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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034963 ID=TCONS_00034963|Name=TCONS_00034963|organism=Clytia hemisphaerica|type=transcript|length=936bp
cagagAAAATAACTAACCAACAAATATGAAGTTGACATTAGCAGCACTTT
CACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAGTTAATGGTTCC
AGAATAGATAGATGCGGTGGTTTATGTAAAAACAATGGCAGATGTGTATA
CAGTCATTACAGTCGAAAAcatttctgcaaatgtacaagaGACTTCTTCG
GAAAGTTTTGTCAAACAAGAAGGAACAGATGTCGACCAGGGATCTGTAAG
AATGGTGGGTATTGTGTTTGTAGAAAGAATGTCATTTCATGTCGATGCAG
AGCAGGATTCACTGGTAAAAATTGTGAAAAACAATTAGAAGCCACTTGTA
TTCTGACTCAATCGAGTACCGTCTCTGGCACAATCAATATCAAACAGTTT
CGAAATGGTGTTCGAATCACTGGCCAAGTCAAAGGTATTCCTGCTGGTAA
ACATGGTTTCCATGTCCACCAGTACGGTGATTTATCCAATGGTTGCGCAA
GCTTTGGTGGTCATTTTAACCCCTTTGGATTAACACACGGAGCACCAACC
GACCAAATCAGACATGTTGGAGACTTGGGAAACATCGTTGCAAACTCCAA
TGATATCTCAAATATCAATATCTTTGATCGCCAAGTGTCGTTGGTTGGGA
AATTTAATGTCTTTGGGCGTGGTCTTGTCATCCATGCTGGCGTTGATGAT
TTAGGGCGTGGTGGTGATGCTGGTAGCTTGGCAACTGGAAATGCTGGCTC
AAGATTGGCTTGCTGTATCATCGTACACAAAGCTTAAGGTGTGTACGAGA
CAAACATAATCCCATTGTTTCGCTTATATCTTTGAAAATTGTatagtttt
tcatattttttagatttttacgtgtgcatcaaaatatttttatgtttaaa
ttgtttattttgaaaatacatattttcaaGAATTCG Run BLAST on NCBI transcript from alignment at sc0001236:54732..60678+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034963 ID=TCONS_00034963|Name=TCONS_00034963|organism=Clytia hemisphaerica|type=transcript|length=5947bp|location=Sequence derived from alignment at sc0001236:54732..60678+ (Clytia hemisphaerica)
cagagAAAATAACTAACCAACAAATATGAAGTTGACATTAGCAGCACTTT
CACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAGTTAATGGTAAG
TGGAGTGACCTGGTAAACAGGAGCTGCGGCTtcactttgaaagtgatagt
GCCATGATATACTGAcgaaggaggcgccaccatggttggcgccgacgggt
gaaaagttttgaattttagccCTTCTAGCTCGCCTAAAACAGGgttgttt
taacgttattaaacaatatttgaaaaatgtggtcgactgccccccccccc
ggggccgcggcggattttttttccgtcaacgaacgaagacctacgctagc
ggacgaatacctttaaaactttaatgtgcggttttccagcggccgaagac
ctacgctaacggccgaagacctacaaatttaatgtgcgatcagttttcag
cggccgaagacctacacaaacggccgaagacctgcaaAACTTAGAAATTT
GAGAATCTAAATCTGAGCCAGCGGACGAATACCTTTCTTTGCCGCATGAA
AGTTTTTCGCACCAAACTGCCGTTCAAGCAATAAATGTTTAACATTTCGA
GAAATAAATTATTTTCGTGATAAGTCACATGAAAACATAATGGTACTCTT
GTAAACATGGAGAAGGATTTGATTGCTgatatttttgaggaaatcGAATC
AAAGTACGAAATTGTTACATTTTCTtgtgatgaaaatcatgaaacTGATA
TTGAGATAAAATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGTTTTATAGATGCTACCACGACACAAGGTACGAAAAGAC
AAGAGATGTCAAGTCAATATTGGAGAAGAAACCAACCAAAAGATTCAGGA
ATACTTTTTGTCGCTTTCAGATGTCGGTTAAGATACTTAAAAGTGATTCT
AATGATCAACCAACTCCATTTAGATGTACCATAGATATAGAGCATAAACA
CAATCACCCCGTGAATTCTCTTCATGCTTTAAGCTTTAAATTGATTTCAG
AGGAAacgcaaaattatatcaaaaagCTATTTAAATCTGGTATATGACTC
AATCACAAGCATATGCTGAGTTTCTAGGTGAATTTCGTAGGAAATGTGCT
ACCGAGTACCATTATGTTTTCATGTGACTTATCACGAAAAGAATCTATTT
cacgaaatattaaaaatttattgCTTGAATGGCAGTTTGGTGCGAAAAAC
TTTCATGCGGCAAAGAAAGGTATTCGTCCGCTGGCTCAGATTTAGATTCT
CAAATTTCTAAGTTttgcaggtcttcggccgtttgtgtaggtcttcggcc
gctgaaaACTGATCGCAAATTAAAtttgtaggtcttcggccgttagcgta
ggtcttcggccgctggaaaACCACGcattaaagttttaaaggtattcggt
cgctagcgtaggtcttcgttcgttgacggaaaaaaaatccgCGGCGCCGC
GGCACTTATCacgaaaagaatttatttctcgaaatattaaaaatttattg
CTTGAACGGCAGTTTGGTGCGAAAAACTTTCATGCGGCAAAGAAAGGTAT
TCGTCCGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGGAAAACCGCAcattaaagttttaaaggtattcgg
ccgctagcgtaggtcttcgttcgttgacggaaaaaaaatccgCCGCGGCG
CCTGGCGAAAGTATCAAGAGTTTTTAGGTAAAGAGTATATCCGAAACAGA
TAGCTGAACCCTTTATAGAGATTCTTTCTGAAAAGGTGACTCTTAGAGAG
AAAGCTTTCGTCGGATTTCTAAGAATTATCTTTCTTGGCTTTTCCagttt
tatgatttcaaactttttttatagtGTTATCATTGTTTGACTggattaga
atatttttcaaccgtTTGCTGTTTTCGTAACCTTTTATAAAGACTCGATA
AAGGCTGGAAAACCAATTTTAAAACATGCAAACACCCAACCCATATTTTC
TTGCCTAAGTACTTCGGGTACTACTACCCGACAACTTTGAGTGTTCCCTG
TTTATTCAGAATGCACAACGCCAAATATCACCGCCCATAACATCTATGCT
GCCCATCGAAAATTAttgataaacgtcgaaaaattgtgttccaaaaataa
aaccttttccGCAAAAACTGAGAGAATTTCATtcggtaaaaaattataca
tatCTAATACCAAACTTAAACctttaacttttatttactCAAAAAGGTTC
CAGAATAGATAGATGCGGTGGTTTATGTAAAAACAATGGCAGATGTGTAT
ACAGTCATTACAGTCGAAAAcatttctgcaaatgtacaagaGACTTCTTC
GGAAAGTTTTGTCAAACAAGAAGGAACAGATGTCGACCAGGGATCTGTAA
GAATGGTGGGTATTGTGTTTGTAGAAAGAATGTCATTTCATGTCGATGCA
GAGCAGGATTCACTGGTAAAAATTGTGGTAAGTTGGACGAATCACTCCAG
TCATAAGAGTTTAAGATGTCCCTTTACTTAAAACTTCTGGTCTCGTTAGA
AATAAGATGTTGTGgcgaaaaagtaaaaacattcCAATAacctcgtaccc
agagccacttgcaccacATTTTGATTTTACCGATGGACATGATACAACCT
TTCAAAAGGGCTACCTGAATCATTGAAAGTGAACTTAGGGACTAGGTTCC
AGTTTGAAAGCATTCATTTGACAAGGAAATACACTTTTCTGTTTCCACTA
CTTGCAGTTCGAATGCTTTCCTATTTCAGAAAAACAATTAGAAGCCACTT
GTATTCTGACTCAATCGAGTACCGTCTCTGGCACAATCAATATCAAACAG
TTTCGAAATGGTGTTCGAATCACTGGCCAAGTCAAAGGTATTCCTGCTGG
TAAACATGGTTTCCATGTCCACCAGTACGGTGATTTATCCAATGGTTGCG
CAAGCTTTGGTGGTCATTTTAACCCCTTTGGATTAACACACGGTAAGTGT
AAGCTTATCATAagacatccccttctcacagacccacttggaACTCTTTC
CACTgaaaaaattgtctaaaatattgtccccggtgggaaagtatcctcca
atttttgtccctattgataataatcaaataaacctcactgcaaaatatta
ttatatatttcTCTTCCCACTGAAATTTCTGACTTGAGAACAAAAGAATC
TAAATTCCCAGCCATAAGAAATATGGGAATACctatccccatcgagtttc
agtccgttaattGTTTCCCCACTGGCTGTagaaatcctaccgggtctgtg
agaaggggtgttcaTATATTACCtagtctgaattgcagaccATATAGTAT
GTGAACAGAACTAGGTAGGCTGCAGGCTTTGGTTTGTCTAGATCCCGACT
GACTAACTAGTCTGAATCGAAGACCTCTACAAAACGAATACCAAGAGGTA
TGGATCTGTTGGTGGAGCCAGCAGCCTACAAAGTATCTAAATAGAACTAT
GAAGGCCTTTGTTTGTCTCGGTCCTGACTGGCTGACGGTGGATGAATGTG
ACTTATTTTCCGCCTTTGATTCTGCGGGTCGAACGGGATAATTCGAAATA
CTTCCTCTGTTTTCAGAAGCGTAGATGAAAAACTTGCAACTAAGCCTAGT
ATTGAATGATTTGCACACGTGACCTAATTCACACCAAAAAAACATATTGT
TGATTCCAGTATTAAAAAGGGGTTAAGATTTCAtttctatttcaaaataa
atatgtttttacaattttttataaaCTCAACGATTATCTTCCTGGAGTGA
CAAACATACTAAACTGTGCACGGTTAAACATAGACGCTTATTTAAAAAGA
CACACAGGGTAGTATAGGTAGCAAACATTACGTATAGCAAGTTACTTATA
TACATCAAGACTTTCATTTTTGTCATGTAGCCTCTTACGAAGATTGTGAA
GCATAACTAGCCTTGCTCCTTAGCATTAATACTAGCAGGTTGATATATCT
GTATTTTTCTGCGACTGAGACGGTTAGCTTGtgatttgactagatcctga
ttgactgaggacgacggtaaatcaatACTTGTACCGTTCTCGGTTTTGTG
GTTCAAAATTGCAAGTTTTTCCAAAACGCTTAAGTCACTCCACTATCCTC
AAAAGTATAAATATACAAACTTGCTATTGGATTACTACTGTTAGCCAAAA
CTATTCGTCGGTGCCTTACGAACTAAACCATAGTGAAGGGGTTACGTGTC
CAGGCTAGTGAGTTATTGTCACTACACAAGCAAATCAAACCTACTTCCCT
TCAAGGACCGTCCGAAGGCTACCATTTAGACATGTAAGCCTTCCAaaaat
tgttcatttttttcgttAATGCACCCCCACAAGTTTTCATCtgataaaac
aatttttattaGAAGTAGTAATCGACCGCTGTaagcggtttctttcatag
tggctaaatcgttttgccttggctcattactttgtctaccatttactttc
ggttttttaactagattacccaggtgtttctcttttttttccctgaatgt
cttttattcggaattgaataatcgagatatgaaaaatgactacattgtaa
tctgttttcaatgaataatctaaaatgtactggagatgacatgtaggcgt
taataatgtgcggtCGTTTCAGCGTGGTtaagatccacactgtgacctga
GAAGCCTGTGTTTCACACCTGTGTTGTTTTTTAGCATACTTTTTACCGGG
GAAATCCTAAATTGAAGTTCAATTTAAAACATTACATATCCCACTGGGTC
TTTCGAGCTGgcaacaatagaatttctatcccctttGAAAAAGATTTGTT
CTCCCACATCTGGGAAGATATCATCGttgctgtgagacaggggtgtataa
tttTGTTCCAAGAGTGTGGTTAGATGAAACAGGAACAATGTGGTTAGAAG
AAATCGCGCAAGTCTTGTGGTACAAGGTTAACCAGTTGCTATTCCATTGT
GAGcgatcatcatcatcatccttcgatctAGGTCCGAGAGTGAGATCTAG
GTCCGAGTGACCGATGGTTGATTCTTATTTTCATTAACTTCAATTTATAG
GAGCACCAACCGACCAAATCAGACATGTTGGAGACTTGGGAAACATCGTT
GCAAACTCCAATGATATCTCAAATATCAATATCTTTGATCGCCAAGTGTC
GTTGGTTGGGAAATTTAATGTCTTTGGGCGTGGTCTTGTCATCCATGCTG
GCGTTGATGATTTAGGGCGTGGTGGTGATGCTGGTAGCTTGGCAACTGGA
AATGCTGGCTCAAGATTGGCTTGCTGTATCATCGTACACAAAGCTTAAGG
TGTGTACGAGACAAACATAATCCCATTGTTTCGCTTATATCTTTGAAAAT
TGTatagtttttcatattttttagatttttacgtgtgcatcaaaatattt
ttatgtttaaattgtttattttgaaaatacatattttcaaGAATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034963-exon-sc0001236-1491911889:54732..54826 | TCONS_00034963-exon-sc0001236-1491911889:54732..54826 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1510915933:54732..54826 | TCONS_00034963-exon-sc0001236-1510915933:54732..54826 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1575043694:54732..54826 | TCONS_00034963-exon-sc0001236-1575043694:54732..54826 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1491911889:57428..57658 | TCONS_00034963-exon-sc0001236-1491911889:57428..57658 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1510915933:57428..57658 | TCONS_00034963-exon-sc0001236-1510915933:57428..57658 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1575043694:57428..57658 | TCONS_00034963-exon-sc0001236-1575043694:57428..57658 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1491911889:57961..58173 | TCONS_00034963-exon-sc0001236-1491911889:57961..58173 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1510915933:57961..58173 | TCONS_00034963-exon-sc0001236-1510915933:57961..58173 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1575043694:57961..58173 | TCONS_00034963-exon-sc0001236-1575043694:57961..58173 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1491911889:60282..60678 | TCONS_00034963-exon-sc0001236-1491911889:60282..60678 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1510915933:60282..60678 | TCONS_00034963-exon-sc0001236-1510915933:60282..60678 | Clytia hemisphaerica | exon |
| TCONS_00034963-exon-sc0001236-1575043694:60282..60678 | TCONS_00034963-exon-sc0001236-1575043694:60282..60678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001236 | supercontig | sc0001236:54732..60678 + |
Blast
BLAST of TCONS_00034963 vs. Swiss-Prot (Human)
Match: SODC (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 1.163e-35 Identity = 70/147 (47.62%), Postives = 96/147 (65.31%), Query Frame = 2
Query: 338 EATCILTQSSTVSGTINIKQFRNG--VRITGQVKGIPAGKHGFHVHQYGDLSNGCASFGGHFNPFGLTHGAPTDQIRHVGDLGXXXXXXXXXXXXXXFDRQVSLVGKFNVFGRGLVIHAGVDDLGRGGDAGSLATGNAGSRLACCII 772
+A C+L V G IN +Q + V++ G +KG+ G HGFHVH++GD + GC S G HFNP HG P D+ RHVGDLGN+ A+ + +++++I D +SL G + GR LV+H DDLG+GG+ S TGNAGSRLAC +I
Sbjct: 4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVI 150
The following BLAST results are available for this feature:
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