TCONS_00034907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00034907
Unique NameTCONS_00034907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00034907 ID=TCONS_00034907|Name=TCONS_00034907|organism=Clytia hemisphaerica|type=transcript|length=678bp
ctcgcttattcttcgtgCGCCCTGCATAACACAGGCAAACGCGTGCCCTT
AACCGAACCGTCAACTATGGCAGACGAAAAACAAGAAGATGGCAAACAAC
CCATCGACCCGGTGGACTTATTCGTTGAAGTGGAAGTCCTGAAAAATGAT
ATTGGAGATTTTGTGGACGAGATGTCATTTAATGTAACTCCAGCACGTGA
GATAATCGCCACATTAAAGGAATTGAGGTCCGAGTTTAGGACCAAGCACA
CCAAGATAAAATTATTAATTGGCACTCCCAGGTACAATACTGATTACAAA
CGAGAATTCGATGACGTCANATTTGATGTAACTCCAGCACGTGAGATAAT
CGCCACATTAAAGGAATTGAGGTCCGAGTTTAGGACCAAGCACACCAAGA
TAAAATTATTAATTGGCACTCCCAGGTACAATACTGATTACAAACGAgaa
ttcgatgacgtcatccagAAGATCAAAACTGGTATCGAAATGTCCAAGGA
AGCTCAATCAAAGGAAGCAGCAACCCAGAAAACCATTCTCAACCACCAGG
AGAAGTCGAAGCTGTTCCAAGTTAACACAACCCTCAGGATTGCAACAGAG
CTCGAGTCCGAATGGTGTGAGTCCACCATTCCACAACTGACTGATGACCA
ACTCTTGAAGCTACAGGATAACCAGANN
Run BLAST on NCBI

protein sequence of TCONS_00034907-protein

>TCONS_00034907-protein ID=TCONS_00034907-protein|Name=TCONS_00034907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
LAYSSCALHNTGKRVPLTEPSTMADEKQEDGKQPIDPVDLFVEVEVLKND
IGDFVDEMSFNVTPAREIIATLKELRSEFRTKHTKIKLLIGTPRYNTDYK
REFDDVXFDVTPAREIIATLKELRSEFRTKHTKIKLLIGTPRYNTDYKRE
FDDVIQKIKTGIEMSKEAQSKEAATQKTILNHQEKSKLFQVNTTLRIATE
LESEWCESTIPQLTDDQLLKLQDNQX
Run BLAST on NCBI

transcript from alignment at sc0001230:76413..77090

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00034907 ID=TCONS_00034907|Name=TCONS_00034907|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0001230:76413..77090 (Clytia hemisphaerica)
NNTCTGGTTATCCTGTAGCTTCAAGAGTTGGTCATCAGTCAGTTGTGGAA
TGGTGGACTCACACCATTCGGACTCGAGCTCTGTTGCAATCCTGAGGGTT
GTGTTAACTTGGAACAGCTTCGACTTCTCCTGGTGGTTGAGAATGGTTTT
CTGGGTTGCTGCTTCCTTTGATTGAGCTTCCTTGGACATTTCGATACCAG
TTTTGATCTTctggatgacgtcatcgaattcTCGTTTGTAATCAGTATTG
TACCTGGGAGTGCCAATTAATAATTTTATCTTGGTGTGCTTGGTCCTAAA
CTCGGACCTCAATTCCTTTAATGTGGCGATTATCTCACGTGCTGGAGTTA
CATCAAATNTGACGTCATCGAATTCTCGTTTGTAATCAGTATTGTACCTG
GGAGTGCCAATTAATAATTTTATCTTGGTGTGCTTGGTCCTAAACTCGGA
CCTCAATTCCTTTAATGTGGCGATTATCTCACGTGCTGGAGTTACATTAA
ATGACATCTCGTCCACAAAATCTCCAATATCATTTTTCAGGACTTCCACT
TCAACGAATAAGTCCACCGGGTCGATGGGTTGTTTGCCATCTTCTTGTTT
TTCGTCTGCCATAGTTGACGGTTCGGTTAAGGGCACGCGTTTGCCTGTGT
TATGCAGGGCGcacgaagaataagcgag

Coding sequence (CDS) from alignment at sc0001230:76413..77090

>TCONS_00034907 ID=TCONS_00034907|Name=TCONS_00034907|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0001230:76413..77090 (Clytia hemisphaerica)
NNTCTGGTTATCCTGTAGCTTCAAGAGTTGGTCATCAGTCAGTTGTGGAA
TGGTGGACTCACACCATTCGGACTCGAGCTCTGTTGCAATCCTGAGGGTT
GTGTTAACTTGGAACAGCTTCGACTTCTCCTGGTGGTTGAGAATGGTTTT
CTGGGTTGCTGCTTCCTTTGATTGAGCTTCCTTGGACATTTCGATACCAG
TTTTGATCTTctggatgacgtcatcgaattcTCGTTTGTAATCAGTATTG
TACCTGGGAGTGCCAATTAATAATTTTATCTTGGTGTGCTTGGTCCTAAA
CTCGGACCTCAATTCCTTTAATGTGGCGATTATCTCACGTGCTGGAGTTA
CATCAAATNTGACGTCATCGAATTCTCGTTTGTAATCAGTATTGTACCTG
GGAGTGCCAATTAATAATTTTATCTTGGTGTGCTTGGTCCTAAACTCGGA
CCTCAATTCCTTTAATGTGGCGATTATCTCACGTGCTGGAGTTACATTAA
ATGACATCTCGTCCACAAAATCTCCAATATCATTTTTCAGGACTTCCACT
TCAACGAATAAGTCCACCGGGTCGATGGGTTGTTTGCCATCTTCTTGTTT
TTCGTCTGCCATAGTTGACGGTTCGGTTAAGGGCACGCGTTTGCCTGTGT
TATGCAGGGCGcacgaagaataagcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020318XLOC_020318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034907-exon-sc0001230-1491911889:76413..77090TCONS_00034907-exon-sc0001230-1491911889:76413..77090Clytia hemisphaericaexon
TCONS_00034907-exon-sc0001230-1510915933:76413..77090TCONS_00034907-exon-sc0001230-1510915933:76413..77090Clytia hemisphaericaexon
TCONS_00034907-exon-sc0001230-1575043694:76413..77090TCONS_00034907-exon-sc0001230-1575043694:76413..77090Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00034907-proteinTCONS_00034907-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001230supercontigsc0001230:76413..77090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87453	1.69662	1.45605	1.25692	4.38652	3.38568	3.4039	3.82403	1.72112	2.44771	1.07295	2.01518	1.10681	1.09718	0.687264	1.15241	0.795015	0.523842	1.12578	0.420731	0.87766	0.963207	0.346935	0.551974	10.6395	6.16118	0.20745	0.332094	0.335842	0.513255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00034907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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