TCONS_00034961-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00034961-protein
Unique Name	TCONS_00034961-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	452

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00034961-protein ID=TCONS_00034961-protein|Name=TCONS_00034961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
HKSIKKKKKGKMLAIIWLLTFHIDVSLAQQNVASPDSIVSQDEMTYLTEK
LFRNYNKKAIPIVNGQPIEVKVKLGILDMVPKEHAKLHFSMDSYIQYRWI
DPRLEFNFTKATKARFLAYDWRVLEDLWTPNLYFIEAKFGMQHEIPDPNL
LVFISPDGEVLLHRRLSITSFCPMKLEKFPFDVQHCSMTIEPYSYHTVYL
RLAWDRLTWLNLELQDFADVSIKMNSLPFYKYTPISEKSWSRLVVKFQFR
RNIDLYLFRDFLPCIFIVALSWINFWVNYRSTPARVLLSITTVLTIVTMT
NQIRLTSPSEELFRSIDYYMMFCNLFVFAALLETTMVGMTAPNSKPADRL
QQIMDILQNDDDDDDDETLHETHEQPTGDGNEGKQNDKKATINEFPLMET
FKLGPLHFYKGETHNVDKYSRILFPLSFMVFNIAFFVAHLFDNTVWSTSA
HA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020353	XLOC_020353	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00034961	TCONS_00034961	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006201	Neur_channel
IPR006028	GABAA/Glycine_rcpt
IPR006029	Neurotrans-gated_channel_TM
IPR006202	Neur_chan_lig-bd
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 126..137 score: 26.09 coord: 247..259 score: 26.35 coord: 90..106 score: 29.17 coord: 172..186 score: 52.04
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 282..303 score: 46.14 coord: 316..337 score: 45.09 coord: 419..439 score: 40.16 coord: 256..276 score: 39.99
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 262..342 e-value: 8.2E-19 score: 68.5
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 256..441
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 47..252 e-value: 2.9E-38 score: 131.4
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 39..257 e-value: 1.8E-42 score: 144.7
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 45..252
None	No IPR available	GENE3D	1.20.58.390		coord: 258..447 e-value: 9.3E-33 score: 112.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 361..387
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 172..186

Blast

[Close]

BLAST of TCONS_00034961-protein vs. Swiss-Prot (Human)
Match: GBRB1 (Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens GN=GABRB1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.008e-55
Identity = 133/478 (27.82%), Postives = 228/478 (47.70%), Query Frame = 0

Query:   16 IWLLTFHIDVSLAQQNVASPDSIVSQDEMTYLTE---KLFRNYNKKAIPIVNGQPIEVKVKLGI--LDMVPKEHAKLHFSMDSYIQYRWIDPRLEFNFTKATKARFLAYDWRVLEDLWTPNLYFIEAKFGMQHEIPDPNLLVFISPDGEVLLHRRLSITSFCPMKLEKFPFDVQHCSMTIEPYSYHTVYLRLAWD----RLTWLN-LELQDFADVSIKMNSLPFYKYTPISEKSWSRLVVKFQFRRNIDLYLFRDFLPCIFIVALSWINFWVNYRSTPARVLLSITTVLTIVTMTNQIRLTSPSEELFRSIDYYMMFCNLFVFAALLETTMVGM----TAPNSKPADRLQQI--------MDILQNDDDDDDDETLHETHEQPTGDGNEGKQNDKKATINEF---------PLMETFKLGPLHFYKG----------------------ETHNVDKYSRILFPLSFMVFNIAFFVAHL 440
            + LL+F + +++    V    S      M+Y+ E   +L + Y+ +  P   G P++V +++ +  +DMV      + +++  Y Q  W D RL ++         L  D RV + LW P+ YF+  K    H +   N ++ + PDG VL   R++ T+ C M L ++P D Q+C++ IE Y Y T  +   W+     +T +N +EL  F+ V  KM S    K    +  ++ RL + F+ +RNI  ++ + ++P   I  LSW++FW+NY ++ ARV L ITTVLT+ T++  +R T P     ++ID Y+M C +FVF ALLE   V        P  K A +  Q         M+ +Q D   +   +  E   + +G       +D KAT+  +         PL      G      G                      + +++DK+SR+ FP++F +FN+ +++ ++
Sbjct:   10 LGLLSFPVMITM----VCCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPPVDVGMRIDVASIDMV--SEVNMDYTLTMYFQQSWKDKRLSYSGIPLN----LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYKMVS----KKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQKKGASKQDQSANEKNKLEMNKVQVDAHGNILLSTLEIRNETSGSEVLTSVSDPKATMYSYDSASIQYRKPLSSREAYGRALDRHGVPSKGRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNVVYWLYYV 473

The following BLAST results are available for this feature:

BLAST of TCONS_00034961-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00034961-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRB1	1.008e-55	27.82	Gamma-aminobutyric acid receptor subunit beta-1 OS...	[more]

You are here

TCONS_00034961-protein (polypeptide) - C. hemisphaerica