TCONS_00034962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034962
Unique NameTCONS_00034962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034962 ID=TCONS_00034962|Name=TCONS_00034962|organism=Clytia hemisphaerica|type=transcript|length=2036bp
tttttttctgcttttttacTTTTACCAAAGCTGAAATAAATcgattttaa
taatttttgtcaattttcacaGTATCTTATTCAGTCAGCAGACGAAGGAA
GTCTAAAGAATAAAGTTCGATGATATTGCTTAGGAAAGGGAAGATGGATT
TAATCAGGAAACATAACACATATTTCAGGGgagttaaaaatctaaaaatg
attactaaattatttttggttgTCTGCGTCGTTTAGTCATacacccttgt
gtcacagaTCCGATGAGACCCCAACCCCACTATACCTGAGAATTTcggcc
ccactgggaaattgactttgatttcacctcattcgaaattcaatgtttaa
aagttgaactccaaaaccatccccattggattctttaatcttagaacaat
agaatttttatctccattgagatttcaatagaaatttttgtcccTGCTGT
GGGGAAAAGTTTCACCGGCGCTGCGAGTTAGGGGTGTAATCATGTATACA
ATGGAAACCCAGCTAGAAACAACTGTATCTCATCATTTGAATATCTAAAT
TTGAGGcccccagtggtttgcgtgatggGGCGTGATTGGGCccttttttg
gcgtgatggcgtgatgtaTGATTTAAAACAAATGCGATACATGATTGGAA
AGGGAATTTTTTAGTGTGATGGCGTGATGAGAATTTTATTTTGGCGTGTT
GGTGTGATCAAGGACTCTTATCTGTGCTGAAATGCCTTCAAATACGGGGC
TACCAAAAACGACGGTCGTAAACTACAGTATAGgatcttttttttaatct
taaaaCTTTTATAACATCAAAAGGATGACTTCATTGGCAATTTCTAATGT
CAATATTATAATTTGCGTTGATTAGACATAAGTATGTATTAcaaaaaaaa
gtgcaaaaaattcTCTATCGGAAATCGTTATAAGTGATCTAGCTTTTGCT
AATTATTGCGGTCGCCATTAATATTATATCTCAACCGGCTAATTGAGTAT
ATCAGGGTATAAAAGGAATGTAAATTAGCTAGTCAAGTGTAGTGAAAGCA
GCAAGGGCATGGCATGGTGTACTATATGAAGAATAATTGGAAGAATTTAA
TAGaGAAAATAACTAACCAACAAATATGAAGTTGACATTAGCAGCACTTT
CACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAGTTAATGGTTCC
AGAATAGATAGATGCGGTGGTTTATGTAAAAACAATGGCAGATGTGTATA
CAGTCATTACAGTCGAAAAcatttctgcaaatgtacaagaGACTTCTTCG
GAAAGTTTTGTCAAACAAGAAGGAACAGATGTCGACCAGGGATCTGTAAG
AATGGTGGGTATTGTGTTTGTAGAAAGAATGTCATTTCATGTCGATGCAG
AGCAGGATTCACTGGTAAAAATTGTGAAAAACAATTAGAAGCCACTTGTA
TTCTGACTCAATCGAGTACCGTCTCTGGCACAATCAATATCAAACAGTTT
CGAAATGGTGTTCGAATCACTGGCCAAGTCAAAGGTATTCCTGCTGGTAA
ACATGGTTTCCATGTCCACCAGTACGGTGATTTATCCAATGGTTGCGCAA
GCTTTGGTGGTCATTTTAACCCCTTTGGATTAACACACGGAGCACCAACC
GACCAAATCAGACATGTTGGAGACTTGGGAAACATCGTTGCAAACTCCAA
TGATATCTCAAATATCAATATCTTTGATCGCCAAGTGTCGTTGGTTGGGA
AATTTAATGTCTTTGGGCGTGGTCTTGTCATCCATGCTGGCGTTGATGAT
TTAGGGCGTGGTGGTGATGCTGGTAGCTTGGCAACTGGAAATGCTGGCTC
AAGATTGGCTTGCTGTATCATCGTACACAAAGCTTAAGGTGTGTACGAGA
CAAACATAATCCCATTGTTTCGCTTATATCTTTGAAAATTGTatagtttt
tcatattttttagatttttacgtgtgcatcaaaatatttttatgtttaaa
ttgtttattttgaaaatacatattttcaaGAATTCG
Run BLAST on NCBI

protein sequence of TCONS_00034962-protein

>TCONS_00034962-protein ID=TCONS_00034962-protein|Name=TCONS_00034962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MKLTLAALSLLAIIALTQFEEVNGSRIDRCGGLCKNNGRCVYSHYSRKHF
CKCTRDFFGKFCQTRRNRCRPGICKNGGYCVCRKNVISCRCRAGFTGKNC
EKQLEATCILTQSSTVSGTINIKQFRNGVRITGQVKGIPAGKHGFHVHQY
GDLSNGCASFGGHFNPFGLTHGAPTDQIRHVGDLGNIVANSNDISNINIF
DRQVSLVGKFNVFGRGLVIHAGVDDLGRGGDAGSLATGNAGSRLACCIIV
HKA
Run BLAST on NCBI

transcript from alignment at sc0001236:52583..60678+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034962 ID=TCONS_00034962|Name=TCONS_00034962|organism=Clytia hemisphaerica|type=transcript|length=8096bp|location=Sequence derived from alignment at sc0001236:52583..60678+ (Clytia hemisphaerica)
tttttttctgcttttttacTTTTACCAAAGCTGAAATAAATcgattttaa
taatttttgtcaattttcacaGTATCTTATTCAGTCAGCAGACGAAGGAA
GTCTAAAGAATAAAGTTCGATGATATTGCTTAGGAAAGGGAAGATGGATT
TAATCAGGAAACATAACACATATTTCAGGGgagttaaaaatctaaaaatg
attactaaattatttttggttgTCTGCGTCGTTTAGTCATacacccttgt
gtcacagaTCCGATGAGACCCCAACCCCACTATACCTGAGAATTTcggcc
ccactgggaaattgactttgatttcacctcattcgaaattcaatgtttaa
aagttgaactccaaaaccatccccattggattctttaatcttagaacaat
agaatttttatctccattgagatttcaatagaaatttttgtcccTGCTGT
GGGGAAAAGTTTCACCGGCGCTGCGAGTTAGGGGTGTAATCATGTATACA
ATGGAAACCCAGCTAGAAACAACTGTATCTCATCATTTGAATATCTAAAT
TTGAGGcccccagtggtttgcgtgatggGGCGTGATTGGGCccttttttg
gcgtgatggcgtgatgtaTGATTTAAAACAAATGCGATACATGATTGGAA
AGGGAATTTTTTAGTGTGATGGCGTGATGAGAATTTTATTTTGGCGTGTT
GGTGTGATCAAGGACTCTTATCTGTGCTGAAATGCCTTCAAATACGGGGC
TACCAAAAACGACGGTCGTAAACTACAGTATAGgatcttttttttaatct
taaaaCTTTTATAACATCAAAAGGATGACTTCATTGGCAATTTCTAATGT
CAATATTATAATTTGCGTTGATTAGACATAAGTATGTATTAcaaaaaaaa
gtgcaaaaaattcTCTATCGGAAATCGTTATAAGTGATCTAGCTTTTGCT
AATTATTGCGGTCGCCATTAATATTATATCTCAACCGGCTAATTGAGTAT
ATCAGGGTATAAAAGGAATGTAAATTAGCTAGTCAAGTGTAGTGAAAGCA
GCAAGGGCATGGCATGGTGTACTATATGAAGAATAATTGGAAGAATTTAA
TAGGTACAAAGGAGTTAGCGTCGAAGGGGCTAGAGAGGATTCTTTAgcct
ttctcaagcaaaaaaaagtgaggCCTTACGAATTGCGCCATATTTAGAAC
GACGGATTTAAGGACGTATTCtagtcttttctttgtttttgtgcaacata
ttttccaaaatcgagCGATAGATTATACTTTCAATCTAGCTTGACCACAC
AGGACACGCGTTTTGGATGCGAAATAAGTGGcatcatttcccatccaaga
acTTCATATCTAGTCCCTttggggctttgaaatcaatggcaGAAAGTCAt
atcatagtccgtataaaaattctattgttataactttttgttaacAATCA
ATTTGCTCAATTTTTGATCATGTTATCAAATACTACAAAATTTAATCACG
TGATCAAAATAAACTAATTTCGTATTAACGCAAGTCAGAAACGATAGAAA
TGCATAGAAGACCGGTGTTTTTTGTACGGACGAGAGTTGTTACTATAATT
CGAATTCAATTAAGCTCTTTGTAGGTTATCGGGGGGACGTTATCGAGTTA
TAGAAGCTCCACTgaatataaaaaattaacacgttcgatttttattttct
tcagaGAAAATAACTAACCAACAAATATGAAGTTGACATTAGCAGCACTT
TCACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAGTTAATGGTAA
GTGGAGTGACCTGGTAAACAGGAGCTGCGGCTTCACTTTGAANTTCCAAT
ACCGATTTTTTCGGGTATTTtccctcgttttgactaatttgatttttcat
gtatgaattccaaaaaagggggataaaaacttaataataccgaaattccg
aagcaaaaattcatggatttccgatacctaAACAATTTCAACATTCCGAA
ATACCaaaggaattttgcccgatttccgaatttccgaagaaaaaagggtc
gatttccgcaattccgaaataccgtacgcccctcACGTTATCGAGTTATA
GAGGCTCCACTGAATATCAAAAATTAACACGttcgatttttcttttcttc
agagAAAATAACTAACCAACAAATATGAAGTTGACATTAGCAGCACTTTC
ACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAGTTAATGGTAAGT
GGAGTGACCTGGTAAACAGGAGCTGCGGCTtcactttgaaagtgatagtG
CCATGATATACTGAcgaaggaggcgccaccatggttggcgccgacgggtg
aaaagttttgaattttagccCTTCTAGCTCGCCTAAAACAGGgttgtttt
aacgttattaaacaatatttgaaaaatgtggtcgactgcccccccccccg
gggccgcggcggattttttttccgtcaacgaacgaagacctacgctagcg
gacgaatacctttaaaactttaatgtgcggttttccagcggccgaagacc
tacgctaacggccgaagacctacaaatttaatgtgcgatcagttttcagc
ggccgaagacctacacaaacggccgaagacctgcaaAACTTAGAAATTTG
AGAATCTAAATCTGAGCCAGCGGACGAATACCTTTCTTTGCCGCATGAAA
GTTTTTCGCACCAAACTGCCGTTCAAGCAATAAATGTTTAACATTTCGAG
AAATAAATTATTTTCGTGATAAGTCACATGAAAACATAATGGTACTCTTG
TAAACATGGAGAAGGATTTGATTGCTgatatttttgaggaaatcGAATCA
AAGTACGAAATTGTTACATTTTCTtgtgatgaaaatcatgaaacTGATAT
TGAGATAAAATGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTGTTTTATAGATGCTACCACGACACAAGGTACGAAAAGACA
AGAGATGTCAAGTCAATATTGGAGAAGAAACCAACCAAAAGATTCAGGAA
TACTTTTTGTCGCTTTCAGATGTCGGTTAAGATACTTAAAAGTGATTCTA
ATGATCAACCAACTCCATTTAGATGTACCATAGATATAGAGCATAAACAC
AATCACCCCGTGAATTCTCTTCATGCTTTAAGCTTTAAATTGATTTCAGA
GGAAacgcaaaattatatcaaaaagCTATTTAAATCTGGTATATGACTCA
ATCACAAGCATATGCTGAGTTTCTAGGTGAATTTCGTAGGAAATGTGCTA
CCGAGTACCATTATGTTTTCATGTGACTTATCACGAAAAGAATCTATTTc
acgaaatattaaaaatttattgCTTGAATGGCAGTTTGGTGCGAAAAACT
TTCATGCGGCAAAGAAAGGTATTCGTCCGCTGGCTCAGATTTAGATTCTC
AAATTTCTAAGTTttgcaggtcttcggccgtttgtgtaggtcttcggccg
ctgaaaACTGATCGCAAATTAAAtttgtaggtcttcggccgttagcgtag
gtcttcggccgctggaaaACCACGcattaaagttttaaaggtattcggtc
gctagcgtaggtcttcgttcgttgacggaaaaaaaatccgCGGCGCCGCG
GCACTTATCacgaaaagaatttatttctcgaaatattaaaaatttattgC
TTGAACGGCAGTTTGGTGCGAAAAACTTTCATGCGGCAAAGAAAGGTATT
CGTCCGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTGGAAAACCGCAcattaaagttttaaaggtattcggc
cgctagcgtaggtcttcgttcgttgacggaaaaaaaatccgCCGCGGCGC
CTGGCGAAAGTATCAAGAGTTTTTAGGTAAAGAGTATATCCGAAACAGAT
AGCTGAACCCTTTATAGAGATTCTTTCTGAAAAGGTGACTCTTAGAGAGA
AAGCTTTCGTCGGATTTCTAAGAATTATCTTTCTTGGCTTTTCCagtttt
atgatttcaaactttttttatagtGTTATCATTGTTTGACTggattagaa
tatttttcaaccgtTTGCTGTTTTCGTAACCTTTTATAAAGACTCGATAA
AGGCTGGAAAACCAATTTTAAAACATGCAAACACCCAACCCATATTTTCT
TGCCTAAGTACTTCGGGTACTACTACCCGACAACTTTGAGTGTTCCCTGT
TTATTCAGAATGCACAACGCCAAATATCACCGCCCATAACATCTATGCTG
CCCATCGAAAATTAttgataaacgtcgaaaaattgtgttccaaaaataaa
accttttccGCAAAAACTGAGAGAATTTCATtcggtaaaaaattatacat
atCTAATACCAAACTTAAACctttaacttttatttactCAAAAAGGTTCC
AGAATAGATAGATGCGGTGGTTTATGTAAAAACAATGGCAGATGTGTATA
CAGTCATTACAGTCGAAAAcatttctgcaaatgtacaagaGACTTCTTCG
GAAAGTTTTGTCAAACAAGAAGGAACAGATGTCGACCAGGGATCTGTAAG
AATGGTGGGTATTGTGTTTGTAGAAAGAATGTCATTTCATGTCGATGCAG
AGCAGGATTCACTGGTAAAAATTGTGGTAAGTTGGACGAATCACTCCAGT
CATAAGAGTTTAAGATGTCCCTTTACTTAAAACTTCTGGTCTCGTTAGAA
ATAAGATGTTGTGgcgaaaaagtaaaaacattcCAATAacctcgtaccca
gagccacttgcaccacATTTTGATTTTACCGATGGACATGATACAACCTT
TCAAAAGGGCTACCTGAATCATTGAAAGTGAACTTAGGGACTAGGTTCCA
GTTTGAAAGCATTCATTTGACAAGGAAATACACTTTTCTGTTTCCACTAC
TTGCAGTTCGAATGCTTTCCTATTTCAGAAAAACAATTAGAAGCCACTTG
TATTCTGACTCAATCGAGTACCGTCTCTGGCACAATCAATATCAAACAGT
TTCGAAATGGTGTTCGAATCACTGGCCAAGTCAAAGGTATTCCTGCTGGT
AAACATGGTTTCCATGTCCACCAGTACGGTGATTTATCCAATGGTTGCGC
AAGCTTTGGTGGTCATTTTAACCCCTTTGGATTAACACACGGTAAGTGTA
AGCTTATCATAagacatccccttctcacagacccacttggaACTCTTTCC
ACTgaaaaaattgtctaaaatattgtccccggtgggaaagtatcctccaa
tttttgtccctattgataataatcaaataaacctcactgcaaaatattat
tatatatttcTCTTCCCACTGAAATTTCTGACTTGAGAACAAAAGAATCT
AAATTCCCAGCCATAAGAAATATGGGAATACctatccccatcgagtttca
gtccgttaattGTTTCCCCACTGGCTGTagaaatcctaccgggtctgtga
gaaggggtgttcaTATATTACCtagtctgaattgcagaccATATAGTATG
TGAACAGAACTAGGTAGGCTGCAGGCTTTGGTTTGTCTAGATCCCGACTG
ACTAACTAGTCTGAATCGAAGACCTCTACAAAACGAATACCAAGAGGTAT
GGATCTGTTGGTGGAGCCAGCAGCCTACAAAGTATCTAAATAGAACTATG
AAGGCCTTTGTTTGTCTCGGTCCTGACTGGCTGACGGTGGATGAATGTGA
CTTATTTTCCGCCTTTGATTCTGCGGGTCGAACGGGATAATTCGAAATAC
TTCCTCTGTTTTCAGAAGCGTAGATGAAAAACTTGCAACTAAGCCTAGTA
TTGAATGATTTGCACACGTGACCTAATTCACACCAAAAAAACATATTGTT
GATTCCAGTATTAAAAAGGGGTTAAGATTTCAtttctatttcaaaataaa
tatgtttttacaattttttataaaCTCAACGATTATCTTCCTGGAGTGAC
AAACATACTAAACTGTGCACGGTTAAACATAGACGCTTATTTAAAAAGAC
ACACAGGGTAGTATAGGTAGCAAACATTACGTATAGCAAGTTACTTATAT
ACATCAAGACTTTCATTTTTGTCATGTAGCCTCTTACGAAGATTGTGAAG
CATAACTAGCCTTGCTCCTTAGCATTAATACTAGCAGGTTGATATATCTG
TATTTTTCTGCGACTGAGACGGTTAGCTTGtgatttgactagatcctgat
tgactgaggacgacggtaaatcaatACTTGTACCGTTCTCGGTTTTGTGG
TTCAAAATTGCAAGTTTTTCCAAAACGCTTAAGTCACTCCACTATCCTCA
AAAGTATAAATATACAAACTTGCTATTGGATTACTACTGTTAGCCAAAAC
TATTCGTCGGTGCCTTACGAACTAAACCATAGTGAAGGGGTTACGTGTCC
AGGCTAGTGAGTTATTGTCACTACACAAGCAAATCAAACCTACTTCCCTT
CAAGGACCGTCCGAAGGCTACCATTTAGACATGTAAGCCTTCCAaaaatt
gttcatttttttcgttAATGCACCCCCACAAGTTTTCATCtgataaaaca
atttttattaGAAGTAGTAATCGACCGCTGTaagcggtttctttcatagt
ggctaaatcgttttgccttggctcattactttgtctaccatttactttcg
gttttttaactagattacccaggtgtttctcttttttttccctgaatgtc
ttttattcggaattgaataatcgagatatgaaaaatgactacattgtaat
ctgttttcaatgaataatctaaaatgtactggagatgacatgtaggcgtt
aataatgtgcggtCGTTTCAGCGTGGTtaagatccacactgtgacctgaG
AAGCCTGTGTTTCACACCTGTGTTGTTTTTTAGCATACTTTTTACCGGGG
AAATCCTAAATTGAAGTTCAATTTAAAACATTACATATCCCACTGGGTCT
TTCGAGCTGgcaacaatagaatttctatcccctttGAAAAAGATTTGTTC
TCCCACATCTGGGAAGATATCATCGttgctgtgagacaggggtgtataat
ttTGTTCCAAGAGTGTGGTTAGATGAAACAGGAACAATGTGGTTAGAAGA
AATCGCGCAAGTCTTGTGGTACAAGGTTAACCAGTTGCTATTCCATTGTG
AGcgatcatcatcatcatccttcgatctAGGTCCGAGAGTGAGATCTAGG
TCCGAGTGACCGATGGTTGATTCTTATTTTCATTAACTTCAATTTATAGG
AGCACCAACCGACCAAATCAGACATGTTGGAGACTTGGGAAACATCGTTG
CAAACTCCAATGATATCTCAAATATCAATATCTTTGATCGCCAAGTGTCG
TTGGTTGGGAAATTTAATGTCTTTGGGCGTGGTCTTGTCATCCATGCTGG
CGTTGATGATTTAGGGCGTGGTGGTGATGCTGGTAGCTTGGCAACTGGAA
ATGCTGGCTCAAGATTGGCTTGCTGTATCATCGTACACAAAGCTTAAGGT
GTGTACGAGACAAACATAATCCCATTGTTTCGCTTATATCTTTGAAAATT
GTatagtttttcatattttttagatttttacgtgtgcatcaaaatatttt
tatgtttaaattgtttattttgaaaatacatattttcaaGAATTCG

Coding sequence (CDS) from alignment at sc0001236:52583..60678+

>TCONS_00034962 ID=TCONS_00034962|Name=TCONS_00034962|organism=Clytia hemisphaerica|type=CDS|length=3048bp|location=Sequence derived from alignment at sc0001236:52583..60678+ (Clytia hemisphaerica)
ATGAAGTTGACATTAGCAGCACTTTCACTTTTGGCCATCATAGCGCTTAC
ACAATTTGAGGAAGTTAATGGTTCCAGAATAGATAGATGCGGTGGTTTAT
GTAAAAACAATGGCAGATGTGTATACAGTCATTACAGTCGAAAAcatttc
tgcaaatgtacaagaGACTTCTTCGGAAAGTTTTGTCAAACAAGAAGGAA
CAGATGTCGACCAGGGATCTGTAAGAATGGTGGGTATTGTGTTTGTAGAA
AGAATGTCATTTCATGTCGATGCAGAGCAGGATTCACTGGTAAAAATTGT
GAAAAACAATTAGAAGCCACTTGTATTCTGACTCAATCGAGTACCGTCTC
TGGCACAATCAATATCAAACAGTTTCGAAATGGTGTTCGAATCACTGGCC
AAGTCAAAGGTATTCCTGCTGGTAAACATGGTTTCCATGTCCACCAGTAC
GGTGATTTATCCAATGGTTGCGCAAGCTTTGGTGGTCATTTTAACCCCTT
TGGATTAACACACGGAGCACCAACCGACCAAATCAGACATGTTGGAGACT
TGGGAAACATCGTTGCAAACTCCAATGATATCTCAAATATCAATATCTTT
GATCGCCAAGTGTCGTTGGTTGGGAAATTTAATGTCTTTGGGCGTGGTCT
TGTCATCCATGCTGGCGTTGATGATTTAGGGCGTGGTGGTGATGCTGGTA
GCTTGGCAACTGGAAATGCTGGCTCAAGATTGGCTTGCTGTATCATCGTA
CACAAAGCTTAAATGAAGTTGACATTAGCAGCACTTTCACTTTTGGCCAT
CATAGCGCTTACACAATTTGAGGAAGTTAATGGTTCCAGAATAGATAGAT
GCGGTGGTTTATGTAAAAACAATGGCAGATGTGTATACAGTCATTACAGT
CGAAAAcatttctgcaaatgtacaagaGACTTCTTCGGAAAGTTTTGTCA
AACAAGAAGGAACAGATGTCGACCAGGGATCTGTAAGAATGGTGGGTATT
GTGTTTGTAGAAAGAATGTCATTTCATGTCGATGCAGAGCAGGATTCACT
GGTAAAAATTGTGAAAAACAATTAGAAGCCACTTGTATTCTGACTCAATC
GAGTACCGTCTCTGGCACAATCAATATCAAACAGTTTCGAAATGGTGTTC
GAATCACTGGCCAAGTCAAAGGTATTCCTGCTGGTAAACATGGTTTCCAT
GTCCACCAGTACGGTGATTTATCCAATGGTTGCGCAAGCTTTGGTGGTCA
TTTTAACCCCTTTGGATTAACACACGGAGCACCAACCGACCAAATCAGAC
ATGTTGGAGACTTGGGAAACATCGTTGCAAACTCCAATGATATCTCAAAT
ATCAATATCTTTGATCGCCAAGTGTCGTTGGTTGGGAAATTTAATGTCTT
TGGGCGTGGTCTTGTCATCCATGCTGGCGTTGATGATTTAGGGCGTGGTG
GTGATGCTGGTAGCTTGGCAACTGGAAATGCTGGCTCAAGATTGGCTTGC
TGTATCATCGTACACAAAGCTTAAATGAAGTTGACATTAGCAGCACTTTC
ACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAGTTAATGGTTCCA
GAATAGATAGATGCGGTGGTTTATGTAAAAACAATGGCAGATGTGTATAC
AGTCATTACAGTCGAAAAcatttctgcaaatgtacaagaGACTTCTTCGG
AAAGTTTTGTCAAACAAGAAGGAACAGATGTCGACCAGGGATCTGTAAGA
ATGGTGGGTATTGTGTTTGTAGAAAGAATGTCATTTCATGTCGATGCAGA
GCAGGATTCACTGGTAAAAATTGTGAAAAACAATTAGAAGCCACTTGTAT
TCTGACTCAATCGAGTACCGTCTCTGGCACAATCAATATCAAACAGTTTC
GAAATGGTGTTCGAATCACTGGCCAAGTCAAAGGTATTCCTGCTGGTAAA
CATGGTTTCCATGTCCACCAGTACGGTGATTTATCCAATGGTTGCGCAAG
CTTTGGTGGTCATTTTAACCCCTTTGGATTAACACACGGAGCACCAACCG
ACCAAATCAGACATGTTGGAGACTTGGGAAACATCGTTGCAAACTCCAAT
GATATCTCAAATATCAATATCTTTGATCGCCAAGTGTCGTTGGTTGGGAA
ATTTAATGTCTTTGGGCGTGGTCTTGTCATCCATGCTGGCGTTGATGATT
TAGGGCGTGGTGGTGATGCTGGTAGCTTGGCAACTGGAAATGCTGGCTCA
AGATTGGCTTGCTGTATCATCGTACACAAAGCTTAAATGAAGTTGACATT
AGCAGCACTTTCACTTTTGGCCATCATAGCGCTTACACAATTTGAGGAAG
TTAATGGTTCCAGAATAGATAGATGCGGTGGTTTATGTAAAAACAATGGC
AGATGTGTATACAGTCATTACAGTCGAAAAcatttctgcaaatgtacaag
aGACTTCTTCGGAAAGTTTTGTCAAACAAGAAGGAACAGATGTCGACCAG
GGATCTGTAAGAATGGTGGGTATTGTGTTTGTAGAAAGAATGTCATTTCA
TGTCGATGCAGAGCAGGATTCACTGGTAAAAATTGTGAAAAACAATTAGA
AGCCACTTGTATTCTGACTCAATCGAGTACCGTCTCTGGCACAATCAATA
TCAAACAGTTTCGAAATGGTGTTCGAATCACTGGCCAAGTCAAAGGTATT
CCTGCTGGTAAACATGGTTTCCATGTCCACCAGTACGGTGATTTATCCAA
TGGTTGCGCAAGCTTTGGTGGTCATTTTAACCCCTTTGGATTAACACACG
GAGCACCAACCGACCAAATCAGACATGTTGGAGACTTGGGAAACATCGTT
GCAAACTCCAATGATATCTCAAATATCAATATCTTTGATCGCCAAGTGTC
GTTGGTTGGGAAATTTAATGTCTTTGGGCGTGGTCTTGTCATCCATGCTG
GCGTTGATGATTTAGGGCGTGGTGGTGATGCTGGTAGCTTGGCAACTGGA
AATGCTGGCTCAAGATTGGCTTGCTGTATCATCGTACACAAAGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020354XLOC_020354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034962-exon-sc0001236-1491911889:52583..53685TCONS_00034962-exon-sc0001236-1491911889:52583..53685Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1510915933:52583..53685TCONS_00034962-exon-sc0001236-1510915933:52583..53685Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1575043694:52583..53685TCONS_00034962-exon-sc0001236-1575043694:52583..53685Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1491911889:54287..54378TCONS_00034962-exon-sc0001236-1491911889:54287..54378Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1510915933:54287..54378TCONS_00034962-exon-sc0001236-1510915933:54287..54378Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1575043694:54287..54378TCONS_00034962-exon-sc0001236-1575043694:54287..54378Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1491911889:57428..57658TCONS_00034962-exon-sc0001236-1491911889:57428..57658Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1510915933:57428..57658TCONS_00034962-exon-sc0001236-1510915933:57428..57658Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1575043694:57428..57658TCONS_00034962-exon-sc0001236-1575043694:57428..57658Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1491911889:57961..58173TCONS_00034962-exon-sc0001236-1491911889:57961..58173Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1510915933:57961..58173TCONS_00034962-exon-sc0001236-1510915933:57961..58173Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1575043694:57961..58173TCONS_00034962-exon-sc0001236-1575043694:57961..58173Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1491911889:60282..60678TCONS_00034962-exon-sc0001236-1491911889:60282..60678Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1510915933:60282..60678TCONS_00034962-exon-sc0001236-1510915933:60282..60678Clytia hemisphaericaexon
TCONS_00034962-exon-sc0001236-1575043694:60282..60678TCONS_00034962-exon-sc0001236-1575043694:60282..60678Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034962-proteinTCONS_00034962-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001236supercontigsc0001236:52583..60678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0314513	0	0.0430211	0.026187	0	0.165863	0.388197	1.98403	2.01765	0.0980283	1.33014	0.021266	0.133657	6.86776	0.589613	0.0484236	0.074449	0.0342851	0	0.03755	0	0.0739601	0.0336203	0	0	0	0	0.107393	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
IPR000742EGF-like_dom
IPR013032EGF-like_CS
IPR018152SOD_Cu/Zn_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
Blast
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BLAST of TCONS_00034962 vs. Swiss-Prot (Human)
Match: SODC (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 5.584e-34
Identity = 72/147 (48.98%), Postives = 97/147 (65.99%), Query Frame = 1 
Query: 1438 EATCILTQSSTVSGTINIKQFR-NG-VRITGQVKGIPAGKHGFHVHQYGDLSNGCASFGGHFNPFGLTHGAPTDQIRHVGDLGXXXXXXXXXXXXXXFDRQVSLVGKFNVFGRGLVIHAGVDDLGRGGDAGSLATGNAGSRLACCII 1872
            +A C+L     V G IN +Q   NG V++ G +KG+  G HGFHVH++GD + GC S G HFNP    HG P D+ RHVGDLGN+ A+ + +++++I D  +SL G   + GR LV+H   DDLG+GG+  S  TGNAGSRLAC +I
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVI 150
The following BLAST results are available for this feature:
BLAST of TCONS_00034962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODC5.584e-3448.98Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
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