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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034920 ID=TCONS_00034920|Name=TCONS_00034920|organism=Clytia hemisphaerica|type=transcript|length=1421bp
ACTTTATCCCTACAGAAAATATCATCGCAAGTATCGAATGTGAATGGGGA
ATGTCCCTTCCGTCAATTCCTTTATTTGTATGTATCTCTTATTACCTCTC
TCTTCGATGTTAGTTACTTTGTTTTTGCTAAGGAAAACTAAGGACCAGCA
ATCGTCTTTAAAGGGAAAAAACCTGAAAGCCATTCGGAATCCATTGAAAG
CCATTCCTGTCTAGTGATCGAGGTACCTTTTATccgcacacatcccctct
gataagtttttatataattttgatatcaaaactaattttgggatgcatgc
agcctagcTACGTGACGACATTACATATACAAGGACATATTTTGAGGAAC
TGAATAAATTTTTAGATGAAGACCAAATATGGCGAAATTTCATGTCATGG
CAAATACATTGCTAGCTTGCAAGGGTATATTGAGATGAACCAAGAAAAAC
TATAAATGCTTGTTGGCAAAGATTTCGAGATTCATTTACAAAAACACCAG
TCAACACCGTTGGATATCTTTATATTAGTAAGACCAAAAGGAACTACAAC
ACACAAAACGATATTGTCTGACTTTAGGAGATTTGGAATCCCTTGTTTCC
TTTATTTAAGACATTTTTCCACGCATCTTTCATCGACCAACGAAACACGA
GGATCGTCAATCGAGATATCCATTCTTATATTCCTTCGACATTCGCAGAT
TATTTTGGGCGTCTGAATTAAACAACATTCGAAGATGCCTAAGACAAAAT
CCCTCACAAATTGCTACGGCGTAGCAATGATAAGCCGAAGTAACAACTCC
TTAAATACATTTAAAGACTTATCGGAgaagaaatacaaaaatatatgTCA
CACATCCGTGAAAAGCTCAAGTATGCCAAATCTGAACTCTTTATCTTCCT
ATAATCGGAATAGCACAAGCTTTATCAATAACGTTAAAAGAAGCTTAAGT
GCACCAAACTTGAATTCAAACCAGAACACTTCATCTTCAAGTTATTTTAA
CAGATCTAGTAATTTTAGAAAATCGACATGAAGTTATGTAATTCCAGTGT
TATTATTAGATCTTGTTTCATCTAACGTAACGTCTTGGATGAACGAAACT
GTGGCTGTATTTACACTAGTGTAAAGGTCCCCAACGAGTGCCAAATTTCT
CTCGACGAATatcattttttttgctcttgACATTCATGAAATAGTTTTTG
TTATAAGGGATACGAGTCAGACAAGAAAAACNGCTCTTCACATTCATGGA
ATAGTTTTTGTTATAAGGGATACGAGTCAGACAAGAAAAACGCGGCTGCT
TCGCAAATTTTTGACAAGACCCTTTTTATTCAACCTTCGTCAAAAGATCA
ACCTAGAAAGCAAGATTATGACCTTACGTTTGTTAGCTTTCATCCGATAT
TTTGGCCGCCTTTATTCAAGA Run BLAST on NCBI transcript from alignment at sc0001231:74011..75764+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034920 ID=TCONS_00034920|Name=TCONS_00034920|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0001231:74011..75764+ (Clytia hemisphaerica)
ACTTTATCCCTACAGAAAATATCATCGCAAGTATCGAATGTGAATGGGGA
ATGTCCCTTCCGTCAATTCCTTTATTTGTATGTATCTCTTATTACCTCTC
TCTTCGATGTTAGTTACTTTGTTTTTGCTAAGGAAAACTAAGGACCAGCA
ATCGTCTTTAAAGGGAAAAAACCTGAAAGCCATTCGGAATCCATTGAAAG
CCATTCCTGTCTAGTGATCGAGGTACCTTTTATccgcacacatcccctct
gataagtttttatataattttgatatcaaaactaattttgggatgcatgc
agcctagcTACGTGACGACATTACATATACAAGGACATATTTTGAGGAAC
TGAATAAATTTTTAGATGAAGACCAAATATGGCGAAATTTCATGTCATGG
CAAATACATTGCTAGCTTGCAAGGGTATATTGAGATGAACCAAGAAAAAC
TATAAATGCTTGTTGGCAAAGATTTCGAGATTCATTTACAAAAACACCAG
TCAACACCGTTGGATATCTTTATATTAGTAAGGTGGGTTTTATACAATAT
GGTTTCCTTTTTATAGGAAATTGTCATTTTCcaatattgattttatttta
atcTTTTAATTTCGACTTTAACGATTAAGCTTATATTATATCTAAGTCTG
AACTGCTTCTAGTTAACGTACAGTTTACTAGCATTACAGGTAGACGTTCT
GTCTATCGTGCAGACTTATTCTATAAACTCCCTTTACAACTGGTCTGATT
TCAATAcagtaaaaacatttttggtggtCAAGTACTTACATTGAACTAAA
GCGACAAAATCCGCCATCTGTGAACGATTATGACAGATTTGTTTCAGGAT
GTTTCTCTTTTATAGACCAAAAGGAACTACAACACACAAAACGATATTGT
CTGACTTTAGGAGATTTGGAATCCCTTGTTTCCTTTATTTAAGACATTTT
TCCACGCATCTTTCATCGACCAACGAAACACGAGGATCGTCAATCGAGAT
ATCCATTCTTATATTCCTTCGACATTCGCAGATTATTTTGGGCGTCTGAA
TTAAACAACATTCGAAGATGCCTAAGACAAAATCCCTCACAAATTGCTAC
GGCGTAGCAATGATAAGCCGAAGTAACAACTCCTTAAATACATTTAAAGA
CTTATCGGAgaagaaatacaaaaatatatgTCACACATCCGTGAAAAGCT
CAAGTATGCCAAATCTGAACTCTTTATCTTCCTATAATCGGAATAGCACA
AGCTTTATCAATAACGTTAAAAGAAGCTTAAGTGCACCAAACTTGAATTC
AAACCAGAACACTTCATCTTCAAGTTATTTTAACAGATCTAGTAATTTTA
GAAAATCGACATGAAGTTATGTAATTCCAGTGTTATTATTAGATCTTGTT
TCATCTAACGTAACGTCTTGGATGAACGAAACTGTGGCTGTATTTACACT
AGTGTAAAGGTCCCCAACGAGTGCCAAATTTCTCTCGACGAATatcattt
tttttgctcttgACATTCATGAAATAGTTTTTGTTATAAGGGATACGAGT
CAGACAAGAAAAACNGCTCTTCACATTCATGGAATAGTTTTTGTTATAAG
GGATACGAGTCAGACAAGAAAAACGCGGCTGCTTCGCAAATTTTTGACAA
GACCCTTTTTATTCAACCTTCGTCAAAAGATCAACCTAGAAAGCAAGATT
ATGACCTTACGTTTGTTAGCTTTCATCCGATATTTTGGCCGCCTTTATTC
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034920-exon-sc0001231-1491911889:74011..74542 | TCONS_00034920-exon-sc0001231-1491911889:74011..74542 | Clytia hemisphaerica | exon |
| TCONS_00034920-exon-sc0001231-1510915933:74011..74542 | TCONS_00034920-exon-sc0001231-1510915933:74011..74542 | Clytia hemisphaerica | exon |
| TCONS_00034920-exon-sc0001231-1575043694:74011..74542 | TCONS_00034920-exon-sc0001231-1575043694:74011..74542 | Clytia hemisphaerica | exon |
| TCONS_00034920-exon-sc0001231-1491911889:74876..75764 | TCONS_00034920-exon-sc0001231-1491911889:74876..75764 | Clytia hemisphaerica | exon |
| TCONS_00034920-exon-sc0001231-1510915933:74876..75764 | TCONS_00034920-exon-sc0001231-1510915933:74876..75764 | Clytia hemisphaerica | exon |
| TCONS_00034920-exon-sc0001231-1575043694:74876..75764 | TCONS_00034920-exon-sc0001231-1575043694:74876..75764 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001231 | supercontig | sc0001231:74011..75764 + |
Blast
The following BLAST results are available for this feature:
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