TCONS_00034961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034961
Unique NameTCONS_00034961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1981

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034961 ID=TCONS_00034961|Name=TCONS_00034961|organism=Clytia hemisphaerica|type=transcript|length=1981bp
CATAAAagcatcaaaaagaaaaaaaaaggaaaaatgctGGCGATAATTTG
GCTGCTGACTTTCCACATAGATGTCAGTTTAGCTCAACAAAATGTAGCAT
CACCAGACAGTATTGTTAGTCAAGATGAGATGACATATTTGACAGAAAAA
CTGTTCAGGAATTATAACAAGAAAGCGATACCGATCGTGAATGGTCAACC
AATAGAAGTGAAAGTTAAATTAGGAATATTGGACATGGTCCCCAAAGAGC
ATGCTAAATTGCATTTCTCAATGGATTCTTATATTCAATACAGATGGATA
GATCCTCGTTTGGAATTCAATTTCACCAAGGCTACAAAAGCTCGCTTTCT
AGCATATGATTGGAGAGTGTTAGAAGATCTATGGACACCAAATCTATACT
TTATCGAAGCCAAATTTGGTATGCAACATGAAATACCAGATCCTAACCTG
TTGGTCTTTATTTCACCTGATGGTGAAGTGCTACTTCATCGCAGGTTGAG
TATCACGTCATTTTGTCCAATGAAATTAGAGAAGTTCCCTTTTGATGTCC
AACATTGCAGTATGACCATCGAACCTTATTCATACCATACCGTTTATTTG
AGACTCGCCTGGGATCGTCTAACATGGCTCAATTTGGAATTACAAgattt
tgctgacgttagcattAAAATGAACAGTTTACCATTTTACAAATACACTC
CTATATCAGAAAAATCTTGGAGTCGTTTGGTCGTTAAATTTCAATTCCGT
CGTAACATCGATTTATATTTGTTCCGAGATTTCTTACCTTGTATTTTCAT
CGTTGCTTTATCATGGATAAACTTCTGGGTCAACTACCGAAGCACGCCCG
CACGTGTTTTATTGAGCATAACAACAGTTCTAACAATTGTAACAATGACC
AATCAAATACGATTAACATCTCCAAGTGAAGAGTTGTTTCGAAGTATAGA
CTATTATATGATGTTTtgtaatttatttgtttttgccGCCCTGTTGGAAA
CCACAATGGTTGGCATGACAGCACCCAATTCAAAGCCTGCTGATAGGTTA
CAACAAATAATGGATATTTTGCAGAACGATGATGATGACGACGATGATGA
AACACTTCATGAAACTCATGAACAACCTACGGGAGACGGGAACGAAGGAA
AGCAGAATGATAAGAAAGCAACAATAAACGAATTTCCCCTCATGGAAACA
TTTAAACTTGGTCCTCTACATTTCTACAAAGGTGAAACACATAATGTGGA
TAAATACAGCAGAATTTTATTTCCGTTGTCTTTTATGGTTTTCAATATCG
CATTTTTTGTGGCTCATCTTTTTGACAACACGGTATGGTCGACAAGTGCG
CATGCGTAAATATCTCAAGCAGgatgaaaagaattttgaaactaACACca
tttctttttattcagtCTTGAATTACACCGAACTTGGATTTTATTGCTGG
AAAGATAGTTTGATGAACATTTAAGAATTGATCTGACTAGTAAAATTTAA
CATAATTAAATAATTCTTCATCCAAATTACCAAATGAATATTTATTATAA
TTTACCAAATAGTTTTACAACAGTTTCACGTATAGCTTTGGACATAAAAA
AGCAAATCAAAGCATCACTGATAAACCCAAATCCAAACAATAAACCAATC
ACAAATAATGCGCTTCCCGGAATACGGAAACCAGTCAATTGTGCAAAACA
TAAAATCTGATCCGGAACaacaataaagaaaaagaaagtaaaaataatCA
GGACCGGAAGATTTATAATGCTTTTAACACTAGTCGAATTTTCCGGGATG
CTTGAAAATGCTTCAACCGGGATGATAGCATTACTGTTAAAACGTAGTCT
CATTCTTTTAACAGATTTTTTATGTAGTCGcattttgtataatatataAC
AATAAATCGGTAACGAGATAACCAGCAAAGTCCATTGACTCATTGGGTTT
AAGTATACTATGTTATTATATCTTATAGCAT
Run BLAST on NCBI

protein sequence of TCONS_00034961-protein

>TCONS_00034961-protein ID=TCONS_00034961-protein|Name=TCONS_00034961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
HKSIKKKKKGKMLAIIWLLTFHIDVSLAQQNVASPDSIVSQDEMTYLTEK
LFRNYNKKAIPIVNGQPIEVKVKLGILDMVPKEHAKLHFSMDSYIQYRWI
DPRLEFNFTKATKARFLAYDWRVLEDLWTPNLYFIEAKFGMQHEIPDPNL
LVFISPDGEVLLHRRLSITSFCPMKLEKFPFDVQHCSMTIEPYSYHTVYL
RLAWDRLTWLNLELQDFADVSIKMNSLPFYKYTPISEKSWSRLVVKFQFR
RNIDLYLFRDFLPCIFIVALSWINFWVNYRSTPARVLLSITTVLTIVTMT
NQIRLTSPSEELFRSIDYYMMFCNLFVFAALLETTMVGMTAPNSKPADRL
QQIMDILQNDDDDDDDETLHETHEQPTGDGNEGKQNDKKATINEFPLMET
FKLGPLHFYKGETHNVDKYSRILFPLSFMVFNIAFFVAHLFDNTVWSTSA
HA
Run BLAST on NCBI

transcript from alignment at sc0001236:24361..37435+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034961 ID=TCONS_00034961|Name=TCONS_00034961|organism=Clytia hemisphaerica|type=transcript|length=13075bp|location=Sequence derived from alignment at sc0001236:24361..37435+ (Clytia hemisphaerica)
CATAAAagcatcaaaaagaaaaaaaaaggaaaaatgctGGCGATAATTTG
GCTGCTGACTTTCCACATAGATGTCAGGTAGGGTCTATGACTTAAAACAA
TATAAATAGTAGATACACCGTAAACACGGCATCAATTCTTTAACACCCCC
AAACACTTTATTCAgctaaatatttcatttttaaacttCTTAAGTCATAA
CCATGTATCAATCTTTGTAAATTAtcaccaatttttttctttaaatttat
gACATAACGATTTCTTTCATCTATAGTCCATTTGGTGATAAACAAATCGA
CAACTAGATCCTTTTTTGTAGGGAGTTTCAAGCTCACGAAACTCGACATG
AAAGCTTTTAGCAGACTAGTAAATATTGTTGTGTCATCTTTAATTTTAGT
TTAGCTCAACAAAATGTAGCATCACCAGACAGTATTGTTAGTCAAGATGA
GATGACATATTTGACAGAAAAACTGTTCAGGAATTATAACAAGAAAGCGA
TACCGATCGTGAATGGTCAACCAATAGAAGTGAAAGTTAAATTAGGAATA
TTGGACATGGTCCCCAAAGAGCATGCTAAATTGGTAAGTTTTCATGAAAT
GTTTTCATGACCAACGACTTTTTATAAAGATacaatggagtctccataac
tcgaagacgcaaagagaattaaaatctgttcgagttatggaaatttcgTG
CTATATAAAGTGGTTTATGAGACtttgttaactgaaggaacgAGAAATCG
AGTCGAAGAGACATTCTTGTACTAGAGGCAAGGATTTATTaaacactgga
tatacaagtaacatatttttgccgatttctcatgtactagctatgtccgc
agtaatgatattattgtttacTCTCCTTCCCtcgttaaatgatttttcga
agcatttttattgcatttcttatcaaaaatcactcatccaattcccaaaa
gagacttaaaactttcctgtgagagNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNatgctaattataagtcgttatgacgtt
tcaagctgtgagaaagatgcaaaagacgtgttgtgtataagaaatttaat
gttgacaccggaaattttcaaacttcaACCTCAAAAAAACCACCTTGTCA
CCACGTGCCTCCAAAagattttcataccacagtggagccaagacactcaa
gtcttatgtatggtaaattcagctcttctggggacagtcttggaaatata
tttccaattgaaaattttgtgtcactataagcattttgtctgaatttctt
atctattgatgtttttctcacaatagatttcacaaatgtatccagcttgg
aatgctagccttactttcaaactttttttttctgcaaatgtacaaaaaga
aaaagctagagaactttttaaaaacaagactgataaacatttttaaaaat
cagacatcttcgagccgccatgacagttgtcctttgcggacaaagctaga
acatcaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaagct
agaacatcaattgttttctgaaacaatgaaaatacaatgatcgctctcca
tcgttttatgagtcgtttatccagtgtataataaatctttgctagaggca
taggcggttttagaccatgtcgaacttatctgagagatttgtaattgtaa
attcattgtcttttaacgagcgttgcactccttcgcatgtttccgacgta
cttgctctatatTGTTTTAAATCCGCCAGTGAGAGGATTGAGTTCTGGAG
ACTCTTCTGTACTGCTACTACCCTAAGATTGAAAAATTGTCCTTTGTGAG
ATAAATTATCAGAGCTTTTATCCACATTGAAAAACTAATTCTAATACAAA
CTAGAAAAGATAATACAATAAGTTTAAAAATATCCCCAACAATGTTCTTT
TTAAGCTCTTAGCATTTGAACTCACTCATTAACTAGCGGACACTTTTGGT
CCCATTTGCATCTTCGATTTACCCTCCCCCTCCCTGCATATTTAAACTCT
CTCACCCGGTTACTGAGACCTGATACAGACATCATTAGACAAAAATATCA
CTGAAATATGAAAATCAGAGTGCACTTAACATATTCGCTGCCAACTACGA
TTATTCTCGTAACAAAGAGTCAAAATACCGGTGCTACTTCAAAGAGCAAT
AACTTTTGACACTGAAACTTTTCCTTgcttttttattgaattttttaaat
ctatgtgtaaaatttgtaaaatttgaagTATTTGAAGCAAATCTGAAGCA
ACAGAAACCTCTCTCAAATTCAAACTTCCGATGAAATTCCGAGATGTCAA
AGTTTCCATTTCTGAAGAAGGTTCAGCAGTGAATGTGACAATTTGTTCTT
AATAGACCtcttcataaattacgtcacaaacatcacttgcctcgtattca
aacaattaccatggtgattatgtctcttgagacattaaatgattttttta
ttatgaataggaagtagttttaataaaatccgctggNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNaaatagtgacgatctattaaaataagtcgtttgttt
cttataaaaaaacgtttagaaaccaaaatttcatgcccttgaaatattct
ttcatattcaagataGTAGGGGGCCAAACCTTAGGATCCGTGACAACTTT
TCTGGGACGCAACAACACGAATTTATTTCGAAAGTTTAATGtatttaaag
tcattttagCGAGGGGGGTCCGCTGCTAAGGcctggcaaaattttttatg
ggcCAAAGACTGACGTTACAGGCAAAGCTGtaaaggcaaaaaatgggtaa
aaaaattgacgatttttgaaagtCATATTCAACGGAAACGATCGATACCA
TcggatagagcatgaaattctgagcaaaaaagtatactacaaCAAGTCCC
ATACTTAAACACACAAGGAAATACGGCCATTTGAAGTTTGAAATACTGTC
AGTTTGAatacgattgacgtcaaattttgtctaaatcatAAACAAACTGA
CAGTATTTTGAACTTAAAATAGCCGTATTTCTTCGTGTGTTTGAGTAAGG
GACTTGttgtagtatacttttttgctcaaaatttcaCGCTCTATCGGATG
GTATCGATCGTTTCCGTTGAAAACGactttcaaaaatcgtcaatttttta
cccattttttgcctttaCAGCTTTGCCTGTAACGTCAGTCTTTGGCCCAT
AAAGAATTTTGCCAGGCCTTAGCAGCGGACCCCCCTCGctaaaatgactt
taaataCATTAAACTTTCGAAATAAATTCGTGTTGTTGCGTCCCAGAAAA
GTTGTCACGGATCCTAAGGTTTGGCCCCCTACtatgggagttaatcacca
tggcaataatttcaaaacgaggcaagtgatgttcgtaacgtaatttatga
tgAAACGGTCTATAGGCTAAGATTGATGGTCTtataaatttcaaccattt
tggtatgaaaactttttctcttttggTTTCTTCTTCAGCATTTCTCAATG
GATTCTTATATTCAATACAGATGGATAGATCCTCGTTTGGAATTCAATTT
CACCAAGGCTACAAAAGCTCGCTTTCTAGCATATGATTGGAGAGTGTTAG
AAGATCTATGGACACCAAATCTATACTTTATCGAAGCCAAATTTGGTATG
CAACATGAAATACCAGATCCTAACCTGTTGGTCTTTATTTCACCTGATGG
TGAAGTGCTACTTCATCGCAGGTAACCACTGATCTTTACTAACCTTGGAC
TAAGCTATATctaccatctttgatcgaatactttttgaaagtggtaaACC
AAAGACGCCGTTGCGGTGTTGAAAATTAGTATTAAACAGTGCTATGTCAT
AGCAAGGTATCCAAGGAATgaatttacaccgctattgtgTAGTgttacca
tagtataagaaagccgcggctggaatgatgacgctattgtttttgtcgta
aatggatgttctatctgtgtctccgtggtttataagaactaagtcgAAGG
TAACAAAATCCTTAACCTTAAAAGTGTTTATAATAGACAATTGAAGAACA
ACTACTTTTCAAGTCTCAATTTTTTCCCACTATCCTCTCATTATTACCTT
ATTTGagagtatatttttataaattccaaataaatttttataaatttagg
accaaataacacacattttattaaaagaactattttccaaatgttaaact
ttgaatgcttgctgtcacctcaatactgttgtttttcgaatggaattttc
acagaatgcagCTTGAATATNNGAggcactcaattttcttcaagttctta
aagcactgaatttttgacgttctagtacttttaaaccaagagtcttttct
tttactttgatgtTATGAATGCTTGAATTAGCAAGAGATTTGTgtttatg
agcaaaattacgtctaacgaggtagtttgttaaaagtcaaattaaattga
caaaagaaattgtcactgaaccataaaaaaatgcgttcttacgacataga
tagaacaacagaaatttagctgtactcattccagccgcggctttcttata
ctatggtgttACCATTAGCACCACTTTCAATCAACAccaatcaaagattt
tggttgacCGGTATTAAGAAACTGCCACCAGTGGTTATATAAAGCTCAGT
GACGCAACATTGTTTggacgtttttctaacgttagatggacgttatgaat
gttgAACGGTTGTCGAAATTTTGTACTAGTGCAAACTCGAACCCTCTTAG
TTCGCTTTTATTAAAATTCTTATGGCACTCTTGTACTACGTTCattagta
aaatcaaaaagaccCAAGAGGCTCTTGGTTCGAGATTGGTGCTAGTTGGA
AGCAAACTTCTGTGTAGAAGGAGCTTAAGAATTGAAGGTTTCAATTTCCA
ACTATTGGTTAAACTAGAGCTGCTTTTCAACGAGTTGTAACTGGTTTACA
AAAACATGATTGTCTATACTCTTACTGTACAAATATATTGTATACATATT
TAGTATGACAAAAAtatcagtgaaaatgaaaagcCTAACCATTCCTTtaa
taaaattgtattttgtgaaatttatcGTTGGTCAACCAATATAATAATCT
TTTTCTTAGGTTGAGTATCACGTCATTTTGTCCAATGAAATTAGAGAAGT
TCCCTTTTGATGTCCAACATTGCAGTATGACCATCGAACCTTGTAAGTTT
AAATGCTTCAAAAAAATTGGTGCAATTTACCTGCAAACAATCGATGAAAT
CATTGTAAGCAGTGGCCTTATTTAGGTCCGGTGATTGGCAAATTTCGCAG
TTCCAAGGCACGAAGAAATTTCAATTTACCGGTCCAACAATTCTATTCGC
CACAACAAGTTTATATCCATGCTTATCATTACTCTGAGCTCCGCTAAGAA
TTTATTAATCTAGAAGCTAGAATTTGTCTAATACATATTTTTCTATTCGG
TAGCCAATCAAAAAGCAAAGCAAAACACCTGTATGGGTTGATACTGTCAC
CTGCTAAAATTGATCTCAGTCTAGTTTTTTTGATtctgatacacgctttt
ttttataagaatggtgtaaatccattccatcatggatattcttaactttt
ttgggaaaattatcctaaaatattcgtacagcattcttaggttaggatcc
taattcagactagatttaacatttagtacatacgtctcaaggataaaatg
gcatttttgtgaaaggaatgagccttacttggggttaattgacaatttat
aattgaacatgctctaaaaatggcattcttaggtttagctgccaaattcc
atgatggtaatattcttagcatattcttaattttttggccattttcatca
tggacattcttataaagtgcattcttataaaaacaagaatcgcaaaattg
cgactaaatatttccttaaaaatgaaggtcattattgacatatataaaaa
agggATAATTAGCCTTAGTAAAAGAAAGGTGAGAGTTACAAGTTACGTGG
TTCTAAAGGTTCCTCCAAGTTCTTGTTTACGACTATGagaatcaaacaaa
tacaattttGAAATCGAGATGTAATTGCCTTCAATAACAAGGAAGTTTTT
ATCAATAATGTCATCTTTGTCAGAAAGTATTTCAACAGAAAAATCAACTT
GTCCAATGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNgggcgtacggaaggcgttttgacac
gggaaattattatgacggagaaagcccgttttaacaaatatttccctttt
ggaaaacgggaaatatttaaaaagcgTGTAGCGCTCACGAAAGGAAAGTA
TCACGCTCATCATTATATtacacacccctttctcacagccccggtgggct
aaaactcgatggggattgatatccTATATTGTTCatgactggggatttga
attccattgtttacGAGTCGGAAAATTAAGTGAGGattgaaaaaatagca
caaaaattagagtataattttccactagggacgatattttggccaatttt
tccagtgggtctgtgagaaagggtgtTATTAcaatcaaaaagtaataaaa
gtggCCTTGACGAGATAGNggtgggaagggttcccagtgggtctgtgaga
aagggtgtTATTAcaatcaaaaagtaataaaagtggCCTTGACGAGATAG
AGTAATCAGATGGATATGAAAATACACTGTTTAAAAGACTTatattacct
taagtggataaattttggcgtggatttaatttggcgattggccaaaatac
gatttttggcggggatttaattttgcgaatcggaaattttgtcacactga
aatgggtgaaaattactcaaaaatatactaaaaagttgtgaatTTTCACA
TAATCctcctttttttaaatttggcggggatttaatttggcgaattgccg
aatttggaaattttggcgaggatttatcgccaaatttaattcccgccaaa
atttatccacttaaggtagttgGAAAGGCCCTTGAAATGGCGGTTAAACT
TATCTTTATATTCTAGATTCATACCATACCGTTTATTTGAGACTCGCCTG
GGATCGTCTAACATGGCTCAATTTGGAATTACAAgattttgctgacgtta
gcattAAAATGAACAGTTTACCATTTTACAAATACACTCCTATATCAGAA
AGtaattgttgaaaaattcatTGTTGTTACATaatatttcacaaaatttt
tttgaaattctgctGGTGTTTTTCATAGCGTACCTTTCTTGGACCCTTCT
GCATTAATTTAATTTATCCTAATTAGTAATAGAACTTTGCGAATAAATTA
TCGTCTTGATTTTTGTACGCTTAACAGTCAGCAACACTTTATCGGAATGG
CAAGTATTGCCTCAGACCATGTTCACGAAacaaacggttccgaaacaaat
gtgaacgtcaaaattcgaaacgtcaaaaaagaagacgttagacgttacaa
agcaaaacagatcgaaacggtttcgctccactattttcatcggaacggaa
ctgctctgttttcttgctccgaaacgttccgaaaccaatattaacacact
cgatccgtaacgaaaatcataccagaGTGAAatggaacagtaacgtgtga
acatggtctcaaCGGGAAAAAGCTCTCGAACGGGAAGTTTGAAAACTTGA
TTCTTGATTTGGTATTTATTTCCGGAACGGAGCACGAAAAATCGgtggaa
aattcaagatggtggCTAAAAAAGGTGACAAAAGTAATATTTCCTTTTCG
GGCACCATCACCTTCCTTTTCGTGAACTAATTCCCGTGATGGCAATTCTT
ACCATTTCGATATAATTTATTGCCGACTGctaaatataaaagttaaaaat
cttaagaataatacactttttaatttgttttaaatacAGAATCTTGGAGT
CGTTTGGTCGTTAAATTTCAATTCCGTCGTAACATCGATTTATATTTGTT
CCGAGATTTCTTACCTTGTATTTTCATCGTTGCTTTATCATGGATAAACT
TCTGGGTCAACTACCGAAGCACGCCCGCACGTGTTTTATTGAGCATAACA
ACAGTTCTAACAATTGTAACAATGACCAATCAAATACGATTAACATCTCC
AAGTGAAGAGTTGTTTCGAAGTATAGACTATTATATGATGTTTtgtaatt
tatttgtttttgccGCCCTGTTGGAAACCACAATGGTTGGCATGACAGCA
CCCAATTCAAAGCCTGCTGATAGGTTACAACAAATAATGGATATTTTGCA
GAACGATGATGATGACGACGATGATGAAACACTTCATGAAACTCATGTGA
GTAAAAATTCCGAATGAATTAATCTTTTGTGAGAGCACTTTTAGGTCTCT
ATTCTACACCATTTACAATTTATAGTACATTGTTAGTGAAGtgtcttctt
aactcgaacctctgcAACTCCAAATtcattaactcgaacaaatgtCGGTG
CTAGTTCGAGCTATGGAGACTTCGATGTATTAGTTAACTCCAGACGAGAA
AAATGCGTTTTTTAATATTCGCTTTAGTGTTTTCGAGAAACGTCAAGTCA
TTGGACTCGGAAAGAGCAATCTCTTGAGGTTTATCACGAGTATAGTACGT
TTATCTTATTCGCAATATTGTAGATTTCATGTTCTTTACATTTCTTCATT
CAGGttggtttctttatttttatgtgTTATTGTGTAGGGATTTGATTTAG
TCACTGTGCAAGTTGAAGTTTGTTAGTGTAAAAGTGAAATACATTTGGTT
TGTAAATAAAGCTTTGTAGTTGAATGCTGTCACTCTAGCGAAGTTTTCGG
CCCTTATTCAATAGAACTTCATCGTGACAGGGGGCCAGATTGTTCAGaga
attttaacaaaattctcaaatatttcccttttatGGTACCCAAAGTCTGT
CAGTTTTCCCAAGTTGATAGCAAAACGAACTCTTAAGATGAATtctcatt
ttttcatcaaatataaTCTTGAGAAAACAATCTccgtaatttaaaccact
tatTTATTCATAGGAACAACCTACGGGAGACGGGAACGAAGGAAAGCAGA
ATGATAAGAAAGCAACAATAAACGAATTTCCCCTCATGGAAACATTTAAA
CTTGGTCCTCTACATTTCTACAAAGGTGAAACACATAATGTGGATAAATA
CAGCAGAATTTTATTTCCGTTGTCTTTTATGGTTTTCAATATCGCATTTT
TTGTGGCTCATCTTTTTGACAACACGGTATGGTCGACAAGTGCGCATGCG
TAAATATCTCAAGCAGgatgaaaagaattttgaaactaACACcatttctt
tttattcagtCTTGAATTACACCGAACTTGGATTTTATTGCTGGAAAGAT
AGTTTGATGAACATTTAAGAATTGATCTGACTAGTAAAATTTAACATAAT
TAAATAATTCTTCATCCAAATTACCAAATGAATATTTATTATAATTTACC
AAATAGTTTTACAACAGTTTCACGTATAGCTTTGGACATAAAAAAGCAAA
TCAAAGCATCACTGATAAACCCAAATCCAAACAATAAACCAATCACAAAT
AATGCGCTTCCCGGAATACGGAAACCAGTCAATTGTGCAAAACATAAAAT
CTGATCCGGAACaacaataaagaaaaagaaagtaaaaataatCAGGACCG
GAAGATTTATAATGCTTTTAACACTAGTCGAATTTTCCGGGATGCTTGAA
AATGCTTCAACCGGGATGATAGCATTACTGTTAAAACGTAGTCTCATTCT
TTTAACAGATTTTTTATGTAGTCGcattttgtataatatataACAATAAA
TCGGTAACGAGATAACCAGCAAAGTCCATTGACTCATTGGGTTTAAGTAT
ACTATGTTATTATATCTTATAGCAT

Coding sequence (CDS) from alignment at sc0001236:24361..37435+

>TCONS_00034961 ID=TCONS_00034961|Name=TCONS_00034961|organism=Clytia hemisphaerica|type=CDS|length=9513bp|location=Sequence derived from alignment at sc0001236:24361..37435+ (Clytia hemisphaerica)
CATAAAagcatcaaaaagaaaaaaaaaggaaaaatgctGGCGATAATTTG
GCTGCTGACTTTCCACATAGATGTCAGTTTAGCTCAACAAAATGTAGCAT
CACCAGACAGTATTGTTAGTCAAGATGAGATGACATATTTGACAGAAAAA
CTGTTCAGGAATTATAACAAGAAAGCGATACCGATCGTGAATGGTCAACC
AATAGAAGTGAAAGTTAAATTAGGAATATTGGACATGGTCCCCAAAGAGC
ATGCTAAATTGCATTTCTCAATGGATTCTTATATTCAATACAGATGGATA
GATCCTCGTTTGGAATTCAATTTCACCAAGGCTACAAAAGCTCGCTTTCT
AGCATATGATTGGAGAGTGTTAGAAGATCTATGGACACCAAATCTATACT
TTATCGAAGCCAAATTTGGTATGCAACATGAAATACCAGATCCTAACCTG
TTGGTCTTTATTTCACCTGATGGTGAAGTGCTACTTCATCGCAGGTTGAG
TATCACGTCATTTTGTCCAATGAAATTAGAGAAGTTCCCTTTTGATGTCC
AACATTGCAGTATGACCATCGAACCTTATTCATACCATACCGTTTATTTG
AGACTCGCCTGGGATCGTCTAACATGGCTCAATTTGGAATTACAAgattt
tgctgacgttagcattAAAATGAACAGTTTACCATTTTACAAATACACTC
CTATATCAGAAAAATCTTGGAGTCGTTTGGTCGTTAAATTTCAATTCCGT
CGTAACATCGATTTATATTTGTTCCGAGATTTCTTACCTTGTATTTTCAT
CGTTGCTTTATCATGGATAAACTTCTGGGTCAACTACCGAAGCACGCCCG
CACGTGTTTTATTGAGCATAACAACAGTTCTAACAATTGTAACAATGACC
AATCAAATACGATTAACATCTCCAAGTGAAGAGTTGTTTCGAAGTATAGA
CTATTATATGATGTTTtgtaatttatttgtttttgccGCCCTGTTGGAAA
CCACAATGGTTGGCATGACAGCACCCAATTCAAAGCCTGCTGATAGGTTA
CAACAAATAATGGATATTTTGCAGAACGATGATGATGACGACGATGATGA
AACACTTCATGAAACTCATGAACAACCTACGGGAGACGGGAACGAAGGAA
AGCAGAATGATAAGAAAGCAACAATAAACGAATTTCCCCTCATGGAAACA
TTTAAACTTGGTCCTCTACATTTCTACAAAGGTGAAACACATAATGTGGA
TAAATACAGCAGAATTTTATTTCCGTTGTCTTTTATGGTTTTCAATATCG
CATTTTTTGTGGCTCATCTTTTTGACAACACGGTATGGTCGACAAGTGCG
CATGCGTAACATAAAagcatcaaaaagaaaaaaaaaggaaaaatgctGGC
GATAATTTGGCTGCTGACTTTCCACATAGATGTCAGTTTAGCTCAACAAA
ATGTAGCATCACCAGACAGTATTGTTAGTCAAGATGAGATGACATATTTG
ACAGAAAAACTGTTCAGGAATTATAACAAGAAAGCGATACCGATCGTGAA
TGGTCAACCAATAGAAGTGAAAGTTAAATTAGGAATATTGGACATGGTCC
CCAAAGAGCATGCTAAATTGCATTTCTCAATGGATTCTTATATTCAATAC
AGATGGATAGATCCTCGTTTGGAATTCAATTTCACCAAGGCTACAAAAGC
TCGCTTTCTAGCATATGATTGGAGAGTGTTAGAAGATCTATGGACACCAA
ATCTATACTTTATCGAAGCCAAATTTGGTATGCAACATGAAATACCAGAT
CCTAACCTGTTGGTCTTTATTTCACCTGATGGTGAAGTGCTACTTCATCG
CAGGTTGAGTATCACGTCATTTTGTCCAATGAAATTAGAGAAGTTCCCTT
TTGATGTCCAACATTGCAGTATGACCATCGAACCTTATTCATACCATACC
GTTTATTTGAGACTCGCCTGGGATCGTCTAACATGGCTCAATTTGGAATT
ACAAgattttgctgacgttagcattAAAATGAACAGTTTACCATTTTACA
AATACACTCCTATATCAGAAAAATCTTGGAGTCGTTTGGTCGTTAAATTT
CAATTCCGTCGTAACATCGATTTATATTTGTTCCGAGATTTCTTACCTTG
TATTTTCATCGTTGCTTTATCATGGATAAACTTCTGGGTCAACTACCGAA
GCACGCCCGCACGTGTTTTATTGAGCATAACAACAGTTCTAACAATTGTA
ACAATGACCAATCAAATACGATTAACATCTCCAAGTGAAGAGTTGTTTCG
AAGTATAGACTATTATATGATGTTTtgtaatttatttgtttttgccGCCC
TGTTGGAAACCACAATGGTTGGCATGACAGCACCCAATTCAAAGCCTGCT
GATAGGTTACAACAAATAATGGATATTTTGCAGAACGATGATGATGACGA
CGATGATGAAACACTTCATGAAACTCATGAACAACCTACGGGAGACGGGA
ACGAAGGAAAGCAGAATGATAAGAAAGCAACAATAAACGAATTTCCCCTC
ATGGAAACATTTAAACTTGGTCCTCTACATTTCTACAAAGGTGAAACACA
TAATGTGGATAAATACAGCAGAATTTTATTTCCGTTGTCTTTTATGGTTT
TCAATATCGCATTTTTTGTGGCTCATCTTTTTGACAACACGGTATGGTCG
ACAAGTGCGCATGCGTAACATAAAagcatcaaaaagaaaaaaaaaggaaa
aatgctGGCGATAATTTGGCTGCTGACTTTCCACATAGATGTCAGTTTAG
CTCAACAAAATGTAGCATCACCAGACAGTATTGTTAGTCAAGATGAGATG
ACATATTTGACAGAAAAACTGTTCAGGAATTATAACAAGAAAGCGATACC
GATCGTGAATGGTCAACCAATAGAAGTGAAAGTTAAATTAGGAATATTGG
ACATGGTCCCCAAAGAGCATGCTAAATTGCATTTCTCAATGGATTCTTAT
ATTCAATACAGATGGATAGATCCTCGTTTGGAATTCAATTTCACCAAGGC
TACAAAAGCTCGCTTTCTAGCATATGATTGGAGAGTGTTAGAAGATCTAT
GGACACCAAATCTATACTTTATCGAAGCCAAATTTGGTATGCAACATGAA
ATACCAGATCCTAACCTGTTGGTCTTTATTTCACCTGATGGTGAAGTGCT
ACTTCATCGCAGGTTGAGTATCACGTCATTTTGTCCAATGAAATTAGAGA
AGTTCCCTTTTGATGTCCAACATTGCAGTATGACCATCGAACCTTATTCA
TACCATACCGTTTATTTGAGACTCGCCTGGGATCGTCTAACATGGCTCAA
TTTGGAATTACAAgattttgctgacgttagcattAAAATGAACAGTTTAC
CATTTTACAAATACACTCCTATATCAGAAAAATCTTGGAGTCGTTTGGTC
GTTAAATTTCAATTCCGTCGTAACATCGATTTATATTTGTTCCGAGATTT
CTTACCTTGTATTTTCATCGTTGCTTTATCATGGATAAACTTCTGGGTCA
ACTACCGAAGCACGCCCGCACGTGTTTTATTGAGCATAACAACAGTTCTA
ACAATTGTAACAATGACCAATCAAATACGATTAACATCTCCAAGTGAAGA
GTTGTTTCGAAGTATAGACTATTATATGATGTTTtgtaatttatttgttt
ttgccGCCCTGTTGGAAACCACAATGGTTGGCATGACAGCACCCAATTCA
AAGCCTGCTGATAGGTTACAACAAATAATGGATATTTTGCAGAACGATGA
TGATGACGACGATGATGAAACACTTCATGAAACTCATGAACAACCTACGG
GAGACGGGAACGAAGGAAAGCAGAATGATAAGAAAGCAACAATAAACGAA
TTTCCCCTCATGGAAACATTTAAACTTGGTCCTCTACATTTCTACAAAGG
TGAAACACATAATGTGGATAAATACAGCAGAATTTTATTTCCGTTGTCTT
TTATGGTTTTCAATATCGCATTTTTTGTGGCTCATCTTTTTGACAACACG
GTATGGTCGACAAGTGCGCATGCGTAACATAAAagcatcaaaaagaaaaa
aaaaggaaaaatgctGGCGATAATTTGGCTGCTGACTTTCCACATAGATG
TCAGTTTAGCTCAACAAAATGTAGCATCACCAGACAGTATTGTTAGTCAA
GATGAGATGACATATTTGACAGAAAAACTGTTCAGGAATTATAACAAGAA
AGCGATACCGATCGTGAATGGTCAACCAATAGAAGTGAAAGTTAAATTAG
GAATATTGGACATGGTCCCCAAAGAGCATGCTAAATTGCATTTCTCAATG
GATTCTTATATTCAATACAGATGGATAGATCCTCGTTTGGAATTCAATTT
CACCAAGGCTACAAAAGCTCGCTTTCTAGCATATGATTGGAGAGTGTTAG
AAGATCTATGGACACCAAATCTATACTTTATCGAAGCCAAATTTGGTATG
CAACATGAAATACCAGATCCTAACCTGTTGGTCTTTATTTCACCTGATGG
TGAAGTGCTACTTCATCGCAGGTTGAGTATCACGTCATTTTGTCCAATGA
AATTAGAGAAGTTCCCTTTTGATGTCCAACATTGCAGTATGACCATCGAA
CCTTATTCATACCATACCGTTTATTTGAGACTCGCCTGGGATCGTCTAAC
ATGGCTCAATTTGGAATTACAAgattttgctgacgttagcattAAAATGA
ACAGTTTACCATTTTACAAATACACTCCTATATCAGAAAAATCTTGGAGT
CGTTTGGTCGTTAAATTTCAATTCCGTCGTAACATCGATTTATATTTGTT
CCGAGATTTCTTACCTTGTATTTTCATCGTTGCTTTATCATGGATAAACT
TCTGGGTCAACTACCGAAGCACGCCCGCACGTGTTTTATTGAGCATAACA
ACAGTTCTAACAATTGTAACAATGACCAATCAAATACGATTAACATCTCC
AAGTGAAGAGTTGTTTCGAAGTATAGACTATTATATGATGTTTtgtaatt
tatttgtttttgccGCCCTGTTGGAAACCACAATGGTTGGCATGACAGCA
CCCAATTCAAAGCCTGCTGATAGGTTACAACAAATAATGGATATTTTGCA
GAACGATGATGATGACGACGATGATGAAACACTTCATGAAACTCATGAAC
AACCTACGGGAGACGGGAACGAAGGAAAGCAGAATGATAAGAAAGCAACA
ATAAACGAATTTCCCCTCATGGAAACATTTAAACTTGGTCCTCTACATTT
CTACAAAGGTGAAACACATAATGTGGATAAATACAGCAGAATTTTATTTC
CGTTGTCTTTTATGGTTTTCAATATCGCATTTTTTGTGGCTCATCTTTTT
GACAACACGGTATGGTCGACAAGTGCGCATGCGTAACATAAAagcatcaa
aaagaaaaaaaaaggaaaaatgctGGCGATAATTTGGCTGCTGACTTTCC
ACATAGATGTCAGTTTAGCTCAACAAAATGTAGCATCACCAGACAGTATT
GTTAGTCAAGATGAGATGACATATTTGACAGAAAAACTGTTCAGGAATTA
TAACAAGAAAGCGATACCGATCGTGAATGGTCAACCAATAGAAGTGAAAG
TTAAATTAGGAATATTGGACATGGTCCCCAAAGAGCATGCTAAATTGCAT
TTCTCAATGGATTCTTATATTCAATACAGATGGATAGATCCTCGTTTGGA
ATTCAATTTCACCAAGGCTACAAAAGCTCGCTTTCTAGCATATGATTGGA
GAGTGTTAGAAGATCTATGGACACCAAATCTATACTTTATCGAAGCCAAA
TTTGGTATGCAACATGAAATACCAGATCCTAACCTGTTGGTCTTTATTTC
ACCTGATGGTGAAGTGCTACTTCATCGCAGGTTGAGTATCACGTCATTTT
GTCCAATGAAATTAGAGAAGTTCCCTTTTGATGTCCAACATTGCAGTATG
ACCATCGAACCTTATTCATACCATACCGTTTATTTGAGACTCGCCTGGGA
TCGTCTAACATGGCTCAATTTGGAATTACAAgattttgctgacgttagca
ttAAAATGAACAGTTTACCATTTTACAAATACACTCCTATATCAGAAAAA
TCTTGGAGTCGTTTGGTCGTTAAATTTCAATTCCGTCGTAACATCGATTT
ATATTTGTTCCGAGATTTCTTACCTTGTATTTTCATCGTTGCTTTATCAT
GGATAAACTTCTGGGTCAACTACCGAAGCACGCCCGCACGTGTTTTATTG
AGCATAACAACAGTTCTAACAATTGTAACAATGACCAATCAAATACGATT
AACATCTCCAAGTGAAGAGTTGTTTCGAAGTATAGACTATTATATGATGT
TTtgtaatttatttgtttttgccGCCCTGTTGGAAACCACAATGGTTGGC
ATGACAGCACCCAATTCAAAGCCTGCTGATAGGTTACAACAAATAATGGA
TATTTTGCAGAACGATGATGATGACGACGATGATGAAACACTTCATGAAA
CTCATGAACAACCTACGGGAGACGGGAACGAAGGAAAGCAGAATGATAAG
AAAGCAACAATAAACGAATTTCCCCTCATGGAAACATTTAAACTTGGTCC
TCTACATTTCTACAAAGGTGAAACACATAATGTGGATAAATACAGCAGAA
TTTTATTTCCGTTGTCTTTTATGGTTTTCAATATCGCATTTTTTGTGGCT
CATCTTTTTGACAACACGGTATGGTCGACAAGTGCGCATGCGTAACATAA
AagcatcaaaaagaaaaaaaaaggaaaaatgctGGCGATAATTTGGCTGC
TGACTTTCCACATAGATGTCAGTTTAGCTCAACAAAATGTAGCATCACCA
GACAGTATTGTTAGTCAAGATGAGATGACATATTTGACAGAAAAACTGTT
CAGGAATTATAACAAGAAAGCGATACCGATCGTGAATGGTCAACCAATAG
AAGTGAAAGTTAAATTAGGAATATTGGACATGGTCCCCAAAGAGCATGCT
AAATTGCATTTCTCAATGGATTCTTATATTCAATACAGATGGATAGATCC
TCGTTTGGAATTCAATTTCACCAAGGCTACAAAAGCTCGCTTTCTAGCAT
ATGATTGGAGAGTGTTAGAAGATCTATGGACACCAAATCTATACTTTATC
GAAGCCAAATTTGGTATGCAACATGAAATACCAGATCCTAACCTGTTGGT
CTTTATTTCACCTGATGGTGAAGTGCTACTTCATCGCAGGTTGAGTATCA
CGTCATTTTGTCCAATGAAATTAGAGAAGTTCCCTTTTGATGTCCAACAT
TGCAGTATGACCATCGAACCTTATTCATACCATACCGTTTATTTGAGACT
CGCCTGGGATCGTCTAACATGGCTCAATTTGGAATTACAAgattttgctg
acgttagcattAAAATGAACAGTTTACCATTTTACAAATACACTCCTATA
TCAGAAAAATCTTGGAGTCGTTTGGTCGTTAAATTTCAATTCCGTCGTAA
CATCGATTTATATTTGTTCCGAGATTTCTTACCTTGTATTTTCATCGTTG
CTTTATCATGGATAAACTTCTGGGTCAACTACCGAAGCACGCCCGCACGT
GTTTTATTGAGCATAACAACAGTTCTAACAATTGTAACAATGACCAATCA
AATACGATTAACATCTCCAAGTGAAGAGTTGTTTCGAAGTATAGACTATT
ATATGATGTTTtgtaatttatttgtttttgccGCCCTGTTGGAAACCACA
ATGGTTGGCATGACAGCACCCAATTCAAAGCCTGCTGATAGGTTACAACA
AATAATGGATATTTTGCAGAACGATGATGATGACGACGATGATGAAACAC
TTCATGAAACTCATGAACAACCTACGGGAGACGGGAACGAAGGAAAGCAG
AATGATAAGAAAGCAACAATAAACGAATTTCCCCTCATGGAAACATTTAA
ACTTGGTCCTCTACATTTCTACAAAGGTGAAACACATAATGTGGATAAAT
ACAGCAGAATTTTATTTCCGTTGTCTTTTATGGTTTTCAATATCGCATTT
TTTGTGGCTCATCTTTTTGACAACACGGTATGGTCGACAAGTGCGCATGC
GTAACATAAAagcatcaaaaagaaaaaaaaaggaaaaatgctGGCGATAA
TTTGGCTGCTGACTTTCCACATAGATGTCAGTTTAGCTCAACAAAATGTA
GCATCACCAGACAGTATTGTTAGTCAAGATGAGATGACATATTTGACAGA
AAAACTGTTCAGGAATTATAACAAGAAAGCGATACCGATCGTGAATGGTC
AACCAATAGAAGTGAAAGTTAAATTAGGAATATTGGACATGGTCCCCAAA
GAGCATGCTAAATTGCATTTCTCAATGGATTCTTATATTCAATACAGATG
GATAGATCCTCGTTTGGAATTCAATTTCACCAAGGCTACAAAAGCTCGCT
TTCTAGCATATGATTGGAGAGTGTTAGAAGATCTATGGACACCAAATCTA
TACTTTATCGAAGCCAAATTTGGTATGCAACATGAAATACCAGATCCTAA
CCTGTTGGTCTTTATTTCACCTGATGGTGAAGTGCTACTTCATCGCAGGT
TGAGTATCACGTCATTTTGTCCAATGAAATTAGAGAAGTTCCCTTTTGAT
GTCCAACATTGCAGTATGACCATCGAACCTTATTCATACCATACCGTTTA
TTTGAGACTCGCCTGGGATCGTCTAACATGGCTCAATTTGGAATTACAAg
attttgctgacgttagcattAAAATGAACAGTTTACCATTTTACAAATAC
ACTCCTATATCAGAAAAATCTTGGAGTCGTTTGGTCGTTAAATTTCAATT
CCGTCGTAACATCGATTTATATTTGTTCCGAGATTTCTTACCTTGTATTT
TCATCGTTGCTTTATCATGGATAAACTTCTGGGTCAACTACCGAAGCACG
CCCGCACGTGTTTTATTGAGCATAACAACAGTTCTAACAATTGTAACAAT
GACCAATCAAATACGATTAACATCTCCAAGTGAAGAGTTGTTTCGAAGTA
TAGACTATTATATGATGTTTtgtaatttatttgtttttgccGCCCTGTTG
GAAACCACAATGGTTGGCATGACAGCACCCAATTCAAAGCCTGCTGATAG
GTTACAACAAATAATGGATATTTTGCAGAACGATGATGATGACGACGATG
ATGAAACACTTCATGAAACTCATGAACAACCTACGGGAGACGGGAACGAA
GGAAAGCAGAATGATAAGAAAGCAACAATAAACGAATTTCCCCTCATGGA
AACATTTAAACTTGGTCCTCTACATTTCTACAAAGGTGAAACACATAATG
TGGATAAATACAGCAGAATTTTATTTCCGTTGTCTTTTATGGTTTTCAAT
ATCGCATTTTTTGTGGCTCATCTTTTTGACAACACGGTATGGTCGACAAG
TGCGCATGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020353XLOC_020353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034961-exon-sc0001236-1491911889:24361..24437TCONS_00034961-exon-sc0001236-1491911889:24361..24437Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:24361..24437TCONS_00034961-exon-sc0001236-1510915933:24361..24437Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:24361..24437TCONS_00034961-exon-sc0001236-1575043694:24361..24437Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1491911889:24760..24943TCONS_00034961-exon-sc0001236-1491911889:24760..24943Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:24760..24943TCONS_00034961-exon-sc0001236-1510915933:24760..24943Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:24760..24943TCONS_00034961-exon-sc0001236-1575043694:24760..24943Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1491911889:29049..29281TCONS_00034961-exon-sc0001236-1491911889:29049..29281Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:29049..29281TCONS_00034961-exon-sc0001236-1510915933:29049..29281Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:29049..29281TCONS_00034961-exon-sc0001236-1575043694:29049..29281Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1491911889:30670..30752TCONS_00034961-exon-sc0001236-1491911889:30670..30752Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:30670..30752TCONS_00034961-exon-sc0001236-1510915933:30670..30752Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:30670..30752TCONS_00034961-exon-sc0001236-1575043694:30670..30752Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1491911889:34577..34711TCONS_00034961-exon-sc0001236-1491911889:34577..34711Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:34577..34711TCONS_00034961-exon-sc0001236-1510915933:34577..34711Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:34577..34711TCONS_00034961-exon-sc0001236-1575043694:34577..34711Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1491911889:35450..35856TCONS_00034961-exon-sc0001236-1491911889:35450..35856Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:35450..35856TCONS_00034961-exon-sc0001236-1510915933:35450..35856Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:35450..35856TCONS_00034961-exon-sc0001236-1575043694:35450..35856Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1491911889:36574..37435TCONS_00034961-exon-sc0001236-1491911889:36574..37435Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1510915933:36574..37435TCONS_00034961-exon-sc0001236-1510915933:36574..37435Clytia hemisphaericaexon
TCONS_00034961-exon-sc0001236-1575043694:36574..37435TCONS_00034961-exon-sc0001236-1575043694:36574..37435Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034961-proteinTCONS_00034961-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001236supercontigsc0001236:24361..37435 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100106	0.0976196	0.0680074	0.0221782	0.107999	0.0853425	0.257405	0.216882	0.742349	0.689639	0.547675	0.493361	1.17177	1.53494	0.386538	0.976033	0.420838	0.492966	2.23472	2.49438	0.638805	0.79313	0.482077	0.646981	0.580392	0.57554	0.219625	0.0878963	0.911105	0.747146
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006028GABAA/Glycine_rcpt
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
[Close]
BLAST of TCONS_00034961 vs. Swiss-Prot (Human)
Match: GBRB1 (Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens GN=GABRB1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.715e-45
Identity = 130/476 (27.31%), Postives = 225/476 (47.27%), Query Frame = 1 
Query:   46 IWLLTFHIDVSLAQQNVASPDSIVSQDEMTYLTE---KLFRNYNKKAIPIVNGQPIEVKVKLGILDMVPKEHAKLHFSMDSYIQYRWIDPRLEFNFTKATKARFLAYDWRVLEDLWTPNLYFIEAKFGMQHEIPDPNLLVFISPDGEVLLHRRLSITSFCPMKLEKFPFDVQHCSMTIEPYSYHTVYLRLAWD----RLTWLN-LELQDFADVSIKMNSLPFYKYTPISEKSWSRLVVKFQFRRNIDLYLFRDFLPCIFIVALSWINFWVNYRSTPARXXXXXXXXXXXXXXXNQIRLTSPSEELFRSIDYYMMFCNLFVFAALLETTMVGM----TAPNSKPADRLQQI--------MDILQNXXXXXXXETLHETHEQPTGDGNEGKQNDKKATINEF---------PLMETFKLGPLHFYKG----------------------ETHNVDKYSRILFPLSFMVFNIAFFVAHL 1320
            + LL+F + +++    V    S      M+Y+ E   +L + Y+ +  P   G P++V +++ +  +       + +++  Y Q  W D RL ++         L  D RV + LW P+ YF+  K    H +   N ++ + PDG VL   R++ T+ C M L ++P D Q+C++ IE Y Y T  +   W+     +T +N +EL  F+ V  KM S    K    +  ++ RL + F+ +RNI  ++ + ++P   I  LSW++FW+NY ++ ARV L ITTVLT+ T++  +R T P     ++ID Y+M C +FVF ALLE   V        P  K A +  Q         M+ +Q D   +   +  E   + +G       +D KAT+  +         PL      G      G                      + +++DK+SR+ FP++F +FN+ +++ ++
Sbjct:   10 LGLLSFPVMITM----VCCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSYSGIPLN----LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYKMVS----KKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTSVSDPKATMYSYDSASIQYRKPLSSREAYGRALDRHGVPSKGRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNVVYWLYYV 473
The following BLAST results are available for this feature:
BLAST of TCONS_00034961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRB11.715e-4527.31Gamma-aminobutyric acid receptor subunit beta-1 OS... [more]
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