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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034913 ID=TCONS_00034913|Name=TCONS_00034913|organism=Clytia hemisphaerica|type=transcript|length=832bp
GTCATCCTATCATCCTGTCTTGTCGTCATGCACTTAATCACTGTACACCT
AACAACTTAAAGCTCATGTTTGACTAACAAATCAAATGTGATAGTTTGGA
GTAGATTTAGTTTATTGGTGGGTAAGCAgAAGATTAGAAAGATATTAttt
gaaaagatgaaaaaagcTGTTACAACTCTACGACTGGCTTATTATGGTTG
TCCAAATCGACCATTTTTTCATATAGTTGCCACCCGCAGAAGAGTTGCAC
GGAACCGAGGCTACTATGAGCAGGTTGGTACATATGACCCTATGCCTAac
gatcgaaatgaaaaattagtAGCACTCAATATGGACAGAATTAAATACTG
GTTAAGCCAAGGTTGTTCTACATCTAGACCGGTAACTAAACTATTAGGAC
TTGCTGGCATATTCCCTATTGATGAAAGAACATTAAATAAAGCTGATTTG
AATCGACAGAAATTGGTGAAATCTGAGAAATCAGCTGAGGATGAAGTAGC
GCagtaaattatatttttctggTTTGATATTTTCTGTCAAAGAAAGGTCA
ATGTCAAATGTTAAGAAATGAAAATACAAGCTCCTGTTTTCCTGAGAAGA
TTAACTCAATAAAAActtatcaaaacaataaaacattgGAATTTGTGTGG
AATGACTAAGAACCTTTGCAAAGGAAGCATTTAAGAATAGAAAGTTGCCA
GCAGcaattgttttggtttttttgagATTGTACATTTTATATTATTAGAT
AGCATTTTTGTATCAAATTTATTACCTGTTTTTATTGCCGTTGAGCTTAA
TAGAAGAAACTATTTTAATTCCAGGTGAGAAA Run BLAST on NCBI transcript from alignment at sc0001231:31655..42328+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00034913 ID=TCONS_00034913|Name=TCONS_00034913|organism=Clytia hemisphaerica|type=transcript|length=10674bp|location=Sequence derived from alignment at sc0001231:31655..42328+ (Clytia hemisphaerica)
GTCATCCTATCATCCTGTCTTGTCGTCATGCACTTAATCACTGTACACCT
AACAACTTAAAGCTCATGTTTGACTAACAAATCAAATGTGATAGTTTGGA
GTAGATTTAGTTTATTGGTGGGTAAGCAggtaagaaataatttttctttt
ttgttctgGTCTGCCACCACGTTCAATTTCTGCTGCTCTAATGTATGTAT
GTTTTTCTCTCTCATATTGATCAATCTTTCAAGTCTAGAAGGTAAACATT
ATAAAATGAATCAATTCATGTTATGATGACCTTCTAGACTTGAAAGATAA
TTCAAGGACCAGGAAAATTAAGTCGAAATTATGTGGTCTCTATCAGTGCC
GTCACaaaaggaccctgccgacgcaccggacttaacgaacaccggacacg
cgaaagtccggtgtaaaatgcgcattttttttaccaccggacaatttcta
caccggacttaagaaagtcggatgtccggtgtcggagaaagATACTTTTT
TCCCACCgtacaatcaaaacaccggacatgacaaGTCCGGTGcttccggt
gtttcttaattttttgtttcataaatgtccagcgtccaaaattccctgta
tgcaacaccggactgacaccggacttattgcgtccggtgtagcgaaagga
tattTTTGCCACCgaacaaatacaccggacagtccggtgcgtcggcaggg
tcgtcCTGTCACAAACAGTCAGGATTAACCGCCtaaataggaacaaattt
ttcgatttcacaaatattcttatctaggatataggtacttatctaggaat
aaaccttttttcaaagaggccaccctgttgaataattatgtagtccagca
gaaaaacaatgataaaaccatgcgtaattattacaatatgcatgttACAG
TACACTATCATTGTTtctatggctggactacataattattcaacaggacg
tcctctttgaaaaaaggtctatattttttattctatctaagattagaata
ttttagaaatttttattttacactaAAGCTAAAAAAAGTCGCATGTATCA
ATTAtcatctatgttttcatttaggTATTTTCTAACTGTGTTCCAAATTT
CAGCATTTTAAAGTTTCCAGGCAGATTCCACTGCTTATTAATGGTCTATT
ACACATCAAATCCCATTTTTTGGTAAagagagccttaaaatgttcctatt
taagatattttttacaaaagctaAGATTTTCCACCCTTCCACCCACCAAA
AGTGCTGACTGAAAAACAGCCATGTAAacacaaaactcaacattctcaca
aaagttgtcttttttatttgggttggtctaaaaagcagggtagccaattg
gggtagccaattgggctaggttataaCCCCATAaatggggtacctaaata
ttttacagaccagaatagaaacaccgaaaatgaatgcatagaaccacatt
ttactgaccagggagcatgaaCCTGATTGATACTtcgattgatcatgtat
gattccaaagataaacaaagttataaattaccacgtgttaatgcacgagg
agtaagaaagaGAGCTTCATTAtcatagagctatttcaaaagactttttg
tacctattataagctgccatatttaaaaattttgaaaggaattaattgtt
tgaaacatctaaacatgatttaaattaaacaatagattcaataacaaagg
attgttaaaatatgacaagattagagatcatatggcccaaaggcgattac
aaagctattatcatcgaaatacagcttcacggaaataacaattaaaaaca
taaataaaatctaaatctaaaatataaaaaaactgttttgtatatatttt
ttattcggatctgtaaattttcaaacgaagccaagaaggaagacaaaatg
gcgccaggtctcttgagaagtaacaaagttcagtacctttggaaaaaatg
ctattgtggctgaagttcgagaggaatcttaaattttattacatggaatc
attaacaagatgctgtaatagttatttccacatgaaaacaccattggcta
ccctgctttttagaccaaccctttttatttcccaaacattcgtctgaagc
gttcacttccacaataatttatgtaattgcaatttcgttcagtccacagt
cggcttcaacatatatacgtgtttttatttacgtgaccgaagtgcctact
aaaacaatccggggggggtagcaactccagaagatttttcaagttgtaat
attttttcaaaatctatcctatcttatagagctttgaaaaagaaagaaaa
tgaggggtcataggcctccagaggattagtggttgtaaagatatattcaa
attttagtgtcaaaaatttgactaaaaatgtcaaaaaaaaggttaggaaa
atagcttggaaaaattcgaaaaatgtgtcaaaaaagaaaaaaagaaattt
tacagtcatgcttcttaaattttgcatatctctttttctagtgtagctag
agacctcaaattgggagggagaattctttgatggtgttaaaatattattg
tataaaaatatttgtaaaatatttagtatatttatcaaaataacgaaaga
tatatctttttttcaaaaaagaagacattgcattgttttatttttgtttt
tgaagaaaatagcttggaaaaggttgaaatgagtcaaaaaaggtggtagg
acccattttcaaggggtctctggaaatggaggaacaaaaacttatgagta
aagaataagtttttctgaaaggagaaaccccgaatgaaaagaaaatccat
ttcggcagaaataaatttttttttttgggacattcccatgctaaagaagc
aaaaaagttactacatgaaaatgaaagaactagaattagtgattgtgatt
tttgaattcctcaccctttttctgataaaagtttcagcctccaaatacat
tttcctccgtttccagacacattttgttcttcgatagttgcaaatttttt
ttctcccgtcggcaaacaattttcaaaatgttacaaaacgtttggcattt
taccaatttgctgtctagcccgtgtccacagtgttatataccgctggaaa
tctaagatcacgggctttcatttagtaaaaaccggaacgctttagcatac
atagaaaaaaagttccaagggttcaaagttcacggaaaaatgaaacattt
ggtcaacaaaagttgcatgacttctggagtcgctaggGGCGGGGGTAAGT
GAcaaagcaacacagcagattatttgtaaggtaaagaaatatcttttggc
attgacaatcaaatataatataatatattatatttccttaattcaaaaat
caaaaattcatttttcattcgcgaaagaTCGTtttaatttccgatctcgg
aacgtgcaaaacgcctgCAGCCCTTCCGCCCAATAttcacccaatcagct
taaattcgctttcattgtcctttgactttcaaaaaatagtatttaaaaat
tatgaatttatgataattacaaaaaacaaaaagtttgatacttcattagg
gaaatattcaataaattcctaggttcaattttcagtgggcgtttttctag
ggctttgtttatcgcgcaatttttgcgtcacacaaactttctcatccgtt
cgtaataattatgcattgccaaatttggttctccattgtcaagttagGAT
CGATCGTGACGTCACccaagcataaaaaagaaaggatttcgtcagtttta
tgcatatatattaatttgcgagatattctattcgccgcgcgagcaCACTT
TTtacgtagactagtcggaatactttcttttactcgcgggattgatggta
acttttcatcttcgttatttttaaaatgaagcacaaccgaaaaaaaatga
aacttcagaaagttgcgtatttccagtgagtaaacaattcttacaattaa
caaaattgatgatgatgattttttttcggtcaggcaaatgtctcgcattg
ggggttctagtcttgactcctaagcctacgcgagattgaagcgtttgggt
aaacgagacaaaactccaaaaaagctggtgttttgaagcgcttattctgt
gcgatcgaaatatcgctgtttgtgacgcactgtctATCTACTACCTATCT
ATACCTATTTTGTTGCTTCTGCTTGAACAGCTCATCAGAGACGTTTTCGT
CTCATCCAACTCGTTGAGTCCGATGCTTTGACATTTTACCTTGAGGCTGT
TGGAGTCAGCTTGCCTAAGGGTGAAATAGTGGGCAAGCAGTGGTTCGTCC
GGAAAAGTTGTGAGGAACGtgtctaaaagttttttttgaatacttctttg
gcagtctaagcttaaactcctCTATATCacatcaggattagaaactaccT
ACAGTTAGTGCAAGTACATCAATTTGTAAAGTGTCTTTACGTCacataga
acaatagaaaatagcaaaagaacaaaggaattaccaCCCATAGCCACCAT
TTTGCAACCATGGGGAATCACGATTTTACGGGTATGGGAATCCTCATATC
aaataaagcatcttctgaaaatttcattcttccccataaatgcaaaaatg
aaaaacgaagaggctttctttttctaattgtctttttaatctgccatgaa
gtgttataaaattccctATGTAATGACACGTTCTCCTACTAagaggttta
aaaaatgacgttgTTACTGCCGTTTTGCAGTAGTTTTCCTTTGTATATAT
TCCCTAGTTTATCTTTTAGTAATTGctttaaaaatgtaaataattaGCTG
TTTATGTGAGTGCTAGTCCTTTGGGAGTTGAGTTATATCGTTAATCGTNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGCTTTTTAGCCGTATTTCTGAAGAGAAAA
CGAGTCGAAACACACCCACATTTGTCCTTAAGTGTCGTTTGAATCAGACG
TCTGGTGCGGCATttacagtgaaaacactcttcTTGAACCAAGACAACAA
AATGTGGCTCCCTCTTGATATGAGGTCTACCGAGGAAAACCTGATACAAA
AACTCAAGGTTGCTGAGTTGCAGGTTTTGATGTATTGCTTGAAGTTGAGC
AAAAGTATTGAGAAACAAGAGAATGTTTCGACAATTGAACTTGAATGGAA
GACTCTGGATCTCCTTCATGTTGAACTTATTGAAATTTCGAAAGCTTGTG
TAAGACATATCGGCCAACGAGAAAATTGGACTCATGATATGGAAGATACA
CTTATGGAACGATTCGCTTTTATTGACTCGGAAGTCGCAGAGGTACAAGA
GACGTACCTGTTTTGGAAGGAGTCGTTTGTTCTGAANtggctgcctcttt
aaaaaaaggtctatgcaacgggttgaaaacgaaagtgacgaaaaaaccCC
GTGCAAATACACTCGATCACTGCGACCCGTTGCATTTGCACAAAGTGGAA
AAATGTTacacttgatttaaaaaaaaaagcacggatcaaaattttaaccc
gcagacaaaaattttcaaaaaagtctaaagaatcttctaaagagaaaatg
aaaatgctatTCGTCTTTGTTTTAtgccattttcattttaaagttgaGAT
TTGTTAATTTTCGCGCCTTTTGCCTTACACGTTCTAGATCATTTGCACAG
GGTCGGAAAAAATCGTTGAAACCGTTGAAAATGCACACTttgtgcaaatg
caaggatttccgtGACTGAATAAACAGGGGNCTTTAAGCACGGGAGTTAT
CCTCTCGCGAGACGCTGACGTAAACTCTTTGCTAGCCGTCGACACCGATC
CTTCATCCGATGAATTTGATGTACCTTTGTTTGATGTTGGCAGCGtgaat
acaaaagaaatcaTCTGGCCTCCTAGCATTAACGAACTCTGTTGTTTTCT
TGAAATCAATACCAAAGTGTCTAACAACTATGATAAAAGGACAAAATACA
ATCAAAGGTTGAATTGGGAACATTGGAGATTATGATGATTGGTTTGTTAC
AATGTCTTTTTACTTTGTTGATGGTTGAGTTGTTATAGTTTTTATTTTGG
TCTAGTCAAGTGAGTCCCTTGACGGTGGGGAGTGTTACTGCCGTTTTGCA
GTAGTTTTCCTTTGTATATATTCCCTAGTTTATCTTTTAGTAATTGcttt
aaaaatgtaaataattaGCTGTTTATGTGAGTGCTAGTCCTTTGGGAGTT
GAGTTATATCGTTAATCGTNcataggatgaaccatattcatgtggctttc
agccttgcactccatcacagagccttttgagatattttaccaACTAGCCC
agacaaaaattttaaaccttaattatttgaatgcatgcctttttaatact
caaatataaaaaaattaaagaattttaacttggtcattagtcaaaaaagt
cattaaaatcgATTAGCCTCTCAGGGCTCGAAAtgacggtcggacatcgg
acattgtccgacccaattgctgaaatgtccgacccaaatcgattctagtc
ggacatcatgtccgacccaattactttcggtgccttcaaaaaatttgtca
gatgcgttgtgaaatttccaaaagtaaTTATAATTAACATAGAATTAGTA
ACctctttatttacacacaaaaactcccAAAGTTGCGATCATTAGTGTTA
GATATTCATTTTGTGAAAGCATGCTTCAAGTAAAAGCCATAAGCTTCTGA
CCATTAATTGgcatttgtttagcttcttttTAATCAATGTGAAATGCTAT
CAGAAGCTTGTGTTAGACTTGAAGTATATAGATTTGGAAGTAAGTGCAGT
CTGTCAGGTGTATTTTCATTCAAGTAAAGATTACTCAAGCTCACAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGCTACGTACAGAAACCTTTT
GCTTTTAAGTTGAAAGACGAATGTCCGAccccacataaaaatcaatcgga
catgtccgacccaatttactttaaaagccttaggacatgtccgacccaaa
tcaatttttggttggacaatgtgtccgaccacctaaatattgttatttcg
agccctgcctctgcgatggagtgcaaggctgaaagccacatgaatatggt
tcatcctataaaaggaagttcattctatcaTGAGTTTTCTTGGTGTTGAG
AAATAAGCCTACTGACTGACAAGGCTGTTTCCACTCTCAGTTAGAAGATC
TTGAGCTTTGGTGATGTAGGTAATCTAGGAAACTGAGGAATTGCAGAGGG
TGTCTTACACTCCATCActgtttgagaaaaattctttcagAACCAACGAT
TGAGGTACGCATAGCATAGTCAAGGCATATAATAAATAGTAACAGTGAGA
GGATCTCCTTGAAGGGCTCCGGTTACTATTTTGAAAAAGGTCAATATCCA
CACTGTCGGGTGTGGAAACTATACACGATGTGTCTCTGTACATTGTCcag
gaggtcctataaattcaatCAATCTTTGTCCTtttttcttgagatttcat
tgttagttttttctgaatttttgtacaaagatgtaATTTAGTAATGTCTA
AAATATGACTGAGTCTGatttatgagaaaaaaaattttccggctgaaaat
gacagaaatatgccggaaatcactggttttcgtttttatatctttatttt
ttcaaagaaaaacaatatTTATAAGAATGCCCATGATTTTAAAGCATTGt
tcaattttgaatgaaattccgctaccttaattcaaaaggggcctaactat
attttcattttcaattccaAGAAGATTAGAAAGATATTAtttgaaaagat
gaaaaaagcTGTTACAACTCTACGACTGGCTTATTATGGTTGTCCAAATC
GACCATTTTTTCATATAGTTGCCACCCGCAGAAGAGTTGCACGGAACCGA
GGCTACTATGAGCAGGTTGGTACATATGACCCTATGCCTAacgatcgaaa
tgaaaaattagtAGCACTCAATATGGACAGAATTAAATACTGGTTAAGCC
AAGGTTGTTCTACATCTAGACCGGTAACTAAACTATTAGGACTTGCTGGC
ATATTCCCTATTGATGAAAGAACATTAAATAAAGCTGATTTGAATCGACA
GAAATTGGTGAAATCTGAGAAATCAGCTGAGGATGAAGTAGCGCagtaaa
ttatatttttctggTTTGATATTTTCTGTCAAAGAAAGGTCAATGTCAAA
TGTTAAGAAATGAAAATACAAGCTCCTGTTTTCCTGAGAAGATTAACTCA
ATAAAAActtatcaaaacaataaaacattgGAATTTGTGTGGAATGACTA
AGAACCTTTGCAAAGGAAGCATTTAAGAATAGAAAGTTGCCAGCAGcaat
tgttttggtttttttgagATTGTACATTTTATATTATTAGATAGCATTTT
TGTATCAAATTTATTACCTGTTTTTATTGCCGTTGAGCTTAATAGAAGAA
ACTATTTTAATTCCAGGTGAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00034913-exon-sc0001231-1491911889:31655..31783 | TCONS_00034913-exon-sc0001231-1491911889:31655..31783 | Clytia hemisphaerica | exon |
| TCONS_00034913-exon-sc0001231-1510915933:31655..31783 | TCONS_00034913-exon-sc0001231-1510915933:31655..31783 | Clytia hemisphaerica | exon |
| TCONS_00034913-exon-sc0001231-1575043694:31655..31783 | TCONS_00034913-exon-sc0001231-1575043694:31655..31783 | Clytia hemisphaerica | exon |
| TCONS_00034913-exon-sc0001231-1491911889:41626..42328 | TCONS_00034913-exon-sc0001231-1491911889:41626..42328 | Clytia hemisphaerica | exon |
| TCONS_00034913-exon-sc0001231-1510915933:41626..42328 | TCONS_00034913-exon-sc0001231-1510915933:41626..42328 | Clytia hemisphaerica | exon |
| TCONS_00034913-exon-sc0001231-1575043694:41626..42328 | TCONS_00034913-exon-sc0001231-1575043694:41626..42328 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001231 | supercontig | sc0001231:31655..42328 + |
Blast
BLAST of TCONS_00034913 vs. Swiss-Prot (Human)
Match: RT16 (28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.075e-28 Identity = 52/122 (42.62%), Postives = 77/122 (63.11%), Query Frame = 1
Query: 133 IRKILFEKMKKAVTTLRLAYYGCPNRPFFHIVATRRRVARNRGYYEQVGTYDPMPNDRNEKLVALNMDRIKYWLSQGCSTSRPVTKLLGLAGIFPIDERTLNKADLNRQK-----LVKSEKS 483
+ +L + + T+RLA GC NRPF+ IVA + R+ + EQ+G+YDP+PN EKLVALN+DRI++W+ G S+P+ KLLGLAG FP+ + A+ R+K L+ S+K+
Sbjct: 4 LTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLLASQKT 125
The following BLAST results are available for this feature:
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