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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034958 ID=TCONS_00034958|Name=TCONS_00034958|organism=Clytia hemisphaerica|type=transcript|length=1779bp
gaaaaacgaaacaaaaaaaattcaaataaatagtAGATGCAACACTAATA
AAACccgaaacaaaaaataaaattactaAATATAAAGATATGGTATGGAC
AATAGACAATGGTGGACCCATGTTGGCAATGTTATGGCTCATGATACACT
TGCAAGTTGAAAAAGGAGGTGGAAGTCTCGTAGGATTAGAAAAGATTGAA
TGCAAAGACGTTTGCAAAATGCCAATCCCTTTTGTCAAACGAAGATGGTG
TCGTTTGTATTGTCCGTTACAGCCTCTCATGGTCAAAACACAAATTTCTA
GGCCCCTTACGACGCCTTTCGGGAACAGCTTCCAACCACGTCCGACGTGG
CAAAAAATAACATTACCAGAAGCTGTAACTAAAAAAGATGAACTAGAACC
AACTACCGTCGTTAGTACCACGGCAGGACAAGGATTTCGCCCAGACCCTA
CTTGGGAGAGAATCACTCAACCTGTGACCACAACTGCACCAACAACAACt
gtaaaaacaataacaaaacgTATTACGTCTCCTTTAACTTCAAAACCTGA
GCGGACTACGATACAGCACAGGACAACAAAAAAACGTTATTATATCAGAC
CCTCAAATAATGACACGTTAGAAAAAATGATGGAAGAAAATATAAACACA
CAGCACCTGTATTTTAAATTAGCTGGTGGTCTGCTGGCTACATGCTTGGT
GATTTTTGTACTTTGTTTTTTATGGCGATCAATGAAGAAGCCGCATCGTA
TCTCGTTTACCGATGACCCGATCATTGTGATACAAACGGGAGAAGGCTTA
TCGAATATTCATCGGTAGAAAGGTTATTCCAAGGGATCAGCACTTCCTAG
TTGTTCATGTGTTGTTTTTATATGCAAATTTAGTTTGTTTATGAAGTAAA
AGATTACAAGTTGCTGGAGGATGTGAGGATCCATGTGCTGGTGAAATTTT
GTGGTTTAATGATCCTTGATTCTTCCAAGAATCTAAACCTTCTCTTAatg
caaaattgaaaaatattttttgaggggatcaatttttcaccctctataaa
aaagtatataaaaacGGAAAAGGCTACGTACGTCCACAATTCACCATCTA
CGAATATGCCCTGCCAACACTCATCtttaaaaggaaatttttatggtaaa
aacaaaaaaaaagaaacaaaaattagaATTATATGATTGTAATTACAACT
GATGTTTATTCGATAATAATGAGACCCTTGATCACATACCCCTGTCTAAA
AGCCAGAATACTTGCTCACCGGCACGTATTGCTGGTACAATCGTTGTCAG
AAATAGTGTTTTTGACTCCTTTGACTCTTTTTACCGGCAAGCCACTTCAA
TTTTTAGGTCATTTCCACAACTCCATCATCAATATTGATATTGGGGGGAG
GGGTTGGACAAACAGTTCTGTTCAGAATTGTACTTtccaatattttaaat
ttttttgtttgattattcTTTCACTTAGATAGACGACTAGTTGTTATGAT
TTTATACCCACTAGgataaggaaaaaaatattattgacaaatttttgttg
tttttttgtgttcATGAGAGATACTATTTTAGctgacatttgaaaaatat
catatttattatgttttgtgtttgtttgtttgtttgtaattgtaaacgaa
aaaagtgttttttgtttgtttgtatttttctgTAATActatttttttagt
caaaaaagtaaaatttgttaatgatgatgatgatgatataaAAAGCAGAA
TGATTAAATATAGAAAGTATAAAATCGAC Run BLAST on NCBI protein sequence of TCONS_00034958-protein >TCONS_00034958-protein ID=TCONS_00034958-protein|Name=TCONS_00034958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MVWTIDNGGPMLAMLWLMIHLQVEKGGGSLVGLEKIECKDVCKMPIPFVK
RRWCRLYCPLQPLMVKTQISRPLTTPFGNSFQPRPTWQKITLPEAVTKKD
ELEPTTVVSTTAGQGFRPDPTWERITQPVTTTAPTTTVKTITKRITSPLT
SKPERTTIQHRTTKKRYYIRPSNNDTLEKMMEENINTQHLYFKLAGGLLA
TCLVIFVLCFLWRSMKKPHRISFTDDPIIVIQTGEGLSNIHR Run BLAST on NCBI transcript from alignment at sc0001236:1214..7147+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034958 ID=TCONS_00034958|Name=TCONS_00034958|organism=Clytia hemisphaerica|type=transcript|length=5934bp|location=Sequence derived from alignment at sc0001236:1214..7147+ (Clytia hemisphaerica)
gaaaaacgaaacaaaaaaaattcaaataaatagtAGATGCAACACTAATA
AAACccgaaacaaaaaataaaattactaAATATAAAGATATGGTATGGAC
AATAGACAATGGTGGACCCATGTTGGCAATGTTATGGCTCATGATACACT
TGCAAGTTGAAAAAGGAGGTATGTATACACGgtcatattttttaaagata
ctacTTCTCgttgggatgaaaatttctacgGAAATCCTAACGGAGAAATT
CTATTGTCTTCAGCTCAAAATTTCCatttgggatggttttggaatgAATT
TTTCCCTTTTAATTTGAAGTAGGGACAAAATCAAAGGCAATTTCCCCATT
GTTGGTTGTTTTCCAACCAAGACGAGATTGTAgaccatttttcaaattct
gacagTTTTCAATTTGTGAATACAATTATTTACTTTATATATAAGGATTC
GCCTATGGAACAGCAGCGGTTTTTctctacattttttaaaaacatcaaat
acaAATTACTTGATTACCAAATTACCAAAAGTAATTACGAGCTTGATGTA
TATCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNcccccccccccccgggaatgcACCATCAGAGAT
AATCTGGAATATTTAGTGCTTTAGAGGCTTTATGTTGTATTTATATAACC
CTGTGTCACAAACCTAATGGGATCGCCTACCAACtacctacaatttcagc
ccttCTCGAAAttgactttatttttcaaattcaaagaattGCACTTAAAA
ACCATTCCTACACgtttcatttttataagaacatcaataatttttgaagc
cttcggatgttcttgactttttgagttttaagcctaaaaatatttttaac
atgtttttgatttcaccattttgtgagtatttctgtctattttcctaaga
aaaaagGTGTTTTATAGTTTAGGTataaatttatttcttttttatgattt
ttgttggcgaaaacaaaaatcataaaaaagaaataagtttatacgaCCTA
AACTAGGTGTTTTAGGGctctcaaagccttaaaatgtccttaacttgttc
ttaacattttgcccatcgaagccttatgttcttacatagttttttcttat
aaaaaaaaccattCCTACTTGATTTCCTGACACCAGGTCagaaaatagaa
tttctatccccattgggattaagatataaattttcttccaccactttggg
aagaagttccaccggggcgtCAGACAGAGGTGTACTTATGGTTATGGTCA
AAGATTTACTTTAATCAAACATAGAATAAATAATTCGAACCACTGGCTGC
CATTTAGCGGATATAGAGGgattgaaaaactttcaatgacgaagaaagtt
gtttttaatatttgtttaaGTCCTCAGGCTTATTTATAAGCAAAAATATA
CATCGGAAAAGGCTCAAATATTCTTACTTTTACgttgaatttattttatt
cattttccacATTCAAGATTAGAATAGAATTTTGGGTAATTCTGAAATAT
CATTTACCAAATTATTAGGTACAGTGGATACGTAGCAACCAGacaattaa
gaatatgctaagataatcatcatcatggaatttggcaataGAACGCcatt
ttgaaagcatttttaATTGTAAATTGCCAACTATCCCTAGTAAGGGTCAa
gactttcacaaaaatgccattttatgctttagGTGCGAATTACATGCCAA
ATTTAGGTTGGACTTgaatcctaacctaagaaaTTCCACCCGAATACTGt
tagaatatttttaatttttggataGAATAGAGTAGctttttcttaaaaac
tttaattcTACTTCTTCTTTTAGGTGGAAGTCTCGTAGGATTAGAAAAGA
TTGAATGCAAAGACGTTTGCAAAATGCCAATCCCTTTTGTCAAACGAAGA
TGGTGTCGTTTGTATTGTCCGTTACAGCCTCTCATGGTCAAAACACAAAT
TTCTAGGCCCCTTACGACGCCTTTCGGGAACAGCTTCCAACCACGTCCGA
CGTGGCAAAAAATAACATTACCAGAAGCTGTAACTAAAAAAGATGAACTA
GAACCAACTACCGTCGTTAGTACCACGGCAGGACAAGGATTTCGCCCAGA
CCCTACTTGGGAGAGAATCACTCAACCTGTGACCACAACTGCACCAACAA
CAACtgtaaaaacaataacaaaacgTATTACGTCTCCTTTAACTTCAAAA
CCTGAGCGGACTACGATACAGCACAGGACAACAAAAAAACGTTATTATAT
CAGACCCTCAAATAATGACACGTTAGAAAAAATGATGGAAGAAAATATAA
ACACACAGCACCTGTATTTTAAATTAGCTGGTGGTCTGCTGGCTACATGC
TTGGTGATTTTTGTACTTTGTTTTTTATGGCGATCAATGAAGAAGCCGCA
TCGTATCTCGTTTACCGATGACCCGATCATTGTGATACAAACGGGAGAAG
GCTTATCGAATATTCATCGGTAGAAAGGTTATTCCAAGGGATCAGCACTT
CCTAGTTGTTCATGTGTTGTTTTTATATGCAAATTTAGTTTGTTTATGAA
GTAAAAGATTACAAGTTGCTGGAGGATGTGAGGATCCATGTGCTGGTGAA
ATTTTGTGGTTTAATGATCCTTGATTCTTCCAAGAATCTAAACCTTCTCT
TAatgcaaaattgaaaaatattttttgaggggatcaatttttcaccctct
ataaaaaagtatataaaaacGGAAAAGGCTACGTACGTCCACAATTCACC
ATCTACGAATATGCCCTGCCAACACTCATCtttaaaaggaaatttttatg
gtaaaaacaaaaaaaaagaaacaaaaattagaATTATATGATTGTAATTA
CAACTGATGTTTATTCGATAATAATGAGACCCTTGATCACATACCCCTGT
CTAAAAGCCAGAATACTTGCTCACCGGCACGTATTGCTGGTACAATCGTT
GTCAGAAATAGTGTTTTTGACTCCTTTGACTCTTTTTACCGGCAAGCCAC
TTCAATTTTTAGGTCATTTCCACAACTCCATCATCAATATTGATATTGGG
GGGAGGGGTTGGACAAACAGTTCTGTTCAGAATTGTACTTtccaatattt
taaatttttttgtttgattattcTTTCACTTAGATAGACGACTAGTTGTT
ATGATTTTATACCCACTAGgataaggaaaaaaatattattgacaaatttt
tgttgtttttttgtgttcATGAGAGATACTATTTTAGctgacatttgaaa
aatatcatatttattatgttttgtgtttgtttgtttgtttgtaattgtaa
acgaaaaaagtgttttttgtttgtttgtatttttctgTAATActattttt
ttagtcaaaaaagtaaaatttgttaatgatgatgatgatgatataaAAAG
CAGAATGATTAAATATAGAAAGTATAAAATCGAC Coding sequence (CDS) from alignment at sc0001236:1214..7147+ >TCONS_00034958 ID=TCONS_00034958|Name=TCONS_00034958|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0001236:1214..7147+ (Clytia hemisphaerica)
ATGGTATGGACAATAGACAATGGTGGACCCATGTTGGCAATGTTATGGCT
CATGATACACTTGCAAGTTGAAAAAGGAGGTGGAAGTCTCGTAGGATTAG
AAAAGATTGAATGCAAAGACGTTTGCAAAATGCCAATCCCTTTTGTCAAA
CGAAGATGGTGTCGTTTGTATTGTCCGTTACAGCCTCTCATGGTCAAAAC
ACAAATTTCTAGGCCCCTTACGACGCCTTTCGGGAACAGCTTCCAACCAC
GTCCGACGTGGCAAAAAATAACATTACCAGAAGCTGTAACTAAAAAAGAT
GAACTAGAACCAACTACCGTCGTTAGTACCACGGCAGGACAAGGATTTCG
CCCAGACCCTACTTGGGAGAGAATCACTCAACCTGTGACCACAACTGCAC
CAACAACAACtgtaaaaacaataacaaaacgTATTACGTCTCCTTTAACT
TCAAAACCTGAGCGGACTACGATACAGCACAGGACAACAAAAAAACGTTA
TTATATCAGACCCTCAAATAATGACACGTTAGAAAAAATGATGGAAGAAA
ATATAAACACACAGCACCTGTATTTTAAATTAGCTGGTGGTCTGCTGGCT
ACATGCTTGGTGATTTTTGTACTTTGTTTTTTATGGCGATCAATGAAGAA
GCCGCATCGTATCTCGTTTACCGATGACCCGATCATTGTGATACAAACGG
GAGAAGGCTTATCGAATATTCATCGGTAGATGGTATGGACAATAGACAAT
GGTGGACCCATGTTGGCAATGTTATGGCTCATGATACACTTGCAAGTTGA
AAAAGGAGGTGGAAGTCTCGTAGGATTAGAAAAGATTGAATGCAAAGACG
TTTGCAAAATGCCAATCCCTTTTGTCAAACGAAGATGGTGTCGTTTGTAT
TGTCCGTTACAGCCTCTCATGGTCAAAACACAAATTTCTAGGCCCCTTAC
GACGCCTTTCGGGAACAGCTTCCAACCACGTCCGACGTGGCAAAAAATAA
CATTACCAGAAGCTGTAACTAAAAAAGATGAACTAGAACCAACTACCGTC
GTTAGTACCACGGCAGGACAAGGATTTCGCCCAGACCCTACTTGGGAGAG
AATCACTCAACCTGTGACCACAACTGCACCAACAACAACtgtaaaaacaa
taacaaaacgTATTACGTCTCCTTTAACTTCAAAACCTGAGCGGACTACG
ATACAGCACAGGACAACAAAAAAACGTTATTATATCAGACCCTCAAATAA
TGACACGTTAGAAAAAATGATGGAAGAAAATATAAACACACAGCACCTGT
ATTTTAAATTAGCTGGTGGTCTGCTGGCTACATGCTTGGTGATTTTTGTA
CTTTGTTTTTTATGGCGATCAATGAAGAAGCCGCATCGTATCTCGTTTAC
CGATGACCCGATCATTGTGATACAAACGGGAGAAGGCTTATCGAATATTC
ATCGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034958-exon-sc0001236-1491911889:1214..1381 | TCONS_00034958-exon-sc0001236-1491911889:1214..1381 | Clytia hemisphaerica | exon |
| TCONS_00034958-exon-sc0001236-1510915933:1214..1381 | TCONS_00034958-exon-sc0001236-1510915933:1214..1381 | Clytia hemisphaerica | exon |
| TCONS_00034958-exon-sc0001236-1575043694:1214..1381 | TCONS_00034958-exon-sc0001236-1575043694:1214..1381 | Clytia hemisphaerica | exon |
| TCONS_00034958-exon-sc0001236-1491911889:5537..7147 | TCONS_00034958-exon-sc0001236-1491911889:5537..7147 | Clytia hemisphaerica | exon |
| TCONS_00034958-exon-sc0001236-1510915933:5537..7147 | TCONS_00034958-exon-sc0001236-1510915933:5537..7147 | Clytia hemisphaerica | exon |
| TCONS_00034958-exon-sc0001236-1575043694:5537..7147 | TCONS_00034958-exon-sc0001236-1575043694:5537..7147 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001236 | supercontig | sc0001236:1214..7147 + |
Blast
The following BLAST results are available for this feature:
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