TCONS_00034964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034964
Unique NameTCONS_00034964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034964 ID=TCONS_00034964|Name=TCONS_00034964|organism=Clytia hemisphaerica|type=transcript|length=773bp
TCAAATGAACTTGGATAGAACTTGAAAGGAAGCAAAGAAAACAACTTTGG
ATTCAAGATATAACTACTATGGGTTTCATATTAACATGCGCTCTTCTTAT
AGtGGTTATTGGAGCAGCCAAAACATCAGATGGTGATGATTCATTGACGT
ACAAAAATTGTCGTGATTCTTTATGTGCAAGACGTGCAGATGGAAATTAT
GGTATAAAAGATGCACCAAATCATTTCGTCTCATGTGTCAATAAGAAAGC
CTATTGTCAACACTGTTGGCCCAGTACTTTGGTTTACAAAGAAGAATGCA
ACCAATGCACTTACACTTTGAAAGACGAATGCCAAACAACACACGCTATA
GTTGCTCCACCTCGACGGGAAGGCGATAAAGAAATCATCTGTCCGGATAT
ATGTGTTAAAAAAGGACCAAAATTCGACGGGAATATCGCGAATCCGAATT
ACAAAGGACATTACGTGGCTTGTTGGAAAGGCATGACTGTGGGATGTATC
GATTGTCCTGGTGATCTCCTGTTCAATGAGAAAGAACAAGCTTGTTTGTA
TGACGGCAAATTTATGACTGAACCGATGAAGAATTGATTTCTAtttgctt
attttttacttatttaGATCTTTTCACTTgtaacattttaagaacaatta
aaactttgtgatttcaaaaacgaattcgattattattttttggGCTTAAT
TTGGGAATAGGtgacatttttatattttggtataattttttagaaatata
ctACAGCTACAGACAGGAAACAA
Run BLAST on NCBI

protein sequence of TCONS_00034964-protein

>TCONS_00034964-protein ID=TCONS_00034964-protein|Name=TCONS_00034964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MGFILTCALLIVVIGAAKTSDGDDSLTYKNCRDSLCARRADGNYGIKDAP
NHFVSCVNKKAYCQHCWPSTLVYKEECNQCTYTLKDECQTTHAIVAPPRR
EGDKEIICPDICVKKGPKFDGNIANPNYKGHYVACWKGMTVGCIDCPGDL
LFNEKEQACLYDGKFMTEPMKN
Run BLAST on NCBI

transcript from alignment at sc0001236:68495..71211+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034964 ID=TCONS_00034964|Name=TCONS_00034964|organism=Clytia hemisphaerica|type=transcript|length=2717bp|location=Sequence derived from alignment at sc0001236:68495..71211+ (Clytia hemisphaerica)
TCAAATGAACTTGGATAGAACTTGAAAGGAAGCAAAGAAAACAACTTTGG
ATTCAAGATATAACTACTATGGGTTTCATATTAACATGCGCTCTTCTTAT
AGGTAAGCATTAATCGATTGACATCAGATGAACAGTATTGTTTTTTATCG
GTCCATTTCAAGAATTCTCAGTAACCTTAAAGAAGATTTTGCCACTAttc
aaatatttgaaattttcaaacgcttgtatttttggtcaaaattcttcaaC
TGACAAAATTGGCTAATGTGAAGCACACATTTTCGGAATTGTCCAGGTCC
ggtggaagcggggagactggggagaatttagcctccccactttttagcaa
atgagatttttttttctcaaattcctctcattttgagccttcagtcTCCC
CCACTTcgacggttgttccgccgggcctgtcatcatgaaaaataaaagat
ttcttcaatttagtttgtttttattgacaaAAGGATTTTAGATTAGGTTT
GAAAGTTAagaattctttttatttcagtGGTTATTGGAGCAGCCAAAACA
TCAGATGGTGATGATTCATTGACGTACAAAAATTGTAAGTTCATTTCAAG
TCTATATTACGAAAAAATAAGGGGTCGTTCGACGGTGAAATGGGGTTGGC
CCTTTTTTGGTTgctattttggtgttttaagGAAAGAATAGCCTGTATTT
CGGTGATTCTATAAAAGATCATCAGTATTTCGGTGTCTGGGAGCCAACGT
ACGTCCCTCACTATAcgtaaataaaagttaaaactGTACACCTTTACAGA
CTTAGTTTCGGTATCAAACTGAAAGAATATTTTCTCAACtcttcaataaa
attttttgatcgggtagaagaaagaaaattttggatgGGCGTTAAAAAGT
CGGGCGGGGGTGCTTGGTAAATCTCTTAAATATATAGTCACTTCCAAACC
TTTTCCCAAATAGGGAGACATTCTTCCACAAGcagcaatagacgatatcg
gcttaacgaaattctccccgaatgattacccatgatgcattgcgcaaaaa
agttcagtaagtcaatattgtccgtgaatgcatcatgggtaatcattcgg
ggagaattcggaaagccgatatcgtctattgaccAGTTAAATTCATGATG
TCCAAAAGGTTATGTAACGGAAACACCCCGGTTTTCGCAAGTTTAGAATT
TGTCGTTATTGGCAAAAACCAGGGTGTTACCGTAGAAAGCATTAAGTGAT
GAATATACACAAAGATGATCTATTTCAGGTCGTGATTCTTTATGTGCAAG
ACGTGCAGATGGAAATTATGGTATAAAAGATGCACCAAATCATTTCGTCT
CATGTGTCAATAAGAAAGCCTATTGTCAACACTGTTGGCCCAGTACTTTG
GTTTACAAAGAAGAATGCAACCAATGCACTTACACTTTGAAAGGTTAGAC
TCAACTCTACTTTAGACGGCCGATTTTCTGCCCTGACTATTCTATTTGTT
ACAGGACGCAAAAAGTAGGCGGAAaattggcagttaaaatctttgcttga
aatttATTTGCACCAATTGGAATTAAAGTTACATAAAAAGGAACAAACAC
CCAAGGGAATGGGCTCTCAAGTGAAGTGACTTATCATAGGTGCGGccaat
gaagtaaaagcccgaagggctagaatcgaatcttctTGGTAGCATTTGAA
GCCaataaatcctaccaaagttgcgtggTCTAGCGCGACCCGCCTAGTTT
TTGCACAAATGctagattgaaactaaaatttacagtTAGATTTCGAAAAT
GATATTACTCGAAAACAAAGGtatcgctagattcaatctgtcgtcaaaaa
tacggcgcacaTTTTAAGGCTCCACTCTTTCCTCCCTGTGAGAAATAAGG
TTAAAGAttcacttctagcccttcgggcttatacttcaatGGTGGGATGA
CAAGGATGCGTTTTCAGGTTTCCTAAAATGCAATGTAAAGGTCGAAATGA
GAGAAAGAGCACTCTAAGGGTTTAAAAAGTGAATAaacgaattttggcaa
aatatagGAAAACCTGTTCAAGAAAATACATCGTAAAGGAtcaatttttc
accaaaaactgaaatttaggtgaaattttctctgcactgccAGGTTCCTA
TTTTCAAGGCCTAATTTTGGACGTTTTAAATTGAGCCCCCTTCTGAAAAC
TTTTAAGCCATTAGCTTTTCAATTTAGACATACTGTAAAAAATCTACCTT
TGATTTCTTCTCAAAAAGACGAATGCCAAACAACACACGCTATAGTTGCT
CCACCTCGACGGGAAGGCGATAAAGAAATCATCTGTCCGGATATATGTGT
TAAAAAAGGACCAAAATTCGACGGGAATATCGCGAATCCGAATTACAAAG
GACATTACGTGGCTTGTTGGAAAGGCATGACTGTGGGATGTATCGATTGT
CCTGGTGATCTCCTGTTCAATGAGAAAGAACAAGCTTGTTTGTATGACGG
CAAATTTATGACTGAACCGATGAAGAATTGATTTCTAtttgcttattttt
tacttatttaGATCTTTTCACTTgtaacattttaagaacaattaaaactt
tgtgatttcaaaaacgaattcgattattattttttggGCTTAATTTGGGA
ATAGGtgacatttttatattttggtataattttttagaaatatactACAG
CTACAGACAGGAAACAA

Coding sequence (CDS) from alignment at sc0001236:68495..71211+

>TCONS_00034964 ID=TCONS_00034964|Name=TCONS_00034964|organism=Clytia hemisphaerica|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0001236:68495..71211+ (Clytia hemisphaerica)
ATGGGTTTCATATTAACATGCGCTCTTCTTATAGtGGTTATTGGAGCAGC
CAAAACATCAGATGGTGATGATTCATTGACGTACAAAAATTGTCGTGATT
CTTTATGTGCAAGACGTGCAGATGGAAATTATGGTATAAAAGATGCACCA
AATCATTTCGTCTCATGTGTCAATAAGAAAGCCTATTGTCAACACTGTTG
GCCCAGTACTTTGGTTTACAAAGAAGAATGCAACCAATGCACTTACACTT
TGAAAGACGAATGCCAAACAACACACGCTATAGTTGCTCCACCTCGACGG
GAAGGCGATAAAGAAATCATCTGTCCGGATATATGTGTTAAAAAAGGACC
AAAATTCGACGGGAATATCGCGAATCCGAATTACAAAGGACATTACGTGG
CTTGTTGGAAAGGCATGACTGTGGGATGTATCGATTGTCCTGGTGATCTC
CTGTTCAATGAGAAAGAACAAGCTTGTTTGTATGACGGCAAATTTATGAC
TGAACCGATGAAGAATTGAATGGGTTTCATATTAACATGCGCTCTTCTTA
TAGtGGTTATTGGAGCAGCCAAAACATCAGATGGTGATGATTCATTGACG
TACAAAAATTGTCGTGATTCTTTATGTGCAAGACGTGCAGATGGAAATTA
TGGTATAAAAGATGCACCAAATCATTTCGTCTCATGTGTCAATAAGAAAG
CCTATTGTCAACACTGTTGGCCCAGTACTTTGGTTTACAAAGAAGAATGC
AACCAATGCACTTACACTTTGAAAGACGAATGCCAAACAACACACGCTAT
AGTTGCTCCACCTCGACGGGAAGGCGATAAAGAAATCATCTGTCCGGATA
TATGTGTTAAAAAAGGACCAAAATTCGACGGGAATATCGCGAATCCGAAT
TACAAAGGACATTACGTGGCTTGTTGGAAAGGCATGACTGTGGGATGTAT
CGATTGTCCTGGTGATCTCCTGTTCAATGAGAAAGAACAAGCTTGTTTGT
ATGACGGCAAATTTATGACTGAACCGATGAAGAATTGAATGGGTTTCATA
TTAACATGCGCTCTTCTTATAGtGGTTATTGGAGCAGCCAAAACATCAGA
TGGTGATGATTCATTGACGTACAAAAATTGTCGTGATTCTTTATGTGCAA
GACGTGCAGATGGAAATTATGGTATAAAAGATGCACCAAATCATTTCGTC
TCATGTGTCAATAAGAAAGCCTATTGTCAACACTGTTGGCCCAGTACTTT
GGTTTACAAAGAAGAATGCAACCAATGCACTTACACTTTGAAAGACGAAT
GCCAAACAACACACGCTATAGTTGCTCCACCTCGACGGGAAGGCGATAAA
GAAATCATCTGTCCGGATATATGTGTTAAAAAAGGACCAAAATTCGACGG
GAATATCGCGAATCCGAATTACAAAGGACATTACGTGGCTTGTTGGAAAG
GCATGACTGTGGGATGTATCGATTGTCCTGGTGATCTCCTGTTCAATGAG
AAAGAACAAGCTTGTTTGTATGACGGCAAATTTATGACTGAACCGATGAA
GAATTGAATGGGTTTCATATTAACATGCGCTCTTCTTATAGtGGTTATTG
GAGCAGCCAAAACATCAGATGGTGATGATTCATTGACGTACAAAAATTGT
CGTGATTCTTTATGTGCAAGACGTGCAGATGGAAATTATGGTATAAAAGA
TGCACCAAATCATTTCGTCTCATGTGTCAATAAGAAAGCCTATTGTCAAC
ACTGTTGGCCCAGTACTTTGGTTTACAAAGAAGAATGCAACCAATGCACT
TACACTTTGAAAGACGAATGCCAAACAACACACGCTATAGTTGCTCCACC
TCGACGGGAAGGCGATAAAGAAATCATCTGTCCGGATATATGTGTTAAAA
AAGGACCAAAATTCGACGGGAATATCGCGAATCCGAATTACAAAGGACAT
TACGTGGCTTGTTGGAAAGGCATGACTGTGGGATGTATCGATTGTCCTGG
TGATCTCCTGTTCAATGAGAAAGAACAAGCTTGTTTGTATGACGGCAAAT
TTATGACTGAACCGATGAAGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020355XLOC_020355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034964-exon-sc0001236-1491911889:68495..68596TCONS_00034964-exon-sc0001236-1491911889:68495..68596Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1510915933:68495..68596TCONS_00034964-exon-sc0001236-1510915933:68495..68596Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1575043694:68495..68596TCONS_00034964-exon-sc0001236-1575043694:68495..68596Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1491911889:69022..69078TCONS_00034964-exon-sc0001236-1491911889:69022..69078Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1510915933:69022..69078TCONS_00034964-exon-sc0001236-1510915933:69022..69078Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1575043694:69022..69078TCONS_00034964-exon-sc0001236-1575043694:69022..69078Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1491911889:69773..69937TCONS_00034964-exon-sc0001236-1491911889:69773..69937Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1510915933:69773..69937TCONS_00034964-exon-sc0001236-1510915933:69773..69937Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1575043694:69773..69937TCONS_00034964-exon-sc0001236-1575043694:69773..69937Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1491911889:70763..71211TCONS_00034964-exon-sc0001236-1491911889:70763..71211Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1510915933:70763..71211TCONS_00034964-exon-sc0001236-1510915933:70763..71211Clytia hemisphaericaexon
TCONS_00034964-exon-sc0001236-1575043694:70763..71211TCONS_00034964-exon-sc0001236-1575043694:70763..71211Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034964-proteinTCONS_00034964-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001236supercontigsc0001236:68495..71211 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314519	0.184023	0.142446	0.0696805	0.254488	0.134066	0.323491	0.227136	0.318047	0.131317	0	0.167574	0.251012	0.564803	0.250032	0.574977	658.222	470.019	0.133736	0.489809	0.60819	0.355984	0.288497	0.196714	0.135074	0.964403	4.48519	0.368209	3.49092	2.48968
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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