TCONS_00034962-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034962-protein
Unique NameTCONS_00034962-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034962-protein ID=TCONS_00034962-protein|Name=TCONS_00034962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MKLTLAALSLLAIIALTQFEEVNGSRIDRCGGLCKNNGRCVYSHYSRKHF
CKCTRDFFGKFCQTRRNRCRPGICKNGGYCVCRKNVISCRCRAGFTGKNC
EKQLEATCILTQSSTVSGTINIKQFRNGVRITGQVKGIPAGKHGFHVHQY
GDLSNGCASFGGHFNPFGLTHGAPTDQIRHVGDLGNIVANSNDISNINIF
DRQVSLVGKFNVFGRGLVIHAGVDDLGRGGDAGSLATGNAGSRLACCIIV
HKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020354XLOC_020354Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034962TCONS_00034962Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
IPR000742EGF-like_dom
IPR013032EGF-like_CS
IPR018152SOD_Cu/Zn_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0004784superoxide dismutase activity
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004784 superoxide dismutase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 224..250
score: 60.75
coord: 180..189
score: 76.08
coord: 199..221
score: 41.69
coord: 144..166
score: 68.04
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 113..249
e-value: 1.5E-44
score: 151.6
IPR001424Superoxide dismutase, copper/zinc binding domainGENE3D2.60.40.200coord: 104..253
e-value: 3.3E-50
score: 169.4
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 106..246
e-value: 5.05218E-57
score: 180.149
IPR001424Superoxide dismutase, copper/zinc binding domainSUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 106..250
IPR000742EGF-like domainSMARTSM00181egf_5coord: 29..63
e-value: 1.0
score: 18.3
coord: 68..101
e-value: 0.018
score: 24.2
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 26..63
score: 16.422
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 65..101
score: 13.35
NoneNo IPR availableGENE3D2.10.25.10coord: 65..103
e-value: 3.7E-8
score: 32.8
coord: 25..64
e-value: 9.2E-5
score: 22.0
NoneNo IPR availableCDDcd00054EGF_CAcoord: 71..101
e-value: 0.00888604
score: 31.8382
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 27..69
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 66..108
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 89..100
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 89..100
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 51..62
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00332SOD_CU_ZN_2coord: 238..249
IPR018152Superoxide dismutase, copper/zinc, binding sitePROSITEPS00087SOD_CU_ZN_1coord: 144..154

Blast
[Close]
BLAST of TCONS_00034962-protein vs. Swiss-Prot (Human)
Match: SODC (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 7.563e-44
Identity = 72/147 (48.98%), Postives = 97/147 (65.99%), Query Frame = 0 
Query:  105 EATCILTQSSTVSGTINIKQFR-NG-VRITGQVKGIPAGKHGFHVHQYGDLSNGCASFGGHFNPFGLTHGAPTDQIRHVGDLGNIVANSNDISNINIFDRQVSLVGKFNVFGRGLVIHAGVDDLGRGGDAGSLATGNAGSRLACCII 249
            +A C+L     V G IN +Q   NG V++ G +KG+  G HGFHVH++GD + GC S G HFNP    HG P D+ RHVGDLGN+ A+ + +++++I D  +SL G   + GR LV+H   DDLG+GG+  S  TGNAGSRLAC +I
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVI 150
The following BLAST results are available for this feature:
BLAST of TCONS_00034962-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SODC7.563e-4448.98Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
back to top