAAGACAAACCATCCAGAATTTGCAATCAAAGATTCTCAAGTACGA
AGAAGATACTCTGAATTTGCGTGGTTGAAAGCCCGATTGGGAATGAATGA
CATCATGATGACAACTGCACCAAGCCTACCTGGCAAGAAATATGTTGGCC
GATTCAAAGACCCCTTTCTTATGAAACGCCAGATGGGACTGCAGCATTTC
ATGAATAAGGTTGTAGAAGTGAATCCATTTTTGTCTGACCCTGCGCTTCA
TTTGTTTTTGCAAACTGAGCTATCAATATCACAAATGGAAAGTTATCTCA
AGCACAGTGTATTGCTAAGTAATATTAGAGACCGTGTAATAGCTGAACAA
AAGCTGAGAGAGCAGAGGAAGAAGAACAATGAAGATAACATGAACGAACT
TGCATGTTCTGATCAAAATTGCCTTTTAACTCGTTCATTATCATTGGACA
CTATTTTATCTCTCCGTAAGGATGAGAAGACAAGTGAGAAAGCTCCTGGG
CGTGGCTGGTCTAATTTTATTGGAGAAAGGNCCTCCGTAAGGATGAGAAA
ACAAATGAGAAAGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAG
GGGCCAGAGGAATCAGGTGTTTGCGGATAGAGATGTCATTGATTTTCATC
gttttggaTCTTCAGAGACTTACCATAAAGAATCCAAAAAGACAGCTTGT
GTTTTACCAGGTGGTCAACTACAGCTTGCTGATACTGACGACTCTTGCGA
CcgagttgatggttttgaacCGTCAAAACACAGGCGTTCGGCAAGTTGGC
ATGGAAAAACATTAGATGGATAAGTATGTATTTGGAATGTATGGCAATGA
AGATCAACTAGATAATCATGACAGACTTTATAACAAGTTTCTCGATATAT
TTGTGCTTAACCCAAGAACACACATCAAAAGAAGAAGAGCATTGTATACT
GACTATGAAGTTCATGTCAAGACAAACCATCCAGAATTTGCAATCAAAGA
TTCTCAAGTACGAAGAAGATACTCTGAATTTGCGTGGTTGAAAGCCCGAT
TGGGAATGAATGACATCATGATGACAACTGCACCAAGCCTACCTGGCAAG
AAATATGTTGGCCGATTCAAAGACCCCTTTCTTATGAAACGCCAGATGGG
ACTGCAGCATTTCATGAATAAGGTTGTAGAAGTGAATCCATTTTTGTCTG
ACCCTGCGCTTCATTTGTTTTTGCAAACTGAGCTATCAATATCACAAATG
GAAAGTTATCTCAAGCACAGTGTATTGCTAAGTAATATTAGAGACCGTGT
AATAGCTGAACAAAAGCTGAGAGAGCAGAGGAAGAAGAACAATGAAGATA
ACATGAACGAACTTGCATGTTCTGATCAAAATTGCCTTTTAACTCGTTCA
TTATCATTGGACACTATTTTATCTCTCCGTAAGGATGAGAAGACAAGTGA
GAAAGCTCCTGGGCGTGGCTGGTCTAATTTTATTGGAGAAAGGNCCTCCG
TAAGGATGAGAAAACAAATGAGAAAGCTCCTGGGCGTGGCTGGTCTAATT
TTATTGGAGAAAGGGGCCAGAGGAATCAGGTGTTTGCGGATAGAGATGTC
ATTGATTTTCATCgttttggaTCTTCAGAGACTTACCATAAAGAATCCAA
AAAGACAGCTTGTGTTTTACCAGGTGGTCAACTACAGCTTGCTGATACTG
ACGACTCTTGCGACcgagttgatggttttgaacCGTCAAAACACAGGCGT
TCGGCAAGTTGGCATGGAAAAACATTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020365	XLOC_020365	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00034979-protein	TCONS_00034979-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001237	supercontig	sc0001237:67171..71529 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.30968	2.60173	1.22364	1.19714	16.8056	13.0821	8.42339	10.2842	7.45632	8.56608	6.44968	4.64462	5.78367	5.57487	6.94207	6.7399	7.2889	5.06721	4.05677	5.86052	4.68569	4.03748	17.2509	14.7155	3.28151	4.02894	7.43251	5.16456	12.4636	13.1758

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001683	Phox

Vocabulary: **Molecular Function**
Term	Definition
GO:0035091	phosphatidylinositol binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0035091	phosphatidylinositol binding

Blast

[Close]

BLAST of TCONS_00034979 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.762e-21
Identity = 50/128 (39.06%), Postives = 74/128 (57.81%), Query Frame = 2

Query:  410 NKFLDIFVLNPRTHIKRRRALYTDYEVHVKTNHPEFAIKDSQVRRRYSEFAWLKARLGMNDIMMTTAPSLPGKKYVGRFKDPFLMKRQMGLQHFMNKVVEVNPFLSDPALHLFLQTELSISQMESYLK 793
             + + + V +PR   +     Y DY++ + TN   F  K S VRRRY EF WL+ +L  N   +   P LPGK       D F+ KR+ GLQHF+ KV++    LSD  LHLFLQ++LS+ ++E+ ++
Sbjct:   14 EEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRN-AGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQ 140

The following BLAST results are available for this feature:

BLAST of TCONS_00034979 vs. Swiss-Prot (Human)

BLAST of TCONS_00034979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SNX11	1.762e-21	39.06	Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=...	[more]

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TCONS_00034979 (transcript) - C. hemisphaerica